FC878095
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878095 vs. ExPASy Swiss-Prot
Match: HNRPR_HUMAN (Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR PE=1 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 7.034e-33 Identity = 70/206 (33.98%), Postives = 127/206 (61.65%), Query Frame = 3 Query: 156 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 767 P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+V+NL +T++ L++ F+ GK Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGK 366
BLAST of FC878095 vs. ExPASy Swiss-Prot
Match: HNRPQ_HUMAN (Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2) HSP 1 Score: 139.428 bits (350), Expect = 2.046e-32 Identity = 70/206 (33.98%), Postives = 126/206 (61.17%), Query Frame = 3 Query: 156 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 767 P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++VK L+V+NL +T++ L++ F+ GK Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGK 363
BLAST of FC878095 vs. ExPASy Swiss-Prot
Match: HNRPQ_RAT (Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 2.673e-32 Identity = 70/206 (33.98%), Postives = 126/206 (61.17%), Query Frame = 3 Query: 156 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 767 P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++VK L+V+NL +T++ L++ F+ GK Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGK 273
BLAST of FC878095 vs. ExPASy Swiss-Prot
Match: HNRPQ_MOUSE (Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus GN=Syncrip PE=1 SV=2) HSP 1 Score: 139.043 bits (349), Expect = 2.673e-32 Identity = 70/206 (33.98%), Postives = 126/206 (61.17%), Query Frame = 3 Query: 156 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGK 767 P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++VK L+V+NL +T++ L++ F+ GK Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGK 363
BLAST of FC878095 vs. ExPASy Swiss-Prot
Match: RBM46_MOUSE (Probable RNA-binding protein 46 OS=Mus musculus GN=Rbm46 PE=4 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 6.162e-29 Identity = 73/202 (36.14%), Postives = 116/202 (57.43%), Query Frame = 3 Query: 156 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFA 755 PP G EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LYV+NL T++ +K F+ Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFS 257
BLAST of FC878095 vs. ExPASy Swiss-Prot
Match: RBM46_MACFA (Probable RNA-binding protein 46 OS=Macaca fascicularis GN=RBM46 PE=2 SV=2) HSP 1 Score: 127.487 bits (319), Expect = 8.047e-29 Identity = 73/201 (36.32%), Postives = 115/201 (57.21%), Query Frame = 3 Query: 156 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELF 752 PP G EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LYV+NL T++ +K F Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEF 256
BLAST of FC878095 vs. ExPASy Swiss-Prot
Match: RBM46_HUMAN (Probable RNA-binding protein 46 OS=Homo sapiens GN=RBM46 PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 8.047e-29 Identity = 73/201 (36.32%), Postives = 115/201 (57.21%), Query Frame = 3 Query: 156 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELF 752 PP G EV++G IP D +D+L + G++ E R+M + SGE +GYAFV + TKE A AI LN+ E++ GK I + RLFIG +P+ ++++ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L + V WADP + + +VK LYV+NL T++ +K F Sbjct: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMM-EFSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEF 256
BLAST of FC878095 vs. ExPASy Swiss-Prot
Match: RBM46_DANRE (Probable RNA-binding protein 46 OS=Danio rerio GN=rbm46 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 2.341e-28 Identity = 69/202 (34.16%), Postives = 121/202 (59.90%), Query Frame = 3 Query: 156 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFA 755 PP G EV++G IP D +D+L + G + E R+M + SGE +GYAFV + T+E A +AI+ L++ E++ GK I + RLFIG++P++ ++++++ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L + V WA+P + + +V+ LYV+NL T++ L+ F+ Sbjct: 41 PPRGREVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMM-EFSGENRGYAFVMYTTREKAQRAIQLLDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGVMDVIVYPSAVDRMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELDEETMQRVRVLYVRNLMLSTTEETLRSEFS 241
BLAST of FC878095 vs. ExPASy Swiss-Prot
Match: A1CF_HUMAN (APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 3.058e-28 Identity = 66/203 (32.51%), Postives = 117/203 (57.64%), Query Frame = 3 Query: 150 ALPPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELF 752 A P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K A AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L + V WA+P + S VK LYV+NL +++ +++ F Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEF 251
BLAST of FC878095 vs. ExPASy Swiss-Prot
Match: A1CF_RAT (APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 3.994e-28 Identity = 64/201 (31.84%), Postives = 117/201 (58.21%), Query Frame = 3 Query: 156 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELF 752 P G E+++G +P D +D+L C+ IG++ E+R+M + G +GYAFVTF K+ A AI++LN+ E++ G+ + A+ RLF+G +P+ +++ + K+ GV+ + + + +NRGFAF+EY +H A +R+++ + +L + V WA+P + S VK LYV+NL +++ +++ F Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEF 251 The following BLAST results are available for this feature:
BLAST of FC878095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 29
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878095 ID=FC878095; Name=FC878095; organism=Citrus clementina; type=EST; length=768bpback to top |