FC878067

Overview
NameFC878067
Unique NameFC878067
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878067_ssr574 microsatellite FC878067_ssr574:574..585. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7887 contig Ccv1_Contig7887:1..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878067 vs. ExPASy Swiss-Prot
Match: HEXC_BOMMO (Chitooligosaccharidolytic beta-N-acetylglucosaminidase OS=Bombyx mori PE=1 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.486e-68
Identity = 121/232 (52.16%), Postives = 166/232 (71.55%), Query Frame = 1
Query:  148 CVIAEEPSSEVVWRWACQEGKCQKTLHDSKDTDPPLSLEACKMFCNEFGLLWPMPTGEVDLGSFLAKINLDKVRVTSQRQGLSSGLTDAATRIFMEKIRNVVPKGAKPKSTGKSLDIYLNNENPDINEISLEVSERYSLRV-XXXXXXVNASLSADSFLGLRHGLETLAQLLLYDDIRDQILMVRDVTIEDKPVYPYRGILLDTARNYFDVDVIKQTLDAMATVKLNTFHWH 840
            C I        +WRW C+  +C K  ++ ++ +P LSLEACKMFC+++GLLWP PT E +LG+FL+KIN++ + +   +QG S  L  AA   F   + + VPKG   K+ GKS+ +YL NENP I E SL++ E Y L +       VNA++  +SF G+R+GLETL+QL++YDDIR+ +L+VRDVTI+D+PVYPYRGILLDTARN++ +D IK+T+DAMA VKLNTFHWH
Sbjct:   17 CGIPTAAEEHSLWRWTCENNRCTKIRNEPENKEPVLSLEACKMFCDDYGLLWPKPTIETNLGNFLSKINMNTIDIQITKQGKSDDLLTAAADRFKTLVSSSVPKGFSAKAAGKSVTVYLVNENPYIREFSLDMDESYELYISSTSSDKVNATIRGNSFFGVRNGLETLSQLIVYDDIRNNLLIVRDVTIKDRPVYPYRGILLDTARNFYSIDSIKRTIDAMAAVKLNTFHWH 248          
BLAST of FC878067 vs. ExPASy Swiss-Prot
Match: FDL_DROME (Probable beta-hexosaminidase fdl OS=Drosophila melanogaster GN=fdl PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.137e-18
Identity = 68/259 (26.25%), Postives = 116/259 (44.79%), Query Frame = 1
Query:  175 EVVWRWACQEGKCQKTLHDSKDTDPPLSLEACKMFCNEFGLLWPMPTGEVDLGSFLAKINLDKVRV---TSQRQ-------------------------GLSSGLTDAATRIFMEKIRNVVPK--------GAKPKSTGKSLDIYLNN-ENPDINEISLEVSERYSLRVXXXXXXVNASLSADSFLGLRHGLETLAQLLLYDDIRDQILMVRDVTIEDKPVYPYRGILLDTARNYFDVDVIKQTLDAMATVKLNTFHWH 840
            E  W + C+  +C +  H  K     +S  +C M C +  + WP PT +  L S     +++ V++   T+ R+                         G SS  T + +        ++ P         G K      S+ + ++  ++ D+N  SL+  E Y L        +   + A+S+ G RHGL TL QL+ +DD    +    +  ++D P + YRG++LDT+R++F V+ IK+T+  M   K+N FHWH
Sbjct:   58 EKSWTYKCENDRCMRVGHHGKSAKR-VSFISCSMTCGDVNI-WPHPTQKFLLSSQTHSFSVEDVQLHVDTAHREVRKQLQLAFDWFLKDLRLIQRLDYVGSSSEPTVSESSSKSRHHADLEPAATLFGATFGVKKAGDLTSVQVKISVLKSGDLN-FSLDNDETYQLSTQTEGHRLQVEIIANSYFGARHGLSTLQQLIWFDDEDHLLHTYANSKVKDAPKFRYRGLMLDTSRHFFSVESIKRTIVGMGLAKMNRFHWH 313          
BLAST of FC878067 vs. ExPASy Swiss-Prot
Match: HEXB_RAT (Beta-hexosaminidase subunit beta OS=Rattus norvegicus GN=Hexb PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.454e-13
Identity = 66/195 (33.85%), Postives = 91/195 (46.67%), Query Frame = 1
Query:  289 FGL---LWPMPTGEVDLGSFLAKINLDKVRVTSQRQ---GLSSGLTDAATRIFMEKI-----RNVVPKGAKPKSTGKSLDIYLNNENPDINEISLEVSERYSLRVXXXXXXVNASLSADSFLGLRHGLETLAQLLLYDDIRDQILMVRDVTIEDKPVYPYRGILLDTARNYFDVDVIKQTLDAMATVKLNTFHWH 840
            FGL   LWPMP   V +   L  I+ +  ++ +      G S  L   A R +   I     R+  P   + K   + L +++N E       S+   E YSL V        A L A+   G   GLET +QL+  D        + + TI D P +P+RGIL+DT+R+Y  V  I +TLDAMA  K N  HWH
Sbjct:   28 FGLQPALWPMPRS-VQVFPRLLYISPENFQIDNSPNSTAGPSCSLLLEAFRRYYNYIFGFYKRHHGPAKFQDKPQLEKLLVFINLEPQCDAFPSMSSDESYSLLVQEPV----ALLKANEVWGALRGLETFSQLVYQDAYGT--FTINESTIADSPRFPHRGILIDTSRHYLPVKTIFKTLDAMAFNKFNVLHWH 215          
BLAST of FC878067 vs. ExPASy Swiss-Prot
Match: HEXA_CAEEL (Beta-hexosaminidase A OS=Caenorhabditis elegans GN=hex-1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.218e-12
Identity = 57/184 (30.98%), Postives = 89/184 (48.37%), Query Frame = 1
Query:  292 GLLWPMPTGEVDLGSFLAKINLDKVRVTSQRQGLSSGLTDAATRIFMEKIRNVVPKGAKPKSTGKSL-DIYLNNENPDINEISLEVSERYSLRVXXXXXXVNASLSADSFLGLRHGLETLAQLLLYDDIRDQILMVRDVTIEDKPVYPYRGILLDTARNYFDVDVIKQTLDAMATVKLNTFHWH 840
            G +WP+P  ++  GS    I  DK+ +    +     L   A   +M K     P   K   T   +  + + +E P    +    SE Y LRV      +NA     +  G    +E+L+ L+ YD  + Q   +R V I DKP +P RGI++D++R++  V+VIK+ L+ M+  KLN  HWH
Sbjct:   32 GGVWPLPK-KIVYGSKNRTITYDKIGIDLGDKKDCDILLSMADN-YMNKWLFPFPVEMKTGGTEDFIITVTVKDECPSGPPVH-GASEEYLLRVSLTEAVINAQ----TVWGALRAMESLSHLVFYDH-KSQEYQIRTVEIFDKPRFPVRGIMIDSSRHFLSVNVIKRQLEIMSMNKLNVLHWH 207          
BLAST of FC878067 vs. ExPASy Swiss-Prot
Match: HEXA1_DICDI (Beta-hexosaminidase subunit A1 OS=Dictyostelium discoideum GN=hexa1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.218e-12
Identity = 46/156 (29.49%), Postives = 80/156 (51.28%), Query Frame = 1
Query:  391 LSSGLTDAATRIFMEKIRNVV---PKGAKPKSTGK---SLDIYLNNENPDINEISLEVSERYSLRVXXXXXXVNASLSADSFLGLRHGLETLAQLLLYDDIRDQILMVRDVTIEDKPVYPYRGILLDTARNYFDVDVIKQTLDAMATVKLNTFHWH 840
            + S +  A   + M++  N+       ++P S      S+ IY ++E      + L + E YSL +       +  L A +  G   GLET  QL++Y+++ +   +V  V+I D P YP+RG ++D+AR+Y   ++I   +D++   K NT HWH
Sbjct:   47 IESNIESATFSVSMDRYTNLFFPFSNESEPSSNESFLLSVTIYSDDET-----LQLGIDESYSLSIEQG----SYQLKATNIYGAMRGLETFKQLIVYNELENSYSIVC-VSISDSPRYPWRGFMVDSARHYIPKNMILHMIDSLGFSKFNTLHWH 192          
BLAST of FC878067 vs. ExPASy Swiss-Prot
Match: HEXB_MOUSE (Beta-hexosaminidase subunit beta OS=Mus musculus GN=Hexb PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.077e-12
Identity = 43/102 (42.16%), Postives = 56/102 (54.90%), Query Frame = 1
Query:  535 SLEVSERYSLRVXXXXXXVNASLSADSFLGLRHGLETLAQLLLYDDIRDQILMVRDVTIEDKPVYPYRGILLDTARNYFDVDVIKQTLDAMATVKLNTFHWH 840
            SL   E YSL V        A L A+S  G   GLET +QL+  D        + + +I D P +P+RGIL+DT+R++  V  I +TLDAMA  K N  HWH
Sbjct:  121 SLSSDETYSLLVQEPV----AVLKANSVWGALRGLETFSQLVYQDSFGT--FTINESSIADSPRFPHRGILIDTSRHFLPVKTILKTLDAMAFNKFNVLHWH 216          
BLAST of FC878067 vs. ExPASy Swiss-Prot
Match: HEXB_FELCA (Beta-hexosaminidase subunit beta OS=Felis catus GN=HEXB PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.713e-12
Identity = 60/191 (31.41%), Postives = 87/191 (45.55%), Query Frame = 1
Query:  298 LWPMPTGEVDLGSFLAKINLDKVRV---TSQRQGLSSGLTDAATRIFMEKIRNVVPKGAKPKSTGKSLD-------IYLNNENPDINEISLEVSERYSLRVXXXXXXVNASLSADSFLGLRHGLETLAQLLLYDDIRDQILMVRDVTIEDKPVYPYRGILLDTARNYFDVDVIKQTLDAMATVKLNTFHWH 840
            LWPMP   V     L  ++ D   +    S   G +  L   A R + E I     +  +P     +++       + L++E      I+ +  E Y+L V        A L A+   G+  GLET +QL+  D        V +  I D P +P+RGIL+DTAR++  V  I +TLDAMA  K N  HWH
Sbjct:   30 LWPMPLS-VKTSPRLLHLSRDNFSIGYGPSSTAGPTCSLLQEAFRRYHEYIFGFDKRQRRPAKPNSAIELQQLLVTVVLDSECDLFPNITSD--ESYTLLVKEPV----AFLKANRVWGVLRGLETFSQLIYQDSYGT--FTVNESDIIDSPRFPHRGILIDTARHFLPVKSILKTLDAMAFNKFNVLHWH 211          
BLAST of FC878067 vs. ExPASy Swiss-Prot
Match: HEXA_CAEBR (Beta-hexosaminidase A OS=Caenorhabditis briggsae GN=hex-1 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.713e-12
Identity = 38/98 (38.78%), Postives = 57/98 (58.16%), Query Frame = 1
Query:  547 SERYSLRVXXXXXXVNASLSADSFLGLRHGLETLAQLLLYDDIRDQILMVRDVTIEDKPVYPYRGILLDTARNYFDVDVIKQTLDAMATVKLNTFHWH 840
            SE Y LRV      +NA     +  G    +ETL+ L+ YD  + Q   +R   I DKP +P RGI++D++R++  ++VIK+ L+ M+  KLN  HWH
Sbjct:  112 SEEYLLRVSVSEAVINAQ----TVWGALRAMETLSHLVFYDQ-KSQEYQIRTAEIFDKPRFPVRGIMIDSSRHFLSLNVIKRQLEIMSMNKLNVLHWH 204          
BLAST of FC878067 vs. ExPASy Swiss-Prot
Match: HEX1_CANAL (Beta-hexosaminidase OS=Candida albicans GN=HEX1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.044e-12
Identity = 35/104 (33.65%), Postives = 63/104 (60.58%), Query Frame = 1
Query:  529 EISLEVSERYSLRVXXXXXXVNASLSADSFLGLRHGLETLAQLLLYDDIRDQILMVRDVTIEDKPVYPYRGILLDTARNYFDVDVIKQTLDAMATVKLNTFHWH 840
            ++ L V+E Y+L++      ++A+ +     G  HGL +L QL+++    D+ ++   VTI D P + +RG+++D+ RN+  VD I + +D MA  K+N+ HWH
Sbjct:  105 DLQLGVNESYTLKINTDGINIHAATT----WGALHGLVSLQQLIIHTS-EDKYVVPSSVTISDFPNFKHRGLMIDSGRNFLTVDSILEQIDIMALSKMNSLHWH 203          
BLAST of FC878067 vs. ExPASy Swiss-Prot
Match: HEXB2_DICDI (Beta-hexosaminidase subunit B2 OS=Dictyostelium discoideum GN=hexb2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.031e-11
Identity = 33/79 (41.77%), Postives = 53/79 (67.09%), Query Frame = 1
Query:  607 ADSFLGLRHGLETLAQLLLYDDIRDQILMVR-DVTIEDKPVYPYRGILLDTARNYFDVDVIKQTLDAMATVKLNTFHWH 840
            A++  G   GLETL Q++ +D  R+   +      I+D P YP+RG++LDT+R+++ VDV+K+ ++A+A  K N FHWH
Sbjct:  154 AETVYGAIRGLETLYQMIGFDYQREYYQIKHCPWIIQDSPRYPHRGVMLDTSRHFYSVDVLKEFIEALAYNKFNVFHWH 232          
The following BLAST results are available for this feature:
BLAST of FC878067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
HEXC_BOMMO3.486e-6852.16Chitooligosaccharidolytic beta-N-acetylglucosamini... [more]
FDL_DROME1.137e-1826.25Probable beta-hexosaminidase fdl OS=Drosophila mel... [more]
HEXB_RAT2.454e-1333.85Beta-hexosaminidase subunit beta OS=Rattus norvegi... [more]
HEXA_CAEEL1.218e-1230.98Beta-hexosaminidase A OS=Caenorhabditis elegans GN... [more]
HEXA1_DICDI1.218e-1229.49Beta-hexosaminidase subunit A1 OS=Dictyostelium di... [more]
HEXB_MOUSE2.077e-1242.16Beta-hexosaminidase subunit beta OS=Mus musculus G... [more]
HEXB_FELCA2.713e-1231.41Beta-hexosaminidase subunit beta OS=Felis catus GN... [more]
HEXA_CAEBR2.713e-1238.78Beta-hexosaminidase A OS=Caenorhabditis briggsae G... [more]
HEX1_CANAL6.044e-1233.65Beta-hexosaminidase OS=Candida albicans GN=HEX1 PE... [more]
HEXB2_DICDI1.031e-1141.77Beta-hexosaminidase subunit B2 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA8CB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA8CB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878067 ID=FC878067; Name=FC878067; organism=Citrus clementina; type=EST; length=841bp
CTGGTTGTCGCTGAAGGCCTGTTACGTTTCGCCGAGTTACGATTATATTC
AAACTAATTCACTTGATGATCTAAACAGTTCCCGATAACAATGTGGGAAC
GATATCACCTGGCTCCTCTGTCGCTGCTCATTCTGGCGTCACTGACATGC
GTCATAGCGGAAGAGCCGAGCAGCGAGGTGGTGTGGCGCTGGGCGTGCCA
GGAAGGGAAATGCCAGAAGACGTTACACGACTCCAAGGACACGGACCCCC
CCCTCAGCCTGGAGGCGTGCAAGATGTTCTGCAATGAATTCGGTCTGCTG
TGGCCCATGCCCACGGGGGAGGTGGACCTGGGCAGCTTCCTCGCCAAGAT
CAACCTGGACAAGGTGCGCGTGACGTCACAGCGACAGGGTCTCTCCAGCG
GCCTGACGGACGCCGCCACCAGGATATTTATGGAAAAAATCCGCAATGTG
GTCCCCAAGGGCGCGAAACCAAAATCTACCGGGAAGTCATTGGACATCTA
CCTGAACAACGAAAACCCTGACATCAACGAGATATCCCTGGAGGTGTCGG
AGCGCTACTCTTTGCGGGTGGGGGGCGGCGGCGGCGGGGTCAACGCCTCG
CTGTCGGCCGACTCCTTCCTCGGCCTGCGCCACGGGCTCGAGACGCTCGC
GCAGCTCCTGCTCTACGACGACATCAGGGACCAGATACTGATGGTGAGGG
ATGTGACCATTGAAGACAAGCCGGTGTACCCGTACAGGGGGATCCTGCTT
GACACCGCCAGGAATTACTTCGACGTCGACGTCATCAAACAGACTCTAGA
CGCAATGGCCACAGTGAAGCTGAACACGTTCCACTGGCACA
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