FC878186

Overview
NameFC878186
Unique NameFC878186
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length890
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7307 contig Ccv1_Contig7307:1..890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC878186 vs. ExPASy Swiss-Prot
Match: Y5175_ARATH (UPF0706 protein At5g01750 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.978e-12
Identity = 47/192 (24.48%), Postives = 90/192 (46.88%), Query Frame = 1 
Query:  202 VLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAHGKCLLTVRRKRPSLHHRWEGYSGERTDGQKPXXXXXXXXXXXXXXXXXEMY--ENPGE---EYRIEGNFGQRSCTIFNAMKESVADIRRKVDASTQVLLAKDVFLLSVKPGFDGAFAMGLVLVLDQINGDN 762
            V+V  +Y       + + +  +   +  F + +  G L+F+V    P     D+ VL+D  G  ++T+R K  S+H RW+ + G  TD Q+                  +++   N  E   ++R++G++ +RSC ++    +++     +      V L KD F ++V P  D AF   LV++LD +N ++
Sbjct:   26 VVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKE--PVFGLHDKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTD-QRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNRED 214
The following BLAST results are available for this feature:
BLAST of FC878186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5175_ARATH2.978e-1224.48UPF0706 protein At5g01750 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA79DF01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA79DF01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878186 ID=FC878186; Name=FC878186; organism=Citrus clementina; type=EST; length=890bp
TCGCTTTTCTCCTTTCTCTCTCTATAAAATCCTCCCAGTAATCAATCTTC
ATTTCAACGTCAGTACGTCACCGTTTACTGCAATCTTTACAACTTTGAAA
GTTCCAATCTTGGAGTGAAAAGCTCAGACTTTTCCGATCAGTTCGTTCAT
TCATTTGAAGATCAAAGATCACAAATAATAATGAAAGCTGATCAGGCTGC
GGTGCTGGTGGCCGACGAGTATATATACAAACAAGAAACCCATCTCACCG
TTTTTAAAACCTCTCTGTTTTTCCAAAACGACGGCTTCACTGTTTATAAC
TGCAGAGGTGAGTTGGTCTTCCGTGTTGACTCGTACGGCCCCGACACCCG
TGACAAGGATGAACACGTTCTTATGGACGCCCACGGCAAGTGCCTCCTCA
CTGTCAGACGAAAGAGGCCGAGCTTGCATCACCGGTGGGAGGGATATTCT
GGGGAGAGAACGGACGGTCAAAAGCCGATTTTTAGCGTGCGTAGATCCTC
GATAATCGGACGGTCCAGCGTGACTGTCGAGATGTACGAGAATCCAGGAG
AGGAGTACCGGATCGAGGGCAATTTCGGGCAAAGGAGTTGCACGATTTTC
AACGCGATGAAGGAATCGGTGGCTGATATTAGACGCAAAGTGGATGCATC
AACGCAGGTGCTGCTGGCCAAAGACGTCTTTTTACTCAGCGTGAAGCCTG
GGTTCGATGGAGCCTTTGCCATGGGTTTGGTATTGGTCCTTGATCAGATC
AACGGTGATAATTATGTTGAAAGTAACGGTGGTCGGGTGGACCCGGTCAC
GGAGGATTAGGTCGGCTGGCGGTCGCTTGGTGGGGAACTTTCTTCTTTGT
CTGGGGNTTGAGATATTTTGTTGTATTTTATAGTCTCACT
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