FC878073

Overview
NameFC878073
Unique NameFC878073
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length893
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878073_ssr4 microsatellite FC878073_ssr4:4..13. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7888 contig Ccv1_Contig7888:1..893. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878073 vs. ExPASy Swiss-Prot
Match: KSG4_ARATH (Shaggy-related protein kinase delta OS=Arabidopsis thaliana GN=ASK4 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.581e-64
Identity = 119/164 (72.56%), Postives = 135/164 (82.32%), Query Frame = 3
Query:  402 VDWLGREMLEMRLRDQVDNDEDRDSEPDIIDGVGAETGHVIRTTIGGRNGNSKQKVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHCFFSTTDKXXXXXXXXXXXXXXTVNRIARNYSRIHQRMPFIYVKLYTY 893
            VDWL R+MLEM++RD+ + DE+RDSEPDIIDGVGAE GHVI TT+ GRNG S+Q VSYIAEHVVGTGSFG+VFQAKCRETGE+VAIKKVLQDKRYKNRELQIMQMLDHPN+V LKH F+S T+               TVNR AR+YSR++Q MP IYVKLYTY
Sbjct:   25 VDWLSRDMLEMKIRDKTEADEERDSEPDIIDGVGAEPGHVITTTLPGRNGQSRQTVSYIAEHVVGTGSFGMVFQAKCRETGEVVAIKKVLQDKRYKNRELQIMQMLDHPNVVCLKHSFYSRTENEEVYLNLVLEFVPETVNRTARSYSRMNQLMPLIYVKLYTY 188          
BLAST of FC878073 vs. ExPASy Swiss-Prot
Match: KSG10_ARATH (Shaggy-related protein kinase kappa OS=Arabidopsis thaliana GN=ASK10 PE=1 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 4.402e-64
Identity = 119/164 (72.56%), Postives = 134/164 (81.71%), Query Frame = 3
Query:  402 VDWLGREMLEMRLRDQVDNDEDRDSEPDIIDGVGAETGHVIRTTIGGRNGNSKQKVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHCFFSTTDKXXXXXXXXXXXXXXTVNRIARNYSRIHQRMPFIYVKLYTY 893
            VDWL R++ E R+RD+V+ D++RDSEPDIIDG GAE GHVIRTT+ GRNG S+Q VSYI+EHVVGTGSFG+VFQAKCRETGE+VAIKKVLQDKRYKNRELQIMQMLDHPN VALKH FFS TD               TVNR+AR+YSR +Q MP IYVKLYTY
Sbjct:   26 VDWLTRDLAETRIRDKVETDDERDSEPDIIDGAGAEPGHVIRTTLRGRNGQSRQTVSYISEHVVGTGSFGMVFQAKCRETGEVVAIKKVLQDKRYKNRELQIMQMLDHPNAVALKHSFFSRTDNEEVYLNLVLEFVPETVNRVARSYSRTNQLMPLIYVKLYTY 189          
BLAST of FC878073 vs. ExPASy Swiss-Prot
Match: MSK1_MEDSA (Glycogen synthase kinase-3 homolog MsK-1 OS=Medicago sativa GN=MSK-1 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.017e-52
Identity = 102/163 (62.58%), Postives = 123/163 (75.46%), Query Frame = 3
Query:  405 DWLGREMLEMRLRDQVDNDEDRDSEPDIIDGVGAETGHVIRTTIGGRNGNSKQKVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHCFFSTTDKXXXXXXXXXXXXXXTVNRIARNYSRIHQRMPFIYVKLYTY 893
            D L  EM +M++RD      DR+ E  ++DG G ETGH+I TTIGGRNG  KQ +SY+AE VVG GSFGVVFQAKC ETGE VAIKKVLQDKRYKNRELQ M++LDHPN+V+LKHCFFSTT+K              TV+R+ ++YS+++QRMP IYVKLYTY
Sbjct:   25 DILPEEMSDMKIRD------DREMEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVHRVIKHYSKLNQRMPMIYVKLYTY 181          
BLAST of FC878073 vs. ExPASy Swiss-Prot
Match: KSG1_ARATH (Shaggy-related protein kinase alpha OS=Arabidopsis thaliana GN=ASK1 PE=2 SV=3)

HSP 1 Score: 204.912 bits (520), Expect = 5.049e-52
Identity = 100/164 (60.98%), Postives = 124/164 (75.61%), Query Frame = 3
Query:  402 VDWLGREMLEMRLRDQVDNDEDRDSEPDIIDGVGAETGHVIRTTIGGRNGNSKQKVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHCFFSTTDKXXXXXXXXXXXXXXTVNRIARNYSRIHQRMPFIYVKLYTY 893
            VD L  EM +M++RD      D++ E  ++DG G ETGH+I TTIGGRNG  KQ +SY+AE VVG GSFGVVFQAKC ETGE VAIKKVLQD+RYKNRELQ M++LDHPN+V+LKHCFFSTT+K              TV+R+ ++Y++++QRMP IYVKLYTY
Sbjct:   18 VDKLPEEMNDMKIRD------DKEMEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDRRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVHRVIKHYNKLNQRMPLIYVKLYTY 175          
BLAST of FC878073 vs. ExPASy Swiss-Prot
Match: MSK1_TOBAC (Shaggy-related protein kinase NtK-1 OS=Nicotiana tabacum GN=NTK-1 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.582e-51
Identity = 100/164 (60.98%), Postives = 122/164 (74.39%), Query Frame = 3
Query:  402 VDWLGREMLEMRLRDQVDNDEDRDSEPDIIDGVGAETGHVIRTTIGGRNGNSKQKVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHCFFSTTDKXXXXXXXXXXXXXXTVNRIARNYSRIHQRMPFIYVKLYTY 893
            VD L  EM +MR+RD      D++ E  I+DG G ETGH+I TTIGGR+G  KQ +SY+AE +VG GSFGVVFQAKC ETGE VAIKKVLQDKRYKNRELQ M++LDHPN+V LKHCFFSTT+K              TV+R+ ++Y++++QRMP I VKLYTY
Sbjct:   22 VDRLPEEMNDMRIRD------DKEIEAAIVDGNGTETGHIIVTTIGGRHGQPKQTISYMAERIVGQGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVCLKHCFFSTTEKDEVYLNLVLEYVPETVHRVIKHYNKLNQRMPLILVKLYTY 179          
BLAST of FC878073 vs. ExPASy Swiss-Prot
Match: MSK2_MEDSA (Glycogen synthase kinase-3 homolog MsK-2 OS=Medicago sativa GN=MSK-2 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.618e-50
Identity = 99/164 (60.37%), Postives = 120/164 (73.17%), Query Frame = 3
Query:  402 VDWLGREMLEMRLRDQVDNDEDRDSEPDIIDGVGAETGHVIRTTIGGRNGNSKQKVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHCFFSTTDKXXXXXXXXXXXXXXTVNRIARNYSRIHQRMPFIYVKLYTY 893
            VD L  E+L MR++D      D++ E  ++DG   E GHVI TTIGG+NG  KQ +SY+AE  VG GSFGVVFQAKC ETGE VAIKKVLQDKRYKNRELQ M++LDHPN+V LKHCFFSTT+K              TV+R+ R+YS+++QRMP IYVKLY+Y
Sbjct:   23 VDKLPDEILGMRIKD------DKEMEAHVVDGNSTEAGHVIVTTIGGKNGQPKQTISYMAERAVGQGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVTLKHCFFSTTEKDELYLNLVLEFVPETVHRVIRHYSKMNQRMPLIYVKLYSY 180          
BLAST of FC878073 vs. ExPASy Swiss-Prot
Match: KSG5_ARATH (Shaggy-related protein kinase epsilon OS=Arabidopsis thaliana GN=ASK5 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.618e-50
Identity = 95/155 (61.29%), Postives = 118/155 (76.13%), Query Frame = 3
Query:  429 EMRLRDQVDNDEDRDSEPDIIDGVGAETGHVIRTTIGGRNGNSKQKVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHCFFSTTDKXXXXXXXXXXXXXXTVNRIARNYSRIHQRMPFIYVKLYTY 893
            EM+++D      D++ E  ++DG G ETGH+I TTIGG+NG  KQ +SY+AE +VG GSFG+VFQAKC ETGE VAIKKVLQDKRYKNRELQ M++LDHPN+V+LKHCFFSTT+K              TV R++++YSR +QRMP IYVKLYTY
Sbjct:   32 EMKIKD------DKEMEAAVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERIVGQGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVYRVSKHYSRANQRMPIIYVKLYTY 180          
BLAST of FC878073 vs. ExPASy Swiss-Prot
Match: MSK3_MEDSA (Glycogen synthase kinase-3 homolog MsK-3 OS=Medicago sativa GN=MSK-3 PE=2 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 4.725e-50
Identity = 100/165 (60.61%), Postives = 124/165 (75.15%), Query Frame = 3
Query:  402 VDWLGREMLEMRLRDQVDNDEDRDSEP-DIIDGVGAETGHVIRTTIGGRNGNSKQKVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHCFFSTTDKXXXXXXXXXXXXXXTVNRIARNYSRIHQRMPFIYVKLYTY 893
            V+ L  EM +M++RD      D++ E   I+DG G ETGH+I TTIGG+NG  KQ +SY+AE VVG GSFGVVFQAKC ETGE VAIKKVLQDKRYKNRELQ M++LDHPN+V+LKHCFFSTT+K              TV+R+ R+Y++++QRMP IYVKLY+Y
Sbjct:   22 VEKLPEEMNDMKIRD------DKEMEAATIVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVSRVIRHYNKMNQRMPMIYVKLYSY 180          
BLAST of FC878073 vs. ExPASy Swiss-Prot
Match: KSG3_ARATH (Shaggy-related protein kinase gamma OS=Arabidopsis thaliana GN=ASK3 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.375e-49
Identity = 96/163 (58.90%), Postives = 122/163 (74.85%), Query Frame = 3
Query:  405 DWLGREMLEMRLRDQVDNDEDRDSEPDIIDGVGAETGHVIRTTIGGRNGNSKQKVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHCFFSTTDKXXXXXXXXXXXXXXTVNRIARNYSRIHQRMPFIYVKLYTY 893
            D L  EM +M+++D      D++ E  I++G   ETGH+I TTIGGRNG  KQ +SY+AE VVG GSFGVVFQAKC ETGE VAIKKVLQD+RYKNRELQ M++LDHPN+V+LKHCFFSTT+K              TV+R+ ++Y++++QRMP +YVKLYTY
Sbjct:   23 DRLPEEMKDMKIQD------DKEMEATIVNGNVTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDRRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVHRVIKHYNKLNQRMPLVYVKLYTY 179          
BLAST of FC878073 vs. ExPASy Swiss-Prot
Match: KSG8_ARATH (Shaggy-related protein kinase theta OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 6.823e-49
Identity = 96/164 (58.54%), Postives = 123/164 (75.00%), Query Frame = 3
Query:  405 DWLGREMLEMRLRDQVD-NDEDRDSEPDIIDGVGAETGHVIRTTIGGRNGNSKQKVSYIAEHVVGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALKHCFFSTTDKXXXXXXXXXXXXXXTVNRIARNYSRIHQRMPFIYVKLYTY 893
            D L   M+EM++RD+ + N ED+D E  +++G G ETG VI TT+GGR+G  KQ +SY+A+ VVGTGSFGVVFQAKC ETGE VAIKKVLQDKRYKNRELQIM++ DHPN+V L+H FFSTTDK              TV R +++Y++++Q MP I+V+LYTY
Sbjct:   81 DQLPDVMIEMKIRDERNANREDKDMETTVVNGSGTETGQVITTTVGGRDGKPKQTISYMAQRVVGTGSFGVVFQAKCLETGEQVAIKKVLQDKRYKNRELQIMRLQDHPNVVRLRHSFFSTTDKDELYLNLVLEYVPETVYRASKHYTKMNQHMPIIFVQLYTY 244          
The following BLAST results are available for this feature:
BLAST of FC878073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
KSG4_ARATH2.581e-6472.56Shaggy-related protein kinase delta OS=Arabidopsis... [more]
KSG10_ARATH4.402e-6472.56Shaggy-related protein kinase kappa OS=Arabidopsis... [more]
MSK1_MEDSA1.017e-5262.58Glycogen synthase kinase-3 homolog MsK-1 OS=Medica... [more]
KSG1_ARATH5.049e-5260.98Shaggy-related protein kinase alpha OS=Arabidopsis... [more]
MSK1_TOBAC5.582e-5160.98Shaggy-related protein kinase NtK-1 OS=Nicotiana t... [more]
MSK2_MEDSA3.618e-5060.37Glycogen synthase kinase-3 homolog MsK-2 OS=Medica... [more]
KSG5_ARATH3.618e-5061.29Shaggy-related protein kinase epsilon OS=Arabidops... [more]
MSK3_MEDSA4.725e-5060.61Glycogen synthase kinase-3 homolog MsK-3 OS=Medica... [more]
KSG3_ARATH1.375e-4958.90Shaggy-related protein kinase gamma OS=Arabidopsis... [more]
KSG8_ARATH6.823e-4958.54Shaggy-related protein kinase theta OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA8CB12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA8CB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878073 ID=FC878073; Name=FC878073; organism=Citrus clementina; type=EST; length=893bp
CTTTCTCTCTCTCTTCAATCAACGAAACAGAACTAAAAAAGAACAAAATC
AAAATTAAAAAAATAAAACAGCAAAAATTAAAAGCAAAAAATCAGATCAG
CAAACAGTTTTCTACTTCTACCTGTTTTGTTTTAATTGCTTCGATTTTCA
TCTCATAAGCGTTCAAATTTTGTGAAGCTGAAAGCTGCAGAATGCGTGGA
ATTTGCTTCCACTTCTCGTTGAAGCGCTTCCAGATAGGTGTTTGGGTGGT
ACAGAAGGCACGACCTCAGAGCATCTGGAGGGTAGCGAATACTAGTATCT
GGAATACTCTCGAGTTTGTATAAATGGCATCTGCCAGCCTAGGGAATGGG
GGAGTGGGCAGTTCCAGGTCTGTTAACGGCTTCAAGAGTTCATCAAGTTC
GGTTGACTGGTTGGGGAGAGAAATGCTTGAAATGAGATTGCGGGACCAGG
TGGACAATGATGAAGACAGAGATAGTGAACCAGATATCATTGATGGTGTG
GGTGCTGAAACTGGACACGTCATACGAACAACGATTGGTGGTCGAAATGG
CAATTCTAAACAGAAAGTTAGTTATATAGCTGAGCATGTGGTTGGAACTG
GTTCTTTTGGTGTTGTCTTTCAAGCAAAATGTAGAGAAACTGGAGAGATT
GTTGCTATCAAGAAGGTTCTCCAAGACAAGCGCTATAAGAATAGGGAGTT
ACAGATTATGCAGATGTTGGACCATCCAAATATTGTTGCCCTTAAGCATT
GTTTCTTTTCAACAACAGACAAGGAAGAGCTTTACTTGAATCTTGTGCTT
GAATATGTTCCTGAAACCGTTAATCGAATTGCAAGGAACTACAGCAGAAT
CCACCAGCGGATGCCCTTTATATATGTTAAACTCTATACCTAT
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