FC878087

Overview
NameFC878087
Unique NameFC878087
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length885
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878087_ssr7 microsatellite FC878087_ssr7:7..18. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13770 contig Ccv1_Contig13770:22..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878087 vs. ExPASy Swiss-Prot
Match: PHAM_PHAVU (Leucoagglutinating phytohemagglutinin OS=Phaseolus vulgaris GN=PDLEC2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.051e-17
Identity = 79/249 (31.73%), Postives = 119/249 (47.79%), Query Frame = 1
Query:  136 LSLVFCLFVINNAVITISTATEFDFGTLTLASLKLLGDAHMNN-GSVRLTR-----DVTVPYDGAGKALYSKPVRFRLPGTHTPAXXXXXXXXXITNLNPSSIGAGLAFVITPDGEQVGSAGGSLGLLDEKGAGLGFVAVEFDTLMDVEFSDINGNHVGLDLNSMVSTQVVNLDTINVDLKSGDLVNSWIEYDGLTRAFNISVSYSNLKPKVPILSFTLDLDQYVNDFMYVGFS---GSTQGSTEIHSI 855
            LSL   L ++ +A    ++ T F F      +L L GDA +++ G +RLT      + TV     G+A YS P++     T   A         I   N +    GLAF + P G Q    GG LGL D   +    VAVEFDTL + ++ D    H+G+D+NS+ S +    D +N     G+     I Y+  T+    S+ Y +LK    + S T+DL   + +++ VGFS   G T+G+ E + I
Sbjct:    7 LSLALFLVLLTHA--NSASQTFFSFDRFNETNLILQGDASVSSSGQLRLTNVNSNGEPTV--GSLGRAFYSAPIQIWDYTTGNVASFDTNFTFNILVPNNAGPADGLAFALVPVGSQPKDKGGFLGLFDGSNSNFHTVAVEFDTLYNKDW-DPRERHIGIDVNSIKSIKTTPWDFVN-----GENAEVHITYESSTKLLVASLVYPSLKTSFTV-SDTVDLKSVLPEWVSVGFSATTGITKGNVETNDI 244          
BLAST of FC878087 vs. ExPASy Swiss-Prot
Match: LECG_ARAHY (Galactose-binding lectin OS=Arachis hypogaea PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 8.895e-17
Identity = 68/243 (27.98%), Postives = 121/243 (49.79%), Query Frame = 1
Query:  148 FCLFVINNAVITISTATEFDFGTLTLAS--LKLLGDAH-MNNGSVRLTRDVTVPYDGAGKALYSKPVRFRLPGTHTPAXXXXXXXXXITNLNPSSIGAGLAFVITPDGEQVGSA---GGSLGLLDEKGAGLGFVAVEFDTLMDVEFSDINGNHVGLDLNSMVSTQVVNLDTINVDLKSGDLVNSWIEYDGLTRAFNISVSYSNLKPKVPILSFTLDLDQYVNDFMYVGFSGS-TQGSTEIHSI 855
            F L   ++  +  +    F+F + +  +  +   GD   ++NG+++LT    V  +  G+ LY+ PVR     T   A         + ++       G+ F I P+  Q+ +    GG+LG+ D KGAG  FV VEFDT  + E++D   +HVG+D+NS+ S + V  +++     SG +V   + YD  T+  +++V+  N    +  ++  +DL   + + +  GFS S + G  +IH I
Sbjct:   11 FLLLAASSKKVDSAETVSFNFNSFSEGNPAINFQGDVTVLSNGNIQLTNLNKV--NSVGRVLYAMPVRIWSSATGNVASFLTSFSFEMKDIKDYDPADGIIFFIAPEDTQIPAGSIGGGTLGVSDTKGAG-HFVGVEFDTYSNSEYNDPPTDHVGIDVNSVDSVKTVPWNSV-----SGAVVKVTVIYDSSTKTLSVAVTNDN--GDITTIAQVVDLKAKLPERVKFGFSASGSLGGRQIHLI 243          
BLAST of FC878087 vs. ExPASy Swiss-Prot
Match: PHAE_PHAVU (Erythroagglutinating phytohemagglutinin OS=Phaseolus vulgaris GN=DLEC1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.588e-16
Identity = 81/249 (32.53%), Postives = 119/249 (47.79%), Query Frame = 1
Query:  136 LSLVFCLFVINNAVITISTATEFDFGTLTLASLKLLGDAHMNN-GSVRLTR--DVTVP-YDGAGKALYSKPVRFRLPGTHTPAXXXXXXXXXITNLNPSSIGAGLAFVITPDGEQVGSAGGSLGLLD--EKGAGLGFVAVEFDTLMDVEFSDINGNHVGLDLNSMVSTQVVNLDTINVDLKSGDLVNSWIEYDGLTRAFNISVSYSNLKPKVPILSFTLDLDQYVNDFMYVGF---SGSTQGSTEIHSI 855
            LSL   L ++ +A    ++ T F F      +L L  DA +++ G +RLT   D   P     G+A YS P++     T   A         I   N S    GLAFV+ P G Q    GG LGL +  +  +    VAVEFDTL +V + D    H+G+D+NS+ S     + T   D   G+     I YD  T+    S+ Y +LK    I+S T+DL   + +++ VGF   +G T+G+ E + I
Sbjct:    7 LSLALFLVLLTHA--NSASQTSFSFQRFNETNLILQRDATVSSKGQLRLTNVNDNGEPTLSSLGRAFYSAPIQIWDNTTGAVAASPTSFTFNIDVPNNSGPADGLAFVLLPVGSQPKDKGGLLGLFNNYKYDSNAHTVAVEFDTLYNVHW-DPKPRHIGIDVNSIKS-----IKTTTWDFVKGENAEVLITYDSSTKLLVASLVYPSLKTSF-IVSDTVDLKSVLPEWVIVGFTATTGITKGNVETNDI 246          
BLAST of FC878087 vs. ExPASy Swiss-Prot
Match: PHAL_PHAVU (Leucoagglutinating phytohemagglutinin OS=Phaseolus vulgaris GN=DLEC2 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.530e-16
Identity = 73/241 (30.29%), Postives = 111/241 (46.06%), Query Frame = 1
Query:  154 LFVINNAVITISTATEFDFGTLTLASLKLLGDAHMNN-GSVRLTR---DVTVPYDGAGKALYSKPVRFRLPGTHTPAXXXXXXXXXITNLNPSSIGAGLAFVITPDGEQVGSAGGSLGLLDEKGAGLGFVAVEFDTLMDVEFSDINGNHVGLDLNSMVSTQVVNLDTINVDLKSGDLVNSWIEYDGLTRAFNISVSYSNLKPKVPILSFTLDLDQYVNDFMYVGFSGST---QGSTEIHSI 855
            LF++       S    F+F      +L L  DA +++ G +RLT    +        G+A YS P++     T T A         I   N +    GLAF + P G Q    GG LGL D   +    VAVEFDTL + ++ D    H+G+D+NS+ S +    D +N     G+     I YD  T     S+ Y + K    I+S T+DL   + +++ VGFS +T   +G+ E + +
Sbjct:   10 LFLVLLTHANSSNDIYFNFQRFNETNLILQRDASVSSSGQLRLTNLNGNGEPRVGSLGRAFYSAPIQIWDNTTGTVASFATSFTFNIQVPNNAGPADGLAFALVPVGSQPKDKGGFLGLFDGSNSNFHTVAVEFDTLYNKDW-DPTERHIGIDVNSIRSIKTTRWDFVN-----GENAEVLITYDSSTNLLVASLVYPSQKTSF-IVSDTVDLKSVLPEWVSVGFSATTGINKGNVETNDV 243          
BLAST of FC878087 vs. ExPASy Swiss-Prot
Match: LEC1_DOLBI (Seed lectin subunit I OS=Dolichos biflorus PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.284e-15
Identity = 69/254 (27.17%), Postives = 118/254 (46.46%), Query Frame = 1
Query:  121 LTSLNLSLVFCLFVINNAVITISTATEFDFGTLTLASLKLLGDAHMNNGSVRLTR----DVTVPYDGAGKALYSKPVRFRLPGTHTPAXXXXXXXXXITNLNPSSIGAGLAFVITPDGEQVGSAGGSLGLLDEK--GAGLGFVAVEFDTLMDVEFSDINGNHVGLDLNSMVSTQVVNLDTINVDLKSGDLVNSWIEYDGLTRAFNISVSYSNLKPKVPILSFTLDLDQYVNDFMYVGFSGST---QGSTEIHSI 855
            + S  +S+V  LF++       +    F F      S  L GDA +++G ++LT+     +  P    G+A YS P++     T   A         I+  + +S   G+AF + P G +    GG LG+ D          VAVEFDT  +  + D +  H+G+D+NS+ S     + T++ DL +G+     I Y+  T     S+ + + +    ILS  +D+   + +++ VGFS +T   +G  E H +
Sbjct:    1 MASSTVSVVLSLFLLLLTQANSANIQSFSFKNFNSPSFILQGDATVSSGKLQLTKVKENGIPTP-SSLGRAFYSSPIQIYDKSTGAVASWATSFTVKISAPSKASFADGIAFALVPVGSEPRRNGGYLGVFDSDVYNNSAQTVAVEFDTFSNSGW-DPSMKHIGIDVNSIKS-----IATVSWDLANGENAEILITYNAATSLLVASLVHPSRRTSY-ILSERVDITNELPEYVSVGFSATTGLSEGYIETHDV 246          
BLAST of FC878087 vs. ExPASy Swiss-Prot
Match: LCS1_ROBPS (Seed agglutinin 1 OS=Robinia pseudoacacia PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.881e-15
Identity = 59/194 (30.41%), Postives = 96/194 (49.48%), Query Frame = 1
Query:  259 NNGSVRLTRDVT--VPYDGAGKALYSKPVRFRLPGTHTPAXXXXXXXXXITNLNPSSIGAGLAFVITPDGEQVGSAGGSLGLLDEKGAGLG--FVAVEFDTLMDVEFSDINGNHVGLDLNSMVSTQVVNLDTINVDLKSGDLVNSWIEYDGLTRAFNISVSYSNLKPKVPILSFTLDLDQYVNDFMYVGFSGST 828
            + G ++LT  V    P    G+ALY+ P +     T   A         I   NP++   GLAF + P   Q G  GG LG+  +         VAVEFDT  ++ F D  G H+G+++NS+VS + V  +  N     G++ N +I Y+  T++ N S+ Y +L+    I+   +D+   + +++  GFS +T
Sbjct:   59 STGVLQLTNVVNGVPPRRSIGRALYAAPFQIWDNTTGNVASFVTSFSFIIQAPNPATTADGLAFFLAPVDTQPGDLGGMLGIFKDGSYNKSNQIVAVEFDTFSNIHF-DPKGRHMGINVNSIVSVKTVPWNWTN-----GEVANVFISYEASTKSLNASLVYPSLETSF-IIHAIVDVKDVLPEWVRFGFSATT 245          
BLAST of FC878087 vs. ExPASy Swiss-Prot
Match: LCB2_ROBPS (Bark agglutinin I polypeptide B OS=Robinia pseudoacacia PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.375e-15
Identity = 75/242 (30.99%), Postives = 115/242 (47.52%), Query Frame = 1
Query:  121 LTSLNLSLVFCLFVINNAVITISTATEFDFGTLTLASLKLLGDAHMNN-GSVRLT--RDVTVPYDGAGKALYSKPVRFRLPGTHTPAXXXXXXXXXITNLNPSSIGAGLAFVITPDGE-QVGSAGGSLGLLDEKGAGLG--FVAVEFDTLMDVEFSDINGNHVGLDLNSMVSTQVVNLDTINVDLKSGDLVNSWIEYDGLTRAFNISVSYSNLKPKVPILSFTLDLDQYVNDFMYVGFSGST 828
            L  L++S  F L ++N    T S +  F     +   L    DA + + G ++LT   D    YD  G+ LY+ P +     T   A         I   N      GL F + P G  Q    GG LGL  ++        VAVEFDT  +V + D NG H+G+D+NS+ S + V  D  N     G++ N +I Y+  T++   S+ Y +L+ K  ILS  +DL + + +++ VGF+ +T
Sbjct:   13 LLLLSISFFF-LLLLNKVNSTGSLSFSFPKFKHSQPDLIFQSDALVTSKGVLQLTTVNDGRPVYDSIGRVLYAAPFQIWDSTTGNVASFVTSFSFIIKAPNEGKTADGLVFFLAPVGSTQPLKGGGLLGLFKDESYNKSNQIVAVEFDTFRNVAW-DPNGIHMGIDVNSIQSVRTVRWDWAN-----GEVANVFISYEASTKSLTASLVYPSLE-KSFILSAIVDLKKVLPEWVRVGFTATT 246          
BLAST of FC878087 vs. ExPASy Swiss-Prot
Match: LECS_SOPJA (Seed lectin OS=Sophora japonica PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.326e-15
Identity = 72/248 (29.03%), Postives = 120/248 (48.39%), Query Frame = 1
Query:  130 LNLSLVFCLFVINNAVITISTATEFDFGTLTLAS----LKLLGDAHMNN-GSVRLTR-DVTVP-YDGAGKALYSKPVRFRLPGTHTPAXXXXXXXXXITNLNPSSIGAGLAFVITPDGEQV-GSAGGSLGLLDEKGAGLGF--VAVEFDTLMDVEFSDINGNHVGLDLNSMVSTQVVNLDTINVDLKSGDLVNSWIEYDGLTRAFNISVSYSNLKPKVPILSFTLDLDQYVNDFMYVGFSGSTQGSTE 843
            L +S+ F L ++N     +++A    F     AS    L L GDA +++ G ++LT  +  VP ++  G+ALY  PV      T   A         +     S    G+AF + P   Q+ G  GG LGL    G    +  +AV+FDT   +   D N  H+G+D+NS+ ST+     T+    ++G++ N  I Y   T    +S++Y + +    ILS  +DL   + +++ VGF+ +T  +T+
Sbjct:   21 LAISITFFLLLLNK----VNSAEILSFSFPKFASNQEDLLLQGDALVSSKGELQLTTVENGVPIWNSTGRALYYAPVHIWDKSTGRVASFATSFSFVVKAPVASKSADGIAFFLAPPNNQIQGPGGGHLGLFHSSGYNSSYQIIAVDFDT--HINAWDPNTRHIGIDVNSINSTK-----TVTWGWQNGEVANVLISYQAATETLTVSLTYPSSQTSY-ILSAAVDLKSILPEWVRVGFTAATGLTTQ 256          
BLAST of FC878087 vs. ExPASy Swiss-Prot
Match: LEC5_DOLBI (Lectin DB58 OS=Dolichos biflorus PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.326e-15
Identity = 68/253 (26.88%), Postives = 114/253 (45.06%), Query Frame = 1
Query:  121 LTSLNLSLVFCLFVINNAVITISTATEFDFGTLTLASLKLLGDAHMNNGSVRLTR---DVTVPYDGAGKALYSKPVRFRLPGTHTPAXXXXXXXXXITNLNPSSIGAGLAFVITPDGEQVGSAGGSLGLLDEK--GAGLGFVAVEFDTLMDVEFSDINGNHVGLDLNSMVSTQVVNLDTINVDLKSGDLVNSWIEYDGLTRAFNISVSYSNLKPKVPILSFTLDLDQYVNDFMYVGFSGST---QGSTEIHSI 855
            + S  +S+V  LF++       +    F F     +S  L GDA +++  +RLT+   +        G+A YS P++     T   A         I   N SS   G+AF + P G +  S  G LG+ D          VAVEFDT  + ++ D    H+G+D+NS+ S     + T +  L +G      I Y+  T     S+ + + +    I+S  +D+   + +++ +GFS +T   +G TE H +
Sbjct:    1 MASSTVSVVLSLFLLLLTQAYSADIQSFSFKNFNSSSFILQGDATVSSSKLRLTKVKGNGLPTLSSLGRAFYSSPIQIYDKSTGAVASWATSFTANIFAPNKSSSADGIAFALVPVGSEPKSNSGFLGVFDSDVYDNSAQTVAVEFDTFSNTDW-DPTSRHIGIDVNSIKS-----IRTASWGLANGQNAEILITYNAATSLLVASLVHPSRRTSY-IVSERVDITNELPEYVSIGFSATTGLSEGYTETHDV 246          
BLAST of FC878087 vs. ExPASy Swiss-Prot
Match: LCB3_ROBPS (Putative bark agglutinin LECRPA3 (Fragment) OS=Robinia pseudoacacia PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.326e-15
Identity = 66/222 (29.73%), Postives = 107/222 (48.20%), Query Frame = 1
Query:  202 FDFGTLTLAS--LKLLGDAH-MNNGSVRLTRDVTVPYDGAGKALYSKPVRFRLPGTHTPAXXXXXXXXXITNLNPSSIGAGLAFVITPDGE-QVGSAGGSLGLLDEKGAGLGFVAVEFDTLMDVEFSDINGNHVGLDLNSMVSTQVVNLDTINVDLKSGDLVNSWIEYDGLTRAFNISVSYSNLKPKVPILSFTLDLDQYVNDFMYVGFSGSTQGSTEIHSI 855
            F+F   T     + LLG A+ M NG + LT   T P    G+ALYSKPV      T   A         +  +  +    G+ F + P+      SAGG LG+++   A   FV VEFDT  +    D    H+G+D +S++S + V  + +     SG LV   I YD L++  ++ V++ N   ++  ++  +DL   + + + VGF+ +T    E++ I
Sbjct:   35 FNFTNFTRGDQGVTLLGQANIMANGILALTNH-TNPTWNTGRALYSKPVPIWDSATGNVASFVTSFSFVVQEIKGAIPADGIVFFLAPEARIPDNSAGGQLGIVNANKAYNPFVGVEFDTYSN--NWDPKSAHIGIDASSLISLRTVKWNKV-----SGSLVKVSIIYDSLSKTLSVVVTHEN--GQISTIAQVVDLKAVLGEKVRVGFTAATTTGRELYDI 246          
The following BLAST results are available for this feature:
BLAST of FC878087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PHAM_PHAVU1.051e-1731.73Leucoagglutinating phytohemagglutinin OS=Phaseolus... [more]
LECG_ARAHY8.895e-1727.98Galactose-binding lectin OS=Arachis hypogaea PE=1 ... [more]
PHAE_PHAVU2.588e-1632.53Erythroagglutinating phytohemagglutinin OS=Phaseol... [more]
PHAL_PHAVU7.530e-1630.29Leucoagglutinating phytohemagglutinin OS=Phaseolus... [more]
LEC1_DOLBI1.284e-1527.17Seed lectin subunit I OS=Dolichos biflorus PE=1 SV... [more]
LCS1_ROBPS4.881e-1530.41Seed agglutinin 1 OS=Robinia pseudoacacia PE=1 SV=... [more]
LCB2_ROBPS6.375e-1530.99Bark agglutinin I polypeptide B OS=Robinia pseudoa... [more]
LECS_SOPJA8.326e-1529.03Seed lectin OS=Sophora japonica PE=2 SV=1[more]
LEC5_DOLBI8.326e-1526.88Lectin DB58 OS=Dolichos biflorus PE=1 SV=2[more]
LCB3_ROBPS8.326e-1529.73Putative bark agglutinin LECRPA3 (Fragment) OS=Rob... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA76CA01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA76CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878087 ID=FC878087; Name=FC878087; organism=Citrus clementina; type=EST; length=885bp
CTCTCTCTCACTCACTCAAAAATCTCGTGAGAATTTAATCTTCTTCTTCA
AAAAACAAATAGTAACCAATGAGCTTCCGCCATTTCTAATTAGACAATGT
TGCTATTTTCTTGCAAAATTTTGACGTCTCTTAACCTATCTCTCGTGTTT
TGTCTCTTCGTCATCAACAATGCTGTAATAACAATCTCCACCGCAACTGA
ATTCGACTTCGGCACTTTAACTTTAGCCAGCTTAAAGCTTCTGGGTGACG
CCCACATGAACAATGGGAGCGTGCGCCTCACTCGTGACGTCACCGTCCCC
TACGACGGCGCCGGCAAGGCCCTCTACTCCAAACCAGTCAGATTCCGGCT
GCCCGGGACTCACACCCCGGCGAGCTTCTCGACCTTCTTCTCCTTCTCAA
TAACCAACCTCAACCCGTCCTCGATAGGCGCCGGGCTTGCATTCGTCATC
ACTCCGGACGGCGAGCAGGTCGGCTCAGCCGGCGGCTCGCTGGGGCTTCT
AGACGAGAAAGGGGCCGGGTTGGGGTTCGTTGCAGTGGAATTTGACACTT
TAATGGACGTTGAGTTCAGTGACATTAATGGAAACCACGTGGGTTTGGAT
CTAAACAGTATGGTTTCTACTCAGGTTGTTAATTTGGATACCATAAATGT
TGATCTTAAGAGCGGCGATCTTGTGAATTCTTGGATTGAATACGACGGAT
TGACTCGGGCTTTTAATATATCCGTTTCGTATTCTAATTTAAAGCCGAAA
GTTCCAATTTTGTCCTTCACTCTTGATCTAGATCAATACGTCAATGATTT
TATGTACGTTGGATTCTCTGGGTCAACTCAAGGAAGTACAGAGATTCACA
GTATAGAATGGTGGAGTTTTTAGTCATCATTTGAG
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