FC878064
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878064 vs. ExPASy Swiss-Prot
Match: MGP_ARATH (Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 5.723e-59 Identity = 101/155 (65.16%), Postives = 125/155 (80.65%), Query Frame = 3 Query: 309 KRKRKPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQEVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDAC 773 K+KR G PDP+AEV++LSPKTL+ ++R++CEIC +GFQRDQNLQ+HRR H +PWKL +R ++EVRKRV+VCPE SC+HH P ALGDL GIKKHF RKH K+W C+KC K YAVQSD+KAH KTCGTR + CDCG +FSR +SFI H+ C Sbjct: 41 KKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKH-GEKKWKCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFC 194
BLAST of FC878064 vs. ExPASy Swiss-Prot
Match: JKD_ARATH (Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1) HSP 1 Score: 222.631 bits (566), Expect = 2.404e-57 Identity = 98/156 (62.82%), Postives = 125/156 (80.13%), Query Frame = 3 Query: 309 KRKRKPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQEV-RKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDAC 773 K+KR GTPDPDA+V++LSP TL+ ++R+VCEICN+GFQRDQNLQ+HRR H +PWKL +R QEV +K+V++CP +C+HHD ALGDL GIKKH+ RKH K+W C+KC+K YAVQSD+KAH KTCGTR + CDCG +FSR +SFI H+ C Sbjct: 53 KKKRNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKH-GEKKWKCEKCSKKYAVQSDWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFC 207
BLAST of FC878064 vs. ExPASy Swiss-Prot
Match: NUC_ARATH (Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 4.101e-57 Identity = 97/155 (62.58%), Postives = 123/155 (79.35%), Query Frame = 3 Query: 309 KRKRKPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQEVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDAC 773 K+KR G PDP+AEV++LSP TL+ ++R++CE+C +GFQRDQNLQ+HRR H +PWKL +R ++EVRKRV+VCPE +C+HH ALGDL GIKKHF RKH K+W C+KC K YAVQSD+KAH KTCGTR + CDCG +FSR +SFI H+ C Sbjct: 37 KKKRNLPGNPDPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKH-GEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFC 190
BLAST of FC878064 vs. ExPASy Swiss-Prot
Match: STOP1_ARATH (Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.517e-14 Identity = 46/156 (29.49%), Postives = 72/156 (46.15%), Query Frame = 3 Query: 336 PDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQEVRKRV----------FVCPEPSC---LHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCN-KGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEH 761 P E++ L + +L + C IC +GF+RD NL+MH R H +K + ++ V + CP C H L ++ +K H++R H + K + C +C+ K ++V +D K H K CG C CG FSR + H Sbjct: 224 PPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCD-KSFTCSRCHTKKFSVIADLKTHEKHCGKNKWLCSCGTTFSRKDKLFGH 378 The following BLAST results are available for this feature:
BLAST of FC878064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878064 ID=FC878064; Name=FC878064; organism=Citrus clementina; type=EST; length=908bpback to top |