FC878063

Overview
NameFC878063
Unique NameFC878063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4623 contig Ccv1_Contig4623:1..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PPR71_ARATH (Pentatricopeptide repeat-containing protein At1g34160 OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.470e-49
Identity = 108/223 (48.43%), Postives = 140/223 (62.78%), Query Frame = 1
Query:   25 YKNAVVMSHFSHIHIKQLQAHLTTTGQFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRS------DALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            Y   ++    S   IKQLQ+H  T G FQS    +RS+++E  A+SP  +L++A  +FR I  P TND+NAI+RG A SS P+ A  WYR ML+ S  S      DALTCSF LKACAR L      Q+H  + R                Y+K G+++SA K+FDEM VRD+ASWNALIAGL  GN ASEA++L+KRM+ EG+ + +EVTV+ AL AC HLG
Sbjct:    5 YMETMIQKCVSFSQIKQLQSHFLTAGHFQSSF--LRSRLLERCAISPFGDLSFAVQIFRYIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFTLKACARALCSSAMDQLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLFDEMPVRDVASWNALIAGLVSGNRASEAMELYKRMETEGI-RRSEVTVVAALGACSHLG 224          

HSP 2 Score: 69.707 bits (169), Expect = 1.588e-11
Identity = 46/175 (26.29%), Postives = 85/175 (48.57%), Query Frame = 1
Query:  154 ALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEM-GVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            A S   +L  A+ LF ++       +NA++ GL   ++ + A+  Y++M     R   +T   AL AC+ +  + E      ++                 +Y+K G +  A +VF++  G + + +WN +I G A    A  A+++F +++  G+ KP++V+ L AL AC H G
Sbjct:  153 AYSKNGDLISAYKLFDEMPVRDVASWNALIAGLVSGNRASEAMELYKRMETEGIRRSEVTVVAALGACSHLGDVKEG----ENIFHGYSNDNVIVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGI-KPDDVSYLAALTACRHAG 322          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP284_ARATH (Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.847e-27
Identity = 71/208 (34.13%), Postives = 116/208 (55.77%), Query Frame = 1
Query:   55 SHIHIKQLQAHLTTTGQFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINA-PSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGS-HRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 672
            SH+ I  LQ H +           + + ++ F A+S    L++A  LF   ++ PST+D+N ++RG ++SS P N++L+Y +ML  S  R D  T +FALK+C R+ ++ + L+IH  V+R                Y+  G +  A KVFDEM VRD+ SWN +I   +   L ++A+ ++KRM  EGV   +  T++  L++C H+
Sbjct:   26 SHVIINGLQHHPS-----------IFNHLLRFCAVSVTGSLSHAQLLFDHFDSDPSTSDWNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCLEIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGLHNQALSMYKRMGNEGVC-GDSYTLVALLSSCAHV 221          

HSP 2 Score: 70.0922 bits (170), Expect = 1.216e-11
Identity = 48/183 (26.23%), Postives = 81/183 (44.26%), Query Frame = 1
Query:  127 VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            V + ++  Y+ +   E+A    +F ++       +N ++   +H      A+  Y++M       D+ T    L +CA V AL   + +H                    +YAK G + +A  VF+ M  RD+ +WN++I G        EA+  F++M   GV +PN +T LG L  C H G
Sbjct:  144 VATSLVRCYSANGSVEIA--SKVFDEMPVRDLVSWNVMICCFSHVGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGV-RPNAITFLGLLLGCSHQG 323          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP169_ARATH (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.385e-23
Identity = 69/208 (33.17%), Postives = 106/208 (50.96%), Query Frame = 1
Query:   61 IHIKQLQAHLTTTGQFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGS---HRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            +H+KQ+QA +   G          S++I F ALS    L Y+  + + I  P+   +N  +RG + S  P  + L Y+QMLR      R D  T     K CA +        I  HVL+               ++A  G++ +A+KVFDE  VRD+ SWN LI G  +   A +A+ ++K M+ EGV KP++VT++G +++C  LG
Sbjct:   67 LHLKQIQAQMIINGLILDPFAS--SRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGV-KPDDVTMIGLVSSCSMLG 271          

HSP 2 Score: 72.0182 bits (175), Expect = 3.201e-12
Identity = 46/167 (27.54%), Postives = 81/167 (48.50%), Query Frame = 1
Query:  175 LAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            L  +  LF  +       +NA++ G   + +  +A+  +++M   + + D +T    L AC+++ AL   + IH ++ ++              +YAK G I  A  VF  +  R+  ++ A+I GLA    AS A+  F  M   G+  P+E+T +G L+AC H G
Sbjct:  339 LDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGI-APDEITFIGLLSACCHGG 504          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP184_ARATH (Pentatricopeptide repeat-containing protein At2g34400 OS=Arabidopsis thaliana GN=PCMP-E23 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.211e-21
Identity = 57/171 (33.33%), Postives = 93/171 (54.39%), Query Frame = 1
Query:  166 LNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVL-WYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            L +  Y+  LF     P+   FN ++RGL ++     A L  YR+M     + D  T +F   ACA++  +     +HS + +               +YAK G++  A+K+FDE+  RD  SWN++I+G ++   A +A+DLF++M+ EG F+P+E T++  L AC HLG
Sbjct:   78 LGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEG-FEPDERTLVSMLGACSHLG 247          

HSP 2 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 54/181 (29.83%), Postives = 83/181 (45.86%), Query Frame = 1
Query:  133 SKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            SK+I  Y      +L  A  +F Q+       + A++   + + K + A   + +M +     DA T S  L AC  V AL    QI +H                  +Y K G +  A +VF+ M V++ A+WNA+I   A    A EA+ LF RM +     P+++T +G L+AC H G
Sbjct:  272 SKLISMYG--KCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFDRMSV----PPSDITFIGVLSACVHAG 446          

HSP 3 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 48/183 (26.23%), Postives = 84/183 (45.90%), Query Frame = 1
Query:  127 VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            +   +I  YA     ++ YA  LF +I    T  +N+++ G + +    +A+  +R+M       D  T    L AC+ +  L     +    +                +Y K G++ SA++VF++M  +D  +W A+I   +Q   +SEA  LF  M+  GV  P+  T+   L+ACG +G
Sbjct:  169 INHSLIMMYA--KCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGV-SPDAGTLSTVLSACGSVG 348          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.211e-21
Identity = 60/204 (29.41%), Postives = 102/204 (50.00%), Query Frame = 1
Query:   67 IKQLQAHLTTTGQFQSKLCPVRSKIIEFYALS-PLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            ++Q+ AHL  TG  +S     RS + +   L+     +AY H LF  +  P    FN++++  +    P + V +YR+ML  +      T +  +K+CA + AL     +H H +                 Y+K G++  A++VFD M  + I +WN+L++G  Q  LA EA+ +F +M+  G F+P+  T +  L+AC   G
Sbjct:   25 LQQVHAHLIVTGYGRS-----RSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESG-FEPDSATFVSLLSACAQTG 222          

HSP 2 Score: 78.5666 bits (192), Expect = 3.420e-14
Identity = 45/183 (24.59%), Postives = 88/183 (48.09%), Query Frame = 1
Query:  127 VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            V++ ++ FY  S   ++  A  +F ++   S   +N+++ G   +     A+  + QM       D+ T    L ACA+  A+     +H +++                +Y++ G++  A++VFD+M   ++A+W A+I+         +AV+LF +M+ +    PN VT +  L+AC H G
Sbjct:  144 VQAALVTFY--SKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAG 324          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.445e-20
Identity = 68/205 (33.17%), Postives = 100/205 (48.78%), Query Frame = 1
Query:   64 HIKQLQAHLTTTGQFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINAPSTND-FNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            HIKQL AH+  T     KL    S +      S    L+YA  +F  I +P  +  FN  LR L+ SS+P   +L+Y+++     R D  +    LKA ++V ALFE +++H    +               +YA  G I  A+ VFDEM  RD+ +WN +I    +  L  EA  LF+ MK   V  P+E+ +   ++ACG  G
Sbjct:   27 HIKQLHAHILRT-VINHKL---NSFLFNLSVSSSSINLSYALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVM-PDEMILCNIVSACGRTG 226          

HSP 2 Score: 77.411 bits (189), Expect = 7.618e-14
Identity = 48/172 (27.91%), Postives = 80/172 (46.51%), Query Frame = 1
Query:  160 SPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            S    L  A  +F Q        +  ++     S  P  A+  + +M     + D ++    + ACA +  L +   +HS +  +              +YAK G + + + VF++M  R++ SW+++I  L+    AS+A+ LF RMK E V +PNEVT +G L  C H G
Sbjct:  289 SKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENV-EPNEVTFVGVLYGCSHSG 459          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.445e-20
Identity = 61/203 (30.05%), Postives = 98/203 (48.28%), Query Frame = 1
Query:   67 IKQLQAHLTTTGQFQSKLCPVRSKIIEFYALSPLNELAYAHALFRQINAPSTND-FNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 672
            +K     LT  G   + +  +   +     L     L++A  +F    +  T   +N+++RG A S     A+L + +M+      D  T  F L ACA+  A    +QIH  +++                YA+ GE+ SA+KVFDEM  R++ SW ++I G A+ + A +AVDLF RM  +    PN VT++  ++AC  L
Sbjct:   48 LKMFHRSLTKQG-LDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKL 249          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP147_ARATH (Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.193e-20
Identity = 58/183 (31.69%), Postives = 100/183 (54.64%), Query Frame = 1
Query:  127 VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            VRS +I+ +A   L E   A ++F ++       +N+I+ G A +S+   A+  +++M R    ++  T +  L+AC  +  L   +Q H H++++              +Y K G +  A +VF++M  RD+ +W+ +I+GLAQ   + EA+ LF+RMK  G  KPN +T++G L AC H G
Sbjct:  196 VRSALIDVFA--KLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVD--MYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGT-KPNYITIVGVLFACSHAG 373          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP251_ARATH (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.170e-20
Identity = 57/183 (31.15%), Postives = 92/183 (50.27%), Query Frame = 1
Query:  127 VRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            + S +++ YA S    +  +  +F ++       +N+++ G   + +   A+  +RQM+    +  A+  S  + ACA +  L    Q+H +VLR               +Y+K G I +A+K+FD M V D  SW A+I G A      EAV LF+ MK +GV KPN+V  +  L AC H+G
Sbjct:  279 IGSSLVDMYAKSA--RIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGV-KPNQVAFVAVLTACSHVG 458          

HSP 2 Score: 71.633 bits (174), Expect = 4.180e-12
Identity = 44/148 (29.73%), Postives = 70/148 (47.30%), Query Frame = 1
Query:  229 FNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHL 672
            +N I+ G A S    +A+   R+M     + D+ T S  L   +  + + +  +IH +V+R               +YAK   I  +++VF  +  RD  SWN+L+AG  Q    +EA+ LF++M    V KP  V     + AC HL
Sbjct:  210 YNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKV-KPGAVAFSSVIPACAHL 356          
BLAST of FC878063 vs. ExPASy Swiss-Prot
Match: PP214_ARATH (Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.585e-19
Identity = 52/179 (29.05%), Postives = 96/179 (53.63%), Query Frame = 1
Query:  133 SKIIEFYALSPLN-ELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACG 666
            S++I+F    P    L+YA ++F  I+ PS   +N+++RG ++S  P  A+++Y++MLR  +  D  T  + LKAC+ +  +     +H  V++               +Y   GE+    +VF+++   ++ +W +LI+G    N  S+A++ F+ M+  GV K NE  ++  L ACG
Sbjct:   42 SRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREMQSNGV-KANETIMVDLLVACG 219          

HSP 2 Score: 76.6406 bits (187), Expect = 1.299e-13
Identity = 53/193 (27.46%), Postives = 91/193 (47.15%), Query Frame = 1
Query:  106 FQSKL---CPVRSKIIEFYALSPLNELAYAHALFRQINAPSTNDFNAILRGLAHSSKPTNAVLWYRQMLRGSHRSDALTCSFALKACARVLALFETLQIHSHVLRHXXXXXXXXXXXXXXVYAKVGEIVSAKKVFDEMGVRDIASWNALIAGLAQGNLASEAVDLFKRMKMEGVFKPNEVTVLGALAACGHLG 675
            FQSK+     + + +I+ YA     +L  A  LF  +   +   +N+I+ G + +     A+  +  ML      D +T    ++A            IH++V +               +YAK G+  SAKK F+++  +D  +W  +I GLA     +EA+ +F+RM+ +G   P+ +T LG L AC H+G
Sbjct:  243 FQSKVGFNVILATSLIDMYA--KCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYACSHIG 433          
The following BLAST results are available for this feature:
BLAST of FC878063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
PPR71_ARATH1.470e-4948.43Pentatricopeptide repeat-containing protein At1g34... [more]
PP284_ARATH7.847e-2734.13Pentatricopeptide repeat-containing protein At3g56... [more]
PP169_ARATH1.385e-2333.17Pentatricopeptide repeat-containing protein At2g22... [more]
PP184_ARATH2.211e-2133.33Pentatricopeptide repeat-containing protein At2g34... [more]
PP182_ARATH2.211e-2129.41Pentatricopeptide repeat-containing protein At2g33... [more]
PP311_ARATH2.445e-2033.17Pentatricopeptide repeat-containing protein At4g14... [more]
PP249_ARATH2.445e-2030.05Pentatricopeptide repeat-containing protein At3g22... [more]
PP147_ARATH3.193e-2031.69Pentatricopeptide repeat-containing protein At2g03... [more]
PP251_ARATH4.170e-2031.15Putative pentatricopeptide repeat-containing prote... [more]
PP214_ARATH1.585e-1929.05Putative pentatricopeptide repeat-containing prote... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ12YE14RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878063 ID=FC878063; Name=FC878063; organism=Citrus clementina; type=EST; length=676bp
AATGCGCTAATCTCAACGCACTGTTACAAAAATGCAGTAGTAATGTCCCA
TTTCTCTCACATTCACATAAAGCAACTACAAGCTCACCTTACTACCACCG
GCCAATTCCAATCCAAATTGTGCCCCGTTCGATCCAAAATCATCGAATTT
TACGCGCTTTCTCCTCTCAACGAGCTCGCTTACGCACACGCTTTGTTCCG
CCAAATCAACGCGCCTTCCACCAACGACTTTAACGCTATCCTCCGAGGCC
TCGCCCACTCTTCGAAACCCACGAACGCCGTCCTATGGTACCGCCAAATG
TTACGCGGGTCCCACAGGTCCGACGCGCTCACGTGCTCGTTTGCTCTCAA
AGCATGCGCGCGTGTCCTGGCTTTGTTTGAGACTTTACAGATTCATTCGC
ACGTTTTGCGTCATGGGTTCTTGGCTGATGCGTTGTTGGGTACTACTTTG
TTGGATGTCTATGCGAAAGTTGGCGAGATTGTAAGTGCTAAGAAGGTGTT
TGATGAAATGGGTGTGAGAGACATTGCGTCGTGGAATGCGTTGATTGCTG
GGTTGGCTCAGGGGAATTTGGCGAGTGAAGCAGTTGATTTGTTTAAGAGG
ATGAAAATGGAGGGTGTTTTTAAGCCTAATGAGGTTACGGTTCTGGGAGC
TTTGGCGGCGTGTGGTCATTTGGGTG
back to top