FC878137

Overview
NameFC878137
Unique NameFC878137
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length861
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878137_ssr505 microsatellite FC878137_ssr505:505..519. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11238 contig Ccv1_Contig11238:267..1127. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878137 vs. ExPASy Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.062e-47
Identity = 80/122 (65.57%), Postives = 102/122 (83.61%), Query Frame = 3
Query:   81 GENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANST 446
            G +   ++R+GPWT+EED +LI YI+ H +G WN LAK +GLKRTGKSCRLRWLNYL+PDV+RGN+TP+EQ+ I+ELH+KWGNRWSKIA+HLPGRTDNEIKN+WRTR+QK  +   +   S+
Sbjct:   13 GSSAEAEVRKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKYIKQSDVTTTSS 134          
BLAST of FC878137 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.279e-46
Identity = 82/118 (69.49%), Postives = 101/118 (85.59%), Query Frame = 3
Query:   99 QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTTF 452
            ++R+GPWT+EED +LI YI+ H EG WN LA+ +GLKRTGKSCRLRWLNYL+PDV+RGN+TP+EQ+ I+ELH+KWGNRWSKIA+ LPGRTDNEIKNYWRTR+QK        ++STTF
Sbjct:   12 EVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYWRTRIQKHMEQ-GDQSSSTTF 128          
BLAST of FC878137 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.477e-45
Identity = 78/108 (72.22%), Postives = 97/108 (89.81%), Query Frame = 3
Query:   99 QLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYW-RTRVQKQAR 419
            ++R+GPWT+EED +LI +IS H EG WN +A+ +GLKRTGKSCRLRWLNYL+PDV+RGN+TP+EQ+ I+ELH+KWGNRWSKIA+HLPGRTDNEIKNYW RTR+QK  +
Sbjct:   12 EVRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWNRTRIQKHIK 119          
BLAST of FC878137 vs. ExPASy Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 2.066e-39
Identity = 70/118 (59.32%), Postives = 93/118 (78.81%), Query Frame = 3
Query:   96 DQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTT 449
            ++ R+GPWT +ED LL+ ++    + RW+ +AK SGL RTGKSCRLRW+NYL P +KRG +TPQE+  +LELH+KWGNRWSKIA+ LPGRTDNEIKNYWRT ++K+A+  K   + T+
Sbjct:    6 EEYRKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKKRPMSPTS 123          
BLAST of FC878137 vs. ExPASy Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.699e-39
Identity = 70/115 (60.87%), Postives = 91/115 (79.13%), Query Frame = 3
Query:  105 RRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTT 449
            R+GPWT +ED LL+ ++    + RW+ +AK SGL RTGKSCRLRW+NYL P +KRG +TPQE+  +LELH+KWGNRWSKIA+ LPGRTDNEIKNYWRT ++K+A+  K   + T+
Sbjct:    8 RKGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKKRPVSPTS 122          
BLAST of FC878137 vs. ExPASy Swiss-Prot
Match: MYBA2_ORYSJ (Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.627e-37
Identity = 66/111 (59.46%), Postives = 88/111 (79.28%), Query Frame = 3
Query:   96 DQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLK 428
            +++R+GPWT +ED  L+  +    E RW+ +AK SGL RTGKSCRLRW+NYL P +KRG ++P E+  ILELH++WGNRWS+IA+ LPGRTDNEIKNYWRT ++K+A+  K
Sbjct:    6 EEIRKGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGRMSPHEERLILELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERK 116          
BLAST of FC878137 vs. ExPASy Swiss-Prot
Match: MYBA1_ORYSJ (Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.061e-35
Identity = 63/118 (53.39%), Postives = 92/118 (77.97%), Query Frame = 3
Query:   96 DQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTT 449
            +++R+GPWT +ED  L+  +    + RW+ +AK SGL RTGKSCRLRW+NYL P +K G ++P+E+  I+ELH++WGNRWS+IA+ LPGRTDNEIKNYWRT ++K+A+  + D + ++
Sbjct:    6 EEMRKGPWTEQEDLQLVCTVRLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKHGRMSPKEEHLIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERRGDMSPSS 123          
BLAST of FC878137 vs. ExPASy Swiss-Prot
Match: WER_ARATH (Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.364e-35
Identity = 61/111 (54.95%), Postives = 85/111 (76.58%), Query Frame = 3
Query:   81 GENDSDQLRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 413
            G+  +++ ++G WT+EED +L+ Y+  H +G WN +AK++GLKR GKSCRLRW+NYL P+VKRGN T QE+  I+ LH   GNRWS IA+ +PGRTDN++KNYW T + K+
Sbjct:    9 GDEGNNEYKKGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVKRGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 119          
BLAST of FC878137 vs. ExPASy Swiss-Prot
Match: MYB15_ANTMA (Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.033e-35
Identity = 65/114 (57.02%), Postives = 85/114 (74.56%), Query Frame = 3
Query:  102 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANS 443
            L+RGPWT EED  L  Y+ ++    W ++ K +GL R GKSCRLRW+NYL+PD+K+G LT  E+  I+ELH+  GNRWSKIA H+PGRTDNEIKNYW T ++K+ + L ID N+
Sbjct:   12 LKRGPWTEEEDQKLTSYVLKNGIQGWRVIPKLAGLSRCGKSCRLRWMNYLRPDLKKGPLTEMEENQIIELHAHLGNRWSKIALHIPGRTDNEIKNYWNTHIKKKLKLLGIDPNN 125          
BLAST of FC878137 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSJ (Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.879e-35
Identity = 59/106 (55.66%), Postives = 83/106 (78.30%), Query Frame = 3
Query:  102 LRRGPWTLEEDTLLIQYISRHSEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQAR 419
            L++GPWT  ED +L+ Y+ +H EG WN + K +GL R GKSCRLRW N+L+P++K+G  T +E+  I++LHSK GN+W+++A HLPGRTDNEIKNYW TR+++  R
Sbjct:   40 LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRCQR 145          
The following BLAST results are available for this feature:
BLAST of FC878137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MYB21_ARATH2.062e-4765.57Transcription factor MYB21 OS=Arabidopsis thaliana... [more]
MYB05_ANTMA2.279e-4669.49Myb-related protein 305 OS=Antirrhinum majus GN=MY... [more]
MYB40_ANTMA1.477e-4572.22Myb-related protein 340 OS=Antirrhinum majus GN=MY... [more]
MYB59_ARATH2.066e-3959.32Transcription factor MYB59 OS=Arabidopsis thaliana... [more]
MYB48_ARATH2.699e-3960.87Transcription factor MYB48 OS=Arabidopsis thaliana... [more]
MYBA2_ORYSJ5.627e-3759.46Myb-related protein MYBAS2 OS=Oryza sativa subsp. ... [more]
MYBA1_ORYSJ1.061e-3553.39Myb-related protein MYBAS1 OS=Oryza sativa subsp. ... [more]
WER_ARATH2.364e-3554.95Transcription factor WER OS=Arabidopsis thaliana G... [more]
MYB15_ANTMA4.033e-3557.02Myb-related protein 315 OS=Antirrhinum majus GN=MY... [more]
GAM1_ORYSJ6.879e-3555.66Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA76CA09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA76CA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878137 ID=FC878137; Name=FC878137; organism=Citrus clementina; type=EST; length=861bp
TAAGACTCGAAAAAGCAGTCTTTGTTAATGTTGGAACAAATATGTCTTCT
TTTAGTAAGAGCTCAACCTCATCTATTTATGGCGAAAATGATTCTGATCA
GCTGAGGAGAGGGCCGTGGACACTTGAAGAAGACACTCTACTCATTCAGT
ACATATCTCGGCACAGCGAAGGCCGATGGAATTTGCTAGCAAAACGTTCG
GGCTTGAAGAGAACTGGGAAAAGTTGCAGATTGAGATGGCTAAATTATCT
GAAACCTGATGTGAAGAGAGGCAATCTCACTCCACAAGAACAAATGTCAA
TTCTTGAACTCCATTCTAAGTGGGGTAATAGGTGGTCGAAGATTGCTCAG
CACTTACCAGGAAGGACTGACAATGAAATCAAGAACTATTGGAGAACTCG
TGTTCAGAAACAAGCACGGCATCTAAAGATAGACGCAAATAGCACGACAT
TTCAAGAGATTATTCGATGTTTTTGGATGCCAAGATTGCTTCAAAAGATG
GACACATCATCATCATCATCACCATCGGCTTTATCTCAGAATCCTACAAT
TAATTCTCAGCCGTTTGATCATGCTTTTCATCATCAGGGATCAGCATCGG
CACAAATAATATCCCATCAAGTTCCTTACGATCGGGGAGTGATTGATCAT
CAAGAATTGAATTCATCATCAGACTCGGAGCACGGCATTGGCACCAGCAC
TTCCTGCATTTCTTCATCCGAATCAATGAATTTTTCCCAAGTGTCTCAGT
TTTCGGAGTACCCAACCGGTGGCGACCATTTTCATGCTAGTAATAATGAT
AGCAGTGAGTACAACACTTTTGCAAAAGATTTCTGTCAATTTGACAGCAA
CTGCTATGACA
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