FC878077

Overview
NameFC878077
Unique NameFC878077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length878
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12758 contig Ccv1_Contig12758:808..1685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878077 vs. ExPASy Swiss-Prot
Match: SAP8_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. japonica GN=SAP8 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.662e-13
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = -2 
Query:  767 VHRYSDKHDCPFDYRTAAREAIAKANPVVKAEKLDKI 877
            +HRYSDKHDC FDYRTAAR+AIAKANPVVKAEKLDKI
Sbjct:  135 MHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI 171
[Close]
BLAST of FC878077 vs. ExPASy Swiss-Prot
Match: SAP8_ORYSI (Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. indica GN=SAP8 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 7.662e-13
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = -2 
Query:  767 VHRYSDKHDCPFDYRTAAREAIAKANPVVKAEKLDKI 877
            +HRYSDKHDC FDYRTAAR+AIAKANPVVKAEKLDKI
Sbjct:  135 MHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI 171
[Close]
BLAST of FC878077 vs. ExPASy Swiss-Prot
Match: SAP4_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 4 OS=Oryza sativa subsp. japonica GN=SAP4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.229e-12
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = -2 
Query:  767 VHRYSDKHDCPFDYRTAAREAIAKANPVVKAEKLDKI 877
            +HRYSDKH+C FDYRTAAR+AIAKANPVVKAEKLDKI
Sbjct:  137 LHRYSDKHECQFDYRTAARDAIAKANPVVKAEKLDKI 173
The following BLAST results are available for this feature:
BLAST of FC878077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SAP8_ORYSJ7.662e-1391.89Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP8_ORYSI7.662e-1391.89Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP4_ORYSJ2.229e-1289.19Zinc finger A20 and AN1 domain-containing stress-a... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA42CH02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA42CH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878077 ID=FC878077; Name=FC878077; organism=Citrus clementina; type=EST; length=878bp
TTAATATGGTATTATAACCATAAATATATGTAAATCAGCAAGGAGTCATA
GAGTCAGAACAATGATTCTCAGTAGAAAGCAACTATTCATGCAAAGTGTG
ATATTTTAGGAGGAGAAGACAATATCACCAAACTGCTAGAAGAGATGATA
AGTACTGCACCAGATGGCAGTAGATTAGCTTCAAAGATGCACCTAGTGCC
GCAAATAAATATCTGTTTATGAAACAGAAAAATGCACATCAACCATAGAG
CAATAACAAAAAGCATTCAGATATGGATACAACAACACCGAGAGATAACT
GAATCTAACTGAAAGTAGTGAGAAGAAAACATCAGTCGCAATCAGTGCAA
AGCTCATACTTAAGGAGGATAAGGTGAGAACATAGACAGCTGAAGGATAA
AAGTAGTAATACAAGAAATGGCAGGAGAATAGTTGATAGATGTTTCGATG
TACTGCAAATACCGATTTTTTTTTCCCTCATTTACTACTACAAGGAAATG
CATACCAACCAGAAGCAATATTACAAATTAACCACAAAGTTGTCCATCAA
AACCAGGCACAAATAGAGACTTACACACTGGAGCCAACAAGGGAATCCTT
GCCAATCAGCAAGGAATATAACTGCAATGATGTCCTAAAAATCATGACCT
GAAACCATTTATACCAATAAAGGACATCTAACCAGACAAGAAACCAACTT
ATATCATGCGTGCATAAAAAGAAAAGCATCATATTCTTTGCATAAACCTT
CAGTTCATCACTTCTAGATTTTGTCAAGTTTCTCCGCCTTCACGACAGGG
TTGGCTTTAGCAATTGCTTCCCGAGCAGCAGTCCTATAATCAAACGGGCA
GTCGTGCTTGTCAGAGTATCGGTGAACT
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