FC878161

Overview
NameFC878161
Unique NameFC878161
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length875
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13571 contig Ccv1_Contig13571:163..1037. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HAT22_ARATH (Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 6.567e-65
Identity = 151/275 (54.91%), Postives = 173/275 (62.91%), Query Frame = 3
Query:   87 MGFDDGCNTGLVLGLGFASAIETTPTNKANNI----NIVNHQQLQLPKGTCFEPSLSLGLPGEIYPEAATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXX------RASDE--DEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMHMPAATLTMCLSCERIGG 875
            MG DD CNTGLVLGLG    +  TP N  + I    + V+H+ ++L      +PSL+L L GE                      Y+    AG  +   + RQ S HS +S SFSSGRV KRER++                   R SD+  DE+GV+ARKKLRLTK+QSALLE++FK HSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRL              P YMHMPAATLTMC SCER+GG
Sbjct:    1 MGLDDSCNTGLVLGLG----LSPTPNNYNHAIKKSSSTVDHRFIRL------DPSLTLSLSGE---------------------SYKIKTGAGAGDQ--ICRQTSSHSGIS-SFSSGRV-KREREISGGDGEEEAEETTERVVCSRVSDDHDDEEGVSARKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLKALKLSQPFYMHMPAATLTMCPSCERLGG 240          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HAT9_ARATH (Homeobox-leucine zipper protein HAT9 OS=Arabidopsis thaliana GN=HAT9 PE=2 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 1.911e-64
Identity = 151/265 (56.98%), Postives = 162/265 (61.13%), Query Frame = 3
Query:   87 MGFDDGCNTGLVLGLGFASAIETTPTNKANNINIVNHQQLQLPKGTCFEPSLSLGLPGEIYPEAATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXXRASD--EDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMHMPAATLTMCLSCERIGG 875
            MGFDD CNTGLVLGLG        P+   NN N    Q          EPSL+L L G+               S+ V  G ++           L RQ S HS VS SFSSGRVVKRERD                SD  EDE+G++ARKKLRLTK+QSALLEESFK HSTLNPKQKQ LARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETL DEN RL              P YMHMPA+TLT C SCERIGG
Sbjct:    1 MGFDDTCNTGLVLGLG--------PSPIPNNYNSTIRQSSVYK----LEPSLTLCLSGD--------------PSVTVVTGADQ-----------LCRQTSSHSGVS-SFSSGRVVKRERDGGEESPEEEEMTERVISDYHEDEEGISARKKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLADENIRLQKEIQELKTLKLTQPFYMHMPASTLTKCPSCERIGG 227          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSJ (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica GN=HOX27 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.868e-49
Identity = 123/273 (45.05%), Postives = 150/273 (54.95%), Query Frame = 3
Query:   99 DGCNTGLVLGLGF---ASAIETTPTNKANNINIVNHQQLQLPKGTCFEPSLSLGLPGEI--YPEAATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSG-----------RVVKRERDLXXXXXXXXXXXXXRASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMHMPAATLTMCLSCERI 869
            DG    LVLGLG    A         +    ++V   +         EPS+ L L   +  +  + T  ++  +   DVN+    +A A   E       A+P  + S + S G           R                     RASD+DE G +ARKKLRL+KEQSA LEESFK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE+LK+CCETLT+ENRRLH             P YMH+PA TL+MC SCER+
Sbjct:   15 DGGRLELVLGLGVGVGAGVRRGEEEERGRREDVVGAGRWAAMAAASPEPSVRLSLVSSLGLHWPSETGRSEAAARGFDVNRAPSVAAGAPGMEDDEEGPGAAPALSSSPNDSGGSFPLDLSGQGLRGHAEAAAQGGGGGGGGERSSSRASDDDE-GASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELRALKTARPFYMHLPATTLSMCPSCERV 286          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSI (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. indica GN=HOX27 PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 3.868e-49
Identity = 123/273 (45.05%), Postives = 150/273 (54.95%), Query Frame = 3
Query:   99 DGCNTGLVLGLGF---ASAIETTPTNKANNINIVNHQQLQLPKGTCFEPSLSLGLPGEI--YPEAATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSG-----------RVVKRERDLXXXXXXXXXXXXXRASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMHMPAATLTMCLSCERI 869
            DG    LVLGLG    A         +    ++V   +         EPS+ L L   +  +  + T  ++  +   DVN+    +A A   E       A+P  + S + S G           R                     RASD+DE G +ARKKLRL+KEQSA LEESFK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE+LK+CCETLT+ENRRLH             P YMH+PA TL+MC SCER+
Sbjct:   15 DGGRLELVLGLGVGVGAGVRRGEEEERGRREDVVGAGRWAAMAAASPEPSVRLSLVSSLGLHWPSETGRSEAAARGFDVNRAPSVAAGAPGMEDDEEGPGAAPALSSSPNDSGGSFPLDLSGHGLRGHAEAAAQGGGGGGGGERSSSRASDDDE-GASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELRALKTARPFYMHLPATTLSMCPSCERV 286          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSJ (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.274e-48
Identity = 95/126 (75.40%), Postives = 105/126 (83.33%), Query Frame = 3
Query:  492 RASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMHMPAATLTMCLSCERI 869
            RASDED DG +ARKKLRL+KEQSA LEESFK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE+LK+CCETLT+ENRRL              P YMH+PA TL+MC SCER+
Sbjct:  165 RASDED-DGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMHLPATTLSMCPSCERV 289          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSI (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.274e-48
Identity = 95/126 (75.40%), Postives = 105/126 (83.33%), Query Frame = 3
Query:  492 RASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMHMPAATLTMCLSCERI 869
            RASDED DG +ARKKLRL+KEQSA LEESFK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE+LK+CCETLT+ENRRL              P YMH+PA TL+MC SCER+
Sbjct:   78 RASDED-DGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMHLPATTLSMCPSCERV 202          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSJ (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. japonica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.227e-46
Identity = 121/278 (43.53%), Postives = 143/278 (51.44%), Query Frame = 3
Query:   96 DDGCNTGLVLGLGFASAIETTPTNKANNINIVNHQQLQLPKGTC--FEPSLSLGLPGEIYPEAATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXXRASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLH----------------XXXXXXXXXXXXXPLYMHMPAATLTMCLSCERIGG 875
            D G   GL LG G     +    ++          +   P   C   EPSL+L LP +    AA   T   S                          A   S++S   ++   VKRER               R  D+D+DG + RKKLRLTKEQSALLE+ F++HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLK+CCETLT+ENRRL                              P YM +PAATLT+C SCER+GG
Sbjct:   11 DAGLALGLSLGGGGGGTTDAAAAHRGGC-------RRPSPSSQCPPLEPSLTLSLPDDAAAGAAATATATASGG---------------------GGPAHSVSSLSVGAAAAAAVKRERAEEADGERVSSTAAGR--DDDDDG-STRKKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELRALKFAPPPPSSAAHQPSPAPPAPFYMQLPAATLTICPSCERVGG 257          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSI (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. indica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 5.227e-46
Identity = 121/278 (43.53%), Postives = 143/278 (51.44%), Query Frame = 3
Query:   96 DDGCNTGLVLGLGFASAIETTPTNKANNINIVNHQQLQLPKGTC--FEPSLSLGLPGEIYPEAATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXXRASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLH----------------XXXXXXXXXXXXXPLYMHMPAATLTMCLSCERIGG 875
            D G   GL LG G     +    ++          +   P   C   EPSL+L LP +    AA   T   S                          A   S++S   ++   VKRER               R  D+D+DG + RKKLRLTKEQSALLE+ F++HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLK+CCETLT+ENRRL                              P YM +PAATLT+C SCER+GG
Sbjct:   11 DAGLALGLSLGGGGGGTTDAAAAHRGGC-------RRPSPSSQCPPLEPSLTLSLPDDAAAGAAATATATASGG---------------------GGPAHSVSSLSVGAAAAAAVKRERAEEADGERVSSTAAGR--DDDDDG-STRKKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELRALKFAPPPPSSAAHQPSPAPPAPFYMQLPAATLTICPSCERVGG 257          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HAT4_ARATH (Homeobox-leucine zipper protein HAT4 OS=Arabidopsis thaliana GN=HAT4 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.165e-45
Identity = 114/253 (45.06%), Postives = 149/253 (58.89%), Query Frame = 3
Query:  114 GLVLGLGFASAIETTPTNKANNINIVNHQQLQLPKGTCFEPSLSLGLPGEIYPEAATATTKKNSNSIDVNKGYEESAAAGVAEYQILNRQASPHSAVSNSFSSGRVVKRERDLXXXXXXXXXXXXXRASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMHM-PAATLTMCLSCERI 869
            GL LGL F        +N + ++   +     L + + +  S +  +P     +++   T+     IDVN+    +A  G  +  +    +SP+S VS+S  +G+  +RE D              R   +DEDG N+RKKLRL+K+QSA+LEE+FK HSTLNPKQKQALA+QL LR RQVEVWFQNRRARTKLKQTEVDCEFL++CCE LT+ENRRL                YMHM P  TLTMC SCE +
Sbjct:    9 GLSLGLNFPKKQINLKSNPSVSVT-PSSSSFGLFRRSSWNESFTSSVPNS---DSSQKETRTFIRGIDVNRP-PSTAEYGDEDAGV----SSPNSTVSSS--TGKRSEREEDTDPQGS--------RGISDDEDGDNSRKKLRLSKDQSAILEETFKDHSTLNPKQKQALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLRRCCENLTEENRRLQKEVTELRALKLSPQFYMHMSPPTTLTMCPSCEHV 242          
BLAST of FC878161 vs. ExPASy Swiss-Prot
Match: HAT14_ARATH (Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana GN=HAT14 PE=2 SV=3)

HSP 1 Score: 182.57 bits (462), Expect = 2.594e-45
Identity = 98/176 (55.68%), Postives = 116/176 (65.91%), Query Frame = 3
Query:  360 EYQILNRQASPHSAVSNSFSSGRVVK----RERDLXXXXXXXXXXXXXRASDEDEDGVNA--RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMHMPAATLTMCLSCERI 869
            E  + +   SP  +V++SF     +K      R               RAS+ED D  N   RKKLRL+K+QSA LE+SFK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE+LK+CCE+LT+ENRRL              P YM +PA TLTMC SCER+
Sbjct:  127 EEAVPSMSVSPPDSVTSSFQLDFGIKSYGYERRSNKRDIDDEVERSASRASNEDNDDENGSTRKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELRTLKTSTPFYMQLPATTLTMCPSCERV 302          
The following BLAST results are available for this feature:
BLAST of FC878161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
HAT22_ARATH6.567e-6554.91Homeobox-leucine zipper protein HAT22 OS=Arabidops... [more]
HAT9_ARATH1.911e-6456.98Homeobox-leucine zipper protein HAT9 OS=Arabidopsi... [more]
HOX27_ORYSJ3.868e-4945.05Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX27_ORYSI3.868e-4945.05Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX11_ORYSJ3.274e-4875.40Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX11_ORYSI3.274e-4875.40Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX19_ORYSJ5.227e-4643.53Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HOX19_ORYSI5.227e-4643.53Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HAT4_ARATH1.165e-4545.06Homeobox-leucine zipper protein HAT4 OS=Arabidopsi... [more]
HAT14_ARATH2.594e-4555.68Homeobox-leucine zipper protein HAT14 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA76CA12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA76CA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878161 ID=FC878161; Name=FC878161; organism=Citrus clementina; type=EST; length=875bp
ATTTCCTCTCTTTTTTTCTTTATTTTTCTCTCCTTCGCTTCAGAAGTCCC
GAGTGTTTCTCAAGACTCTCGAATCTCATATCTTAAATGGGTTTTGATGA
TGGGTGTAACACGGGCCTCGTGCTAGGGTTAGGTTTCGCATCAGCCATAG
AAACTACTCCAACAAATAAGGCGAACAATATAAATATTGTCAACCACCAG
CAGCTGCAGCTGCCTAAGGGTACATGTTTTGAGCCATCGCTTAGTCTGGG
CCTTCCTGGTGAGATTTACCCTGAGGCTGCTACTGCTACTACCAAAAAGA
ATAGTAATAGTATTGATGTGAACAAAGGTTATGAGGAATCCGCAGCAGCA
GGCGTCGCCGAATATCAAATACTAAATCGTCAGGCTTCTCCTCACAGTGC
TGTTTCTAATTCCTTCTCTAGCGGTAGAGTCGTCAAGAGGGAGAGAGACC
TTAGCAGTGAAGAGATAGAGGTTGAAAAAGTTATTTCCTCAAGAGCCAGT
GATGAAGATGAAGACGGTGTTAATGCCAGAAAGAAACTTAGGCTCACCAA
AGAACAATCTGCTCTTCTTGAGGAAAGCTTCAAACAGCATAGCACTCTCA
ATCCGAAGCAAAAGCAAGCTTTGGCAAGGCAACTAAACCTACGGCCAAGA
CAAGTTGAAGTATGGTTCCAGAATAGGAGAGCCAGGACAAAGCTCAAGCA
AACAGAAGTGGACTGTGAATTCTTGAAGAAATGCTGTGAAACACTAACTG
ATGAAAACAGAAGGCTGCATAANGAGCTACAAGAACTCAAAGCTCTGAAG
CTAGCTCAGCCTCTTTACATGCATATGCCGGCAGCTACCCTGACGATGTG
CCTTTCTTGTGAACGGATCGGCGGC
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