FC878116
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878116 vs. ExPASy Swiss-Prot
Match: BRAP_MOUSE (BRCA1-associated protein OS=Mus musculus GN=Brap PE=1 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 1.496e-44 Identity = 99/257 (38.52%), Postives = 139/257 (54.09%), Query Frame = 1 Query: 70 DDEPFRQPLPEMISDDASAFDNAATQT--------FAFSSGNPRIEETRGVMHLFXXXXXXXXXXXXXXXXXXNRNLPVGRKPLVCVLGVPNHMTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFNSLEEEVCHVLFTVDVQFTGYTGSLEHVQPAPASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQ--QQPEKSICFVCQTSENLWMCVI 810 + +P P+ S + S N A ++ +F SGNP +E G+MHL+ V R ++CVL VP MT D +F A F I +M+I+R D +QY VLI+F +Q AD FY NGRQFNS+E++VC +++ V+ S + TE P C VCLER+D+ +GILTT+CNHSFH C+ +W D++CPVCRYCQ + E++ CF C ENLW+C+I Sbjct: 90 EKKPSAAPVSAQRSREQSESVNTAPESPSKQLPDQISFFSGNPSVEIVHGIMHLYKTNKMTSLKED------------VRRSAMLCVLTVPATMTSHDLMKFVAPFNDVIEQMKIIR-DSTPNQYMVLIKFSAQADADSFYMACNGRQFNSIEDDVCQLVY---VERAEVLKSEDGASLPVMDLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTTCPVCRYCQTPEPVEENKCFECGVQENLWICLI 330
BLAST of FC878116 vs. ExPASy Swiss-Prot
Match: BRAP_HUMAN (BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 2.551e-44 Identity = 100/251 (39.84%), Postives = 136/251 (54.18%), Query Frame = 1 Query: 64 AGDDEPFRQPLPEMISDDASAFDNAATQTFAFSSGNPRIEETRGVMHLFXXXXXXXXXXXXXXXXXXNRNLPVGRKPLVCVLGVPNHMTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFNSLEEEVCHVLFTVDVQFTGYTGSLEHVQPAPASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQ--QQPEKSICFVCQTSENLWMCVI 810 A D P +Q LP+ IS F SGNP +E G+MHL+ V R ++C+L VP MT D +F A F I +M+I+R D +QY VLI+F +Q AD FY NGRQFNS+E++VC +++ V+ S + TE P C VCLER+D+ +GILTT+CNHSFH C+ +W D++CPVCRYCQ + E++ CF C ENLW+C+I Sbjct: 113 AAPDSPSKQ-LPDQIS---------------FFSGNPSVEIVHGIMHLYKTNKMTSLKED------------VRRSAMLCILTVPAAMTSHDLMKFVAPFNDVIEQMKIIR-DSTPNQYMVLIKFRAQADADSFYMTCNGRQFNSIEDDVCQLVY---VERAEVLKSEDGASLPVMDLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTTCPVCRYCQTPEPVEENKCFECGVQENLWICLI 331
BLAST of FC878116 vs. ExPASy Swiss-Prot
Match: YQOE_CAEEL (Uncharacterized RING finger protein EEED8.16 OS=Caenorhabditis elegans GN=EEED8.16 PE=1 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 3.954e-29 Identity = 73/222 (32.88%), Postives = 111/222 (50.00%), Query Frame = 1 Query: 154 AFSSGNPRIEETRGVMHLFXXXXXXXXXXXXXXXXXXNRNLPVGRKPLVCVLGVPNHMTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFNSLEEEVCHVLFTVDVQFTGYTGSLEHVQPAPASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQQPE---KSICFVCQTSENLWMCVI 810 A+ SGNP E+T G+MH + + V + ++C+ VP + + F + I+ +++VR D +QY ++I+F + A FY+ FN FN LE C + F ++ T S + S TE P+C VCLER+D +L +CNHSFH C+ +W D++CPVCRY Q PE + C C S +LW+C+I Sbjct: 125 AYYSGNPLTEKTEGIMHFYKYND--------------EKLTKVAQCRMLCMYAVPAQVEVREIISFMCISLPMIVSIKVVR-DPAPNQYMLIIKFKEHNDAVTFYEEFNNCPFNDLESYCCTLFFVDRIECTT---SNDLFSSDDTSLTELPTCAVCLERMDDS---VLAILCNHSFHARCLEQWADNTCPVCRYV-QSPEVVAEQRCNDCGMSNDLWICLI 324
BLAST of FC878116 vs. ExPASy Swiss-Prot
Match: ETP1_YEAST (RING finger protein ETP1 OS=Saccharomyces cerevisiae GN=ETP1 PE=1 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 9.740e-28 Identity = 64/206 (31.07%), Postives = 103/206 (50.00%), Query Frame = 1 Query: 283 GRKPLVCVLGVPNHMTYADFCQFCAS---FIQHILEMRIVRTD--GMDDQYSVLIRFDSQDSADKFYQHFNGRQFNSLEEEVCHVLFTVDVQFTG---------------YTGSLEHVQPAPASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRY----------CQQQPEKSICFVCQTSENLWMCVI 810 G ++C+L VP + T D F + + RI+R GM ++VLI+F + A F + FNG+ F+ ++ E CHV+ ++ F T + E P+CPVCLER+D +T+G++T C H+FHC C++KW +S CPVCR+ +Q + + C C +++NLW+C+I Sbjct: 110 GDDTMICILFVPTYFTVHDLLHFYIGDDIVNKQVSNFRILRNQQKGMGFNFTVLIKFRNALDAKNFKEEFNGKSFSRMDPETCHVISVKEIVFQKKLFQRPAANEDFPYLLTDPFTVKKKKELVKVELPTCPVCLERMDSETTGLVTIPCQHTFHCQCLNKWKNSRCPVCRHSSLRLSRESLLKQAGDSAHCATCGSTDNLWICLI 315
BLAST of FC878116 vs. ExPASy Swiss-Prot
Match: EPT1_SCHPO (RING finger protein ETP1 homolog OS=Schizosaccharomyces pombe GN=SPAC16E8.13 PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 9.740e-28 Identity = 79/242 (32.64%), Postives = 123/242 (50.83%), Query Frame = 1 Query: 160 SSGNPRIEET---RGVMHLFXXXXXXXXXXXXXXXXXXNRNLPVGRKPLVCVLGVPNHMTYADFCQF-----CASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFNSLEEEVCHVLFT--VDVQF---TGYTGSLEHVQPAPASST---------EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQQPE---KSICFVCQTSENLWMCVI 810 SS P +EET GV+HL+ ++ +L +P +M+ +D F C S IQHI R+++T ++ L++F Q S +FY FNG+ F+ ++ E CHVL V++++ + + S E P+S E P+C VCLER+D +G++T +C H+FHC C+ KW +SSCPVCRY Q+ +S C VC ++LW+C+I Sbjct: 53 SSKVPEVEETSLGHGVVHLYRVFPSESHEFDAPGL-------------ILAILAIPLYMSPSDVLGFLGEKHCKS-IQHI---RLLKTKD-PNRIMALLKFKDQASVIRFYTEFNGKAFSQIDPETCHVLHIDKVNIKYPMESSDSSSTEQQLVGPSSKPFASTTPALIELPTCVVCLERMDSSITGLITIVCQHTFHCPCLQKWGNSSCPVCRYTQKVQSSEFQSKCTVCCYDKDLWICLI 276 The following BLAST results are available for this feature:
BLAST of FC878116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878116 ID=FC878116; Name=FC878116; organism=Citrus clementina; type=EST; length=811bpback to top |