FC878102

Overview
NameFC878102
Unique NameFC878102
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8174 contig Ccv1_Contig8174:102..503. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878102 vs. ExPASy Swiss-Prot
Match: FCL2_ARATH (Putative GDP-L-fucose synthase 2 OS=Arabidopsis thaliana GN=GER2 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.125e-41
Identity = 85/105 (80.95%), Postives = 92/105 (87.62%), Query Frame = 2
Query:   86 SNKDSCSFLSEKSAKIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAF 400
            S   S SF+ EKSAKIFVAGHRGLVGSAIVRKL   GFTNL+LRTH+ELDLT QSDVESFFA EKP YVI+AAAKVGGIHANNTYPA+FI +NLQIQTNVI SA+
Sbjct:    7 SEMKSGSFMLEKSAKIFVAGHRGLVGSAIVRKLQDQGFTNLVLRTHSELDLTSQSDVESFFATEKPVYVILAAAKVGGIHANNTYPADFIGVNLQIQTNVIHSAY 111          
BLAST of FC878102 vs. ExPASy Swiss-Prot
Match: FCL1_ARATH (GDP-L-fucose synthase 1 OS=Arabidopsis thaliana GN=GER1 PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 7.780e-40
Identity = 80/97 (82.47%), Postives = 90/97 (92.78%), Query Frame = 2
Query:  110 LSEKSAKIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAF 400
            +S+KSAKIFVAGHRGLVGSAIVRKL   GFTNL+L+THAELDLTRQ+DVESFF+ EKP YVI+AAAKVGGIHANNTYPA+FI +NLQIQTNVI SA+
Sbjct:    1 MSDKSAKIFVAGHRGLVGSAIVRKLQEQGFTNLVLKTHAELDLTRQADVESFFSQEKPVYVILAAAKVGGIHANNTYPADFIGVNLQIQTNVIHSAY 97          
BLAST of FC878102 vs. ExPASy Swiss-Prot
Match: FCL1_ORYSJ (Probable GDP-L-fucose synthase 1 OS=Oryza sativa subsp. japonica GN=Os06g0652400 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.956e-39
Identity = 76/100 (76.00%), Postives = 93/100 (93.00%), Query Frame = 2
Query:  104 SFLSEKSAKIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFR 403
            SFL++K  K+FVAGHRGLVGSAI+R L+SLGFTN+++RTHAELDLTRQSDVE+FFAAE P YV++AAAKVGGIHAN+T+PA+FIA NLQIQTNV+D+A +
Sbjct:   12 SFLADKGGKVFVAGHRGLVGSAILRHLVSLGFTNVVVRTHAELDLTRQSDVEAFFAAELPRYVVLAAAKVGGIHANSTFPADFIAANLQIQTNVVDAALK 111          
BLAST of FC878102 vs. ExPASy Swiss-Prot
Match: FCL2_ORYSJ (Putative GDP-L-fucose synthase 2 OS=Oryza sativa subsp. japonica GN=Os06g0652300 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.571e-32
Identity = 69/116 (59.48%), Postives = 91/116 (78.45%), Query Frame = 2
Query:   56 AADPDLLMGDSNKDSCSFLSEKSAKIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFR 403
            A D D   GD +  + SFL +KSAK+F+AGHRG+VGSA+ RKL +LGFTN+++RT AELDL  Q+ VE+FFAAE P YVI+AAAKVGG+HA++  PAE++  NL+I  NV+D+A R
Sbjct:   15 AGDAD---GDGDAAAVSFLGDKSAKVFIAGHRGMVGSAVHRKLDALGFTNVVVRTRAELDLACQAAVEAFFAAELPRYVILAAAKVGGVHASSAAPAEYLTENLRITVNVVDAARR 127          
BLAST of FC878102 vs. ExPASy Swiss-Prot
Match: FCL_ECOLI (GDP-L-fucose synthetase OS=Escherichia coli (strain K12) GN=fcl PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.847e-20
Identity = 49/90 (54.44%), Postives = 65/90 (72.22%), Query Frame = 2
Query:  128 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSA 397
            ++F+AGHRG+VGSAI R+L   G   L+LRT  EL+L     V  FFA+E+   V +AAAKVGGI ANNTYPA+FI  N+ I++N+I +A
Sbjct:    5 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAA 94          
BLAST of FC878102 vs. ExPASy Swiss-Prot
Match: Y4AF_RHISN (Uncharacterized protein y4aF OS=Rhizobium sp. (strain NGR234) GN=NGR_a00420 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.992e-19
Identity = 50/92 (54.35%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  128 KIFVAGHRGLVGSAIVRKLLSLGFTNLLLRTHAELDLTRQSDVESFFAAEKPSYVIVAAAKVGGIHANNTYPAEFIAINLQIQTNVIDSAFR 403
            +I+VAGH+G+VGSAI+R L S     +++    +LDLTRQ +VE F   EKP  VI+AAAKVGGI AN+T PA+FI  NL ++ NVI+ +FR
Sbjct:   10 RIWVAGHKGMVGSAIIRSLASED-CEVIVADRQKLDLTRQEEVEKFLLKEKPHAVIMAAAKVGGILANDTMPADFIYQNLIMEANVIEGSFR 100          
The following BLAST results are available for this feature:
BLAST of FC878102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
FCL2_ARATH4.125e-4180.95Putative GDP-L-fucose synthase 2 OS=Arabidopsis th... [more]
FCL1_ARATH7.780e-4082.47GDP-L-fucose synthase 1 OS=Arabidopsis thaliana GN... [more]
FCL1_ORYSJ2.956e-3976.00Probable GDP-L-fucose synthase 1 OS=Oryza sativa s... [more]
FCL2_ORYSJ4.571e-3259.48Putative GDP-L-fucose synthase 2 OS=Oryza sativa s... [more]
FCL_ECOLI6.847e-2054.44GDP-L-fucose synthetase OS=Escherichia coli (strai... [more]
Y4AF_RHISN1.992e-1954.35Uncharacterized protein y4aF OS=Rhizobium sp. (str... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA30BA04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA30BA04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878102 ID=FC878102; Name=FC878102; organism=Citrus clementina; type=EST; length=403bp
AAAATCCACTCTAATCGCAATCGCCTCCGAACGAACTCCCACTCACACTG
ACTTCGCAGCCGATCCGGACTTACTTATGGGAGACTCAAACAAGGATTCA
TGTTCCTTCCTCTCCGAAAAATCCGCCAAGATCTTCGTCGCCGGCCACCG
CGGCCTAGTCGGCTCCGCCATAGTCCGGAAACTCCTCTCCCTAGGCTTCA
CCAATCTCCTCCTCCGCACCCACGCTGAGCTCGATCTCACTCGCCAATCC
GACGTCGAATCATTCTTTGCCGCCGAGAAACCTAGCTACGTCATCGTGGC
CGCCGCCAAAGTCGGGGGCATCCACGCCAACAACACTTACCCGGCCGAAT
TCATCGCCATCAACCTCCAAATCCAAACCAATGTCATCGACTCCGCCTTC
CGT
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