FC878116

Overview
NameFC878116
Unique NameFC878116
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length811
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878116_ssr213 microsatellite FC878116_ssr213:213..224. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4236 contig Ccv1_Contig4236:39..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878116 vs. ExPASy Swiss-Prot
Match: BRAP_MOUSE (BRCA1-associated protein OS=Mus musculus GN=Brap PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.496e-44
Identity = 99/257 (38.52%), Postives = 139/257 (54.09%), Query Frame = 1
Query:   70 DDEPFRQPLPEMISDDASAFDNAATQT--------FAFSSGNPRIEETRGVMHLFXXXXXXXXXXXXXXXXXXNRNLPVGRKPLVCVLGVPNHMTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFNSLEEEVCHVLFTVDVQFTGYTGSLEHVQPAPASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQ--QQPEKSICFVCQTSENLWMCVI 810
            + +P   P+    S + S   N A ++         +F SGNP +E   G+MHL+                       V R  ++CVL VP  MT  D  +F A F   I +M+I+R D   +QY VLI+F +Q  AD FY   NGRQFNS+E++VC +++   V+      S +         TE P C VCLER+D+  +GILTT+CNHSFH  C+ +W D++CPVCRYCQ  +  E++ CF C   ENLW+C+I
Sbjct:   90 EKKPSAAPVSAQRSREQSESVNTAPESPSKQLPDQISFFSGNPSVEIVHGIMHLYKTNKMTSLKED------------VRRSAMLCVLTVPATMTSHDLMKFVAPFNDVIEQMKIIR-DSTPNQYMVLIKFSAQADADSFYMACNGRQFNSIEDDVCQLVY---VERAEVLKSEDGASLPVMDLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTTCPVCRYCQTPEPVEENKCFECGVQENLWICLI 330          
BLAST of FC878116 vs. ExPASy Swiss-Prot
Match: BRAP_HUMAN (BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.551e-44
Identity = 100/251 (39.84%), Postives = 136/251 (54.18%), Query Frame = 1
Query:   64 AGDDEPFRQPLPEMISDDASAFDNAATQTFAFSSGNPRIEETRGVMHLFXXXXXXXXXXXXXXXXXXNRNLPVGRKPLVCVLGVPNHMTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFNSLEEEVCHVLFTVDVQFTGYTGSLEHVQPAPASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQ--QQPEKSICFVCQTSENLWMCVI 810
            A  D P +Q LP+ IS               F SGNP +E   G+MHL+                       V R  ++C+L VP  MT  D  +F A F   I +M+I+R D   +QY VLI+F +Q  AD FY   NGRQFNS+E++VC +++   V+      S +         TE P C VCLER+D+  +GILTT+CNHSFH  C+ +W D++CPVCRYCQ  +  E++ CF C   ENLW+C+I
Sbjct:  113 AAPDSPSKQ-LPDQIS---------------FFSGNPSVEIVHGIMHLYKTNKMTSLKED------------VRRSAMLCILTVPAAMTSHDLMKFVAPFNDVIEQMKIIR-DSTPNQYMVLIKFRAQADADSFYMTCNGRQFNSIEDDVCQLVY---VERAEVLKSEDGASLPVMDLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTTCPVCRYCQTPEPVEENKCFECGVQENLWICLI 331          
BLAST of FC878116 vs. ExPASy Swiss-Prot
Match: YQOE_CAEEL (Uncharacterized RING finger protein EEED8.16 OS=Caenorhabditis elegans GN=EEED8.16 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.954e-29
Identity = 73/222 (32.88%), Postives = 111/222 (50.00%), Query Frame = 1
Query:  154 AFSSGNPRIEETRGVMHLFXXXXXXXXXXXXXXXXXXNRNLPVGRKPLVCVLGVPNHMTYADFCQFCASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFNSLEEEVCHVLFTVDVQFTGYTGSLEHVQPAPASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQQPE---KSICFVCQTSENLWMCVI 810
            A+ SGNP  E+T G+MH +                   +   V +  ++C+  VP  +   +   F    +  I+ +++VR D   +QY ++I+F   + A  FY+ FN   FN LE   C + F   ++ T    S +       S TE P+C VCLER+D     +L  +CNHSFH  C+ +W D++CPVCRY  Q PE   +  C  C  S +LW+C+I
Sbjct:  125 AYYSGNPLTEKTEGIMHFYKYND--------------EKLTKVAQCRMLCMYAVPAQVEVREIISFMCISLPMIVSIKVVR-DPAPNQYMLIIKFKEHNDAVTFYEEFNNCPFNDLESYCCTLFFVDRIECTT---SNDLFSSDDTSLTELPTCAVCLERMDDS---VLAILCNHSFHARCLEQWADNTCPVCRYV-QSPEVVAEQRCNDCGMSNDLWICLI 324          
BLAST of FC878116 vs. ExPASy Swiss-Prot
Match: ETP1_YEAST (RING finger protein ETP1 OS=Saccharomyces cerevisiae GN=ETP1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.740e-28
Identity = 64/206 (31.07%), Postives = 103/206 (50.00%), Query Frame = 1
Query:  283 GRKPLVCVLGVPNHMTYADFCQFCAS---FIQHILEMRIVRTD--GMDDQYSVLIRFDSQDSADKFYQHFNGRQFNSLEEEVCHVLFTVDVQFTG---------------YTGSLEHVQPAPASSTEQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRY----------CQQQPEKSICFVCQTSENLWMCVI 810
            G   ++C+L VP + T  D   F        + +   RI+R    GM   ++VLI+F +   A  F + FNG+ F+ ++ E CHV+   ++ F                  T      +       E P+CPVCLER+D +T+G++T  C H+FHC C++KW +S CPVCR+           +Q  + + C  C +++NLW+C+I
Sbjct:  110 GDDTMICILFVPTYFTVHDLLHFYIGDDIVNKQVSNFRILRNQQKGMGFNFTVLIKFRNALDAKNFKEEFNGKSFSRMDPETCHVISVKEIVFQKKLFQRPAANEDFPYLLTDPFTVKKKKELVKVELPTCPVCLERMDSETTGLVTIPCQHTFHCQCLNKWKNSRCPVCRHSSLRLSRESLLKQAGDSAHCATCGSTDNLWICLI 315          
BLAST of FC878116 vs. ExPASy Swiss-Prot
Match: EPT1_SCHPO (RING finger protein ETP1 homolog OS=Schizosaccharomyces pombe GN=SPAC16E8.13 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.740e-28
Identity = 79/242 (32.64%), Postives = 123/242 (50.83%), Query Frame = 1
Query:  160 SSGNPRIEET---RGVMHLFXXXXXXXXXXXXXXXXXXNRNLPVGRKPLVCVLGVPNHMTYADFCQF-----CASFIQHILEMRIVRTDGMDDQYSVLIRFDSQDSADKFYQHFNGRQFNSLEEEVCHVLFT--VDVQF---TGYTGSLEHVQPAPASST---------EQPSCPVCLERLDQDTSGILTTICNHSFHCSCISKWTDSSCPVCRYCQQQPE---KSICFVCQTSENLWMCVI 810
            SS  P +EET    GV+HL+                            ++ +L +P +M+ +D   F     C S IQHI   R+++T    ++   L++F  Q S  +FY  FNG+ F+ ++ E CHVL    V++++   +  + S E     P+S           E P+C VCLER+D   +G++T +C H+FHC C+ KW +SSCPVCRY Q+      +S C VC   ++LW+C+I
Sbjct:   53 SSKVPEVEETSLGHGVVHLYRVFPSESHEFDAPGL-------------ILAILAIPLYMSPSDVLGFLGEKHCKS-IQHI---RLLKTKD-PNRIMALLKFKDQASVIRFYTEFNGKAFSQIDPETCHVLHIDKVNIKYPMESSDSSSTEQQLVGPSSKPFASTTPALIELPTCVVCLERMDSSITGLITIVCQHTFHCPCLQKWGNSSCPVCRYTQKVQSSEFQSKCTVCCYDKDLWICLI 276          
The following BLAST results are available for this feature:
BLAST of FC878116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
BRAP_MOUSE1.496e-4438.52BRCA1-associated protein OS=Mus musculus GN=Brap P... [more]
BRAP_HUMAN2.551e-4439.84BRCA1-associated protein OS=Homo sapiens GN=BRAP P... [more]
YQOE_CAEEL3.954e-2932.88Uncharacterized RING finger protein EEED8.16 OS=Ca... [more]
ETP1_YEAST9.740e-2831.07RING finger protein ETP1 OS=Saccharomyces cerevisi... [more]
EPT1_SCHPO9.740e-2832.64RING finger protein ETP1 homolog OS=Schizosaccharo... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA64AE04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA64AE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878116 ID=FC878116; Name=FC878116; organism=Citrus clementina; type=EST; length=811bp
AATTTTGTTCAAATCAAACAAATTCAAAGAGCCATGTCATCCAGCTCGAG
CACAGCAGTTGTCGCGGGAGACGACGAACCATTCCGGCAGCCGCTGCCGG
AGATGATCTCTGACGACGCATCAGCTTTTGACAACGCAGCGACTCAGACC
TTCGCTTTCTCTTCCGGAAACCCTCGAATCGAAGAGACACGTGGCGTCAT
GCATCTCTTCTCCAGCAGCAGCAGCGACAATAGTAATGACGGCGTTGTTT
CCTCGCCCTCTCCCAATCGGAATCTCCCCGTTGGAAGGAAACCCCTCGTG
TGTGTGCTTGGGGTGCCGAATCACATGACATATGCAGATTTTTGTCAGTT
TTGTGCTTCGTTTATTCAACATATACTGGAGATGCGAATTGTTCGGACTG
ATGGGATGGACGATCAATATAGTGTTTTGATAAGATTTGACAGTCAAGAT
TCTGCAGACAAATTCTATCAGCATTTTAATGGTAGACAATTTAATTCTTT
GGAGGAAGAAGTTTGCCATGTGCTTTTCACGGTTGATGTACAGTTTACTG
GTTATACTGGTTCCCTTGAGCACGTGCAGCCTGCTCCTGCAAGCTCAACT
GAGCAGCCTTCATGTCCAGTTTGCCTTGAGAGATTGGACCAAGATACCAG
TGGAATTCTCACAACTATTTGCAATCATTCTTTCCATTGCTCTTGTATCT
CAAAATGGACAGATTCGTCTTGTCCAGTGTGCCGATACTGCCAGCAACAG
CCAGAAAAATCAATATGTTTTGTATGCCAAACTTCTGAGAACCTCTGGAT
GTGTGTTATAT
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