FC878152

Overview
NameFC878152
Unique NameFC878152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length777
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878152_ssr59 microsatellite FC878152_ssr59:59..70. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13755 contig Ccv1_Contig13755:649..1425. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878152 vs. ExPASy Swiss-Prot
Match: AFR_ARATH (F-box protein AFR OS=Arabidopsis thaliana GN=AFR PE=1 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 2.793e-53
Identity = 94/160 (58.75%), Postives = 121/160 (75.62%), Query Frame = -1
Query:  292 KLRMGLARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKVFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYEEQNGGISAEWKVMTAPRAFKDLAPSSCQVVY 771
            KL M LA+YDSAV+G +M VTEGW WPFMF P G VYD ++ TW  MS GMKEGWTG+S+V+  ++FVISEHGD PMK Y  DDDTWRYV G+K   E M RPFAV G + +++VV+SG+NVA GRV E QNG  S EW+++++P++    +P+SC V+Y
Sbjct:  212 KLPMVLAKYDSAVIGKEMCVTEGWAWPFMFPPMGQVYDSDEGTWREMSGGMKEGWTGVSVVIRDRLFVISEHGDFPMKVYCSDDDTWRYVSGEKLQGEKMRRPFAVTGADDRVFVVASGINVAEGRVSEGQNGDFSVEWRMVSSPKSSIQFSPASCHVLY 371          
BLAST of FC878152 vs. ExPASy Swiss-Prot
Match: FBK17_ARATH (F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana GN=At1g30090 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.627e-35
Identity = 66/156 (42.31%), Postives = 102/156 (65.38%), Query Frame = -1
Query:  289 LARYDSAVMGSKMYVTEGWTWPFMFSPRGGVYDINKDTWNLMSDGMKEGWTGISIVLEGKVFVISEHGDCPMKQYNPDDDTWRYVGGDKFPCEVMHRPFAVNGVEGKIYVVSSGLNVAIGRVYEEQNGGISAEWKVMTAPRAFKDLAPSSCQVVYA 756
            +A YD+AV+  K+ VTEGW WPF  SPRG VYD   D W  MS G++EGWTG S+V+  ++F++SE     MK Y+P  D+W  + G + P E + RPFAVN    ++YVV   L++A+G +++ +N   +  W+V+ +P  + D+ PS+ Q+++A
Sbjct:  245 MASYDTAVLNGKLLVTEGWLWPFFVSPRGQVYDPRTDQWETMSMGLREGWTGTSVVIYDRLFIVSELERMKMKVYDPVTDSWETINGPELP-EQICRPFAVNCYGNRVYVVGRNLHLAVGNIWQSEN-KFAVRWEVVESPERYADITPSNSQILFA 398          
The following BLAST results are available for this feature:
BLAST of FC878152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AFR_ARATH2.793e-5358.75F-box protein AFR OS=Arabidopsis thaliana GN=AFR P... [more]
FBK17_ARATH2.627e-3542.31F-box/kelch-repeat protein At1g30090 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA64AE10FM1 IVIA1 Citrus clementina cDNA clone IC0AAA64AE10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878152 ID=FC878152; Name=FC878152; organism=Citrus clementina; type=EST; length=777bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTAATAGTAATGATTGATT
AAAACTCCCAAACAAACAAAATAGGAAGTAGGAACACACATTCTACCTAC
ACAGCTGTGGCTGTCGCTTACAGATACAAAATCAAAAAGCAGGCAAACAC
TTTATGAAGTAAGCAGCCTAATAAAAACAAAATCATGTCAAGGTTAGGCC
GAAATTAACAAATAAACTACAACCTGGCCTTATGATGAATGATTGGCGCA
GCATTATTGGCTCAAAAACAAACACTTCAATTAGTTTAAGCGTAAACCAC
TTGGCAACTGGAGGGTGCTAAGTCCTTGAACGCCCTAGGGGCAGTCATAA
CTTTCCACTCCGCTGAAATTCCCCCATTTTGTTCCTCATATACCCTTCCG
ATTGCCACGTTTAACCCACTTGACACCACATAAATTTTCCCTTCCACTCC
ATTCACTGCAAACGGCCTATGCATAACTTCACATGGGAATTTGTCCCCAC
CCACATACCGCCACGTGTCGTCATCAGGGTTGTACTGCTTCATTGGACAG
TCACCGTGCTCTGATATCACGAACACCTTGCCTTCAAGCACGATACTGAT
CCCAGTCCATCCTTCCTTCATCCCATCGCTCATCAAATTCCACGTGTCCT
TGTTGATGTCGTAGACCCCACCCCTTGGGGAAAACATAAAGGGCCACGTC
CATCCCTCAGTCACATACATCTTGCTCCCCATCACAGCTGAGTCGTACCT
AGCCAACCCCATTCGCAACTTGGCAGC
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