FC878064

Overview
NameFC878064
Unique NameFC878064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length908
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878064_ssr11 microsatellite FC878064_ssr11:11..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12307 contig Ccv1_Contig12307:79..985. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878064 vs. ExPASy Swiss-Prot
Match: MGP_ARATH (Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.723e-59
Identity = 101/155 (65.16%), Postives = 125/155 (80.65%), Query Frame = 3
Query:  309 KRKRKPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQEVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDAC 773
            K+KR   G PDP+AEV++LSPKTL+ ++R++CEIC +GFQRDQNLQ+HRR H +PWKL +R ++EVRKRV+VCPE SC+HH P  ALGDL GIKKHF RKH   K+W C+KC K YAVQSD+KAH KTCGTR + CDCG +FSR +SFI H+  C
Sbjct:   41 KKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKH-GEKKWKCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFC 194          
BLAST of FC878064 vs. ExPASy Swiss-Prot
Match: JKD_ARATH (Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.404e-57
Identity = 98/156 (62.82%), Postives = 125/156 (80.13%), Query Frame = 3
Query:  309 KRKRKPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQEV-RKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDAC 773
            K+KR   GTPDPDA+V++LSP TL+ ++R+VCEICN+GFQRDQNLQ+HRR H +PWKL +R  QEV +K+V++CP  +C+HHD   ALGDL GIKKH+ RKH   K+W C+KC+K YAVQSD+KAH KTCGTR + CDCG +FSR +SFI H+  C
Sbjct:   53 KKKRNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKH-GEKKWKCEKCSKKYAVQSDWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFC 207          
BLAST of FC878064 vs. ExPASy Swiss-Prot
Match: NUC_ARATH (Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 4.101e-57
Identity = 97/155 (62.58%), Postives = 123/155 (79.35%), Query Frame = 3
Query:  309 KRKRKPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQEVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDAC 773
            K+KR   G PDP+AEV++LSP TL+ ++R++CE+C +GFQRDQNLQ+HRR H +PWKL +R ++EVRKRV+VCPE +C+HH    ALGDL GIKKHF RKH   K+W C+KC K YAVQSD+KAH KTCGTR + CDCG +FSR +SFI H+  C
Sbjct:   37 KKKRNLPGNPDPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKH-GEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFC 190          
BLAST of FC878064 vs. ExPASy Swiss-Prot
Match: STOP1_ARATH (Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.517e-14
Identity = 46/156 (29.49%), Postives = 72/156 (46.15%), Query Frame = 3
Query:  336 PDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQEVRKRV----------FVCPEPSC---LHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCN-KGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEH 761
            P    E++ L  + +L    + C IC +GF+RD NL+MH R H   +K      +  ++ V          + CP   C     H     L  ++ +K H++R H + K + C +C+ K ++V +D K H K CG     C CG  FSR +    H
Sbjct:  224 PPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCD-KSFTCSRCHTKKFSVIADLKTHEKHCGKNKWLCSCGTTFSRKDKLFGH 378          
The following BLAST results are available for this feature:
BLAST of FC878064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
MGP_ARATH5.723e-5965.16Zinc finger protein MAGPIE OS=Arabidopsis thaliana... [more]
JKD_ARATH2.404e-5762.82Zinc finger protein JACKDAW OS=Arabidopsis thalian... [more]
NUC_ARATH4.101e-5762.58Zinc finger protein NUTCRACKER OS=Arabidopsis thal... [more]
STOP1_ARATH2.517e-1429.49Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA80CB09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA80CB09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878064 ID=FC878064; Name=FC878064; organism=Citrus clementina; type=EST; length=908bp
CTCTTCATCTTCTCTCTCTCTCTCTCTCTGTGAAAAGAACTTAATGTGAG
AAAAGGAAAAAAAAAAAAAAACGCTTTCTTCTTTTCTTTCTCTTTTCCCC
CCTTCCTCTCCACCCATTTTGTTCTTTTTATCAGTAAAGCTGAAAAACAA
AGGCCGCTATTCCTGCATCACCACCACTTTGTAGTATCGCCTTGCTAGTC
AACAAAAATTCTAACCCCATGTTAGAAAACAACATCAATATTATTGCTCC
TTCTTCATCTTCTGATCCTTTCTCCTCTTCAGAAAATGGTGCTCTCGCTA
TTCATAACAAAAGGAAAAGAAAACCAGCAGGCACCCCAGATCCGGATGCA
GAGGTGGTTTCTTTATCACCCAAGACCTTGTTAGAATCAGACAGATATGT
ATGTGAGATCTGCAACCAAGGGTTTCAAAGAGACCAAAACCTGCAAATGC
ATAGAAGAAGGCACAAGGTGCCATGGAAGTTGCTGAAGAGAGAAACACAA
GAAGTGAGGAAGAGGGTTTTTGTTTGTCCAGAGCCAAGCTGCTTGCACCA
TGACCCTTGTCATGCTTTGGGAGATCTTGTTGGTATCAAAAAGCACTTTA
GAAGGAAGCACAGCAACCACAAGCAGTGGGTTTGTGACAAGTGCAATAAA
GGATATGCTGTTCAATCTGATTACAAAGCACATCTCAAAACTTGTGGTAC
TAGAGGCCATTCTTGTGACTGTGGCCGAGTGTTTTCCAGGGTTGAAAGTT
TCATTGAACACCAAGATGCTTGCACTATGCGGCGAGTCCAGCAGCCTGAA
TCGCAGGCAATGCATGCTCAGCCGGCTTGTTCATCAAGAACTGCTTCAAG
TACAAGTCCATCGAGTGATGCCAATTTCAGCATACCACCAGCTTTGCCAG
GACTGCCG
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