FC878194

Overview
NameFC878194
Unique NameFC878194
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length807
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13956 contig Ccv1_Contig13956:67..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878194 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 2.171e-96
Identity = 174/228 (76.32%), Postives = 185/228 (81.14%), Query Frame = 3
Query:  123 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGG 806
            MPIRNIA+G P EAT PDAL+AALAEFISTLIFV AG GSGMAFNKLT NGA TPS                     NISGGHVNPAVTFGAF+GGNI+LLRGILYWIAQLLGS VACL+LKF T G    AF LS+GVG  NA VFEIVMTFGLVYTVYATA+DPK GSLGTIAPIAIGFIVGANILAGGAF GASMNPAV+FGPA+VSW+W NHWVYW GPL+GGG
Sbjct:    1 MPIRNIAIGRPDEATRPDALKAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPSGLVAAAVAHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILKFATGGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYWAGPLVGGG 228          
BLAST of FC878194 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 4.236e-92
Identity = 170/228 (74.56%), Postives = 183/228 (80.26%), Query Frame = 3
Query:  123 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGG 806
            MPIRNIAVG  +E  HP AL+AALAEFISTLIFVFAG+GSGMAF+KLT  GA TP+                     NISGGHVNPAVTFGAFVGGNI+L RG+LYWIAQLLGSTVAC LL+F T G  T  F L+ GV  W A+V EIVMTFGLVYTVYATA+DPKKGSLGTIAPIAIGFIVGANIL GGAFDGASMNPAVSFGPALVSWSW++ WVYWVGPLIGGG
Sbjct:    1 MPIRNIAVGSHQEVYHPGALKAALAEFISTLIFVFAGQGSGMAFSKLTGGGATTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVACFLLRFSTGGLATGTFGLT-GVSVWEALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALVSWSWESQWVYWVGPLIGGG 227          
BLAST of FC878194 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 333.954 bits (855), Expect = 6.117e-91
Identity = 167/229 (72.93%), Postives = 182/229 (79.48%), Query Frame = 3
Query:  123 MPIRNIAVGHPREAT-HPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGG 806
            MP RNIA+G  +E   HP+ALRAALAEFISTLIFVFAG GSG+AFNK+T NGA TPS                     NISGGHVNPAVTFG  +GGNI+LLRGILYWIAQLLGS  AC LL F T G+   AF LS+GVG+ NA+VFEIVMTFGLVYTVYATA+DPK GSLGTIAPIAIGFIVGANILAGGAF GASMNPAV+FGPA+VSW+W NHWVYW GPLIGGG
Sbjct:    1 MPTRNIAIGGVQEEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLVAAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACFLLSFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGSLGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYWAGPLIGGG 229          
BLAST of FC878194 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 8.833e-90
Identity = 161/226 (71.24%), Postives = 178/226 (78.76%), Query Frame = 3
Query:  123 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIG 800
            MP+  IAVG P E +HPD  +AA+AEFIS LIFVFAG GSGMAF+KLT  G  TPS                     NISGGHVNPAVTFGAFVGGNISL++ ++YW+AQLLGS VACLLLK  T G    AF+LS+GVGAWNAVVFEIVMTFGLVYTVYATA+DPKKG LG IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPA+V+  WDNHWVYW+GP +G
Sbjct:    1 MPVSRIAVGAPGELSHPDTAKAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKIATGGAAVGAFSLSAGVGAWNAVVFEIVMTFGLVYTVYATAVDPKKGDLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTGVWDNHWVYWLGPFVG 226          
BLAST of FC878194 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 5.725e-89
Identity = 164/228 (71.93%), Postives = 177/228 (77.63%), Query Frame = 3
Query:  123 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGG 806
            MPI  IA+G  +E  HP AL+AA AEFISTLIFVFAG+GSGMAF+KLT  G  TP+                     NISGGHVNPAVTFGAFVGGNI+L RG+LYW+AQLLGSTVAC LL+F T GQ T  F L+ GV  W A+V EIVMTFGLVYTVYATA+DPKKGSLGTIAPIAIGFIVGANIL GGAFDGASMNPAVSFGPALVSW W   WVYWVGPLIGGG
Sbjct:    1 MPINRIALGSHQEVYHPGALKAAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVACFLLRFSTGGQATGTFGLT-GVSVWEALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALVSWEWGYQWVYWVGPLIGGG 227          
BLAST of FC878194 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 6.330e-88
Identity = 161/226 (71.24%), Postives = 178/226 (78.76%), Query Frame = 3
Query:  123 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIG 800
            MP+  IAVG P E +HPD  +AA+AEFISTLIFVFAG GSGMAF+KLT  GA TP+                     NISGGHVNPAVTFGAFVGGNISLL+ ++YW+AQLLGS VACLLLK  T G    AF+LS+GVGA NAVV E+VMTFGLVYTVYATA+DPKKG LG IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPA+V+  W+NHWVYWVGPL G
Sbjct:    1 MPVSRIAVGAPGELSHPDTAKAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATPAGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLKIATGGAALGAFSLSAGVGAMNAVVLEMVMTFGLVYTVYATAVDPKKGDLGVIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVTGVWENHWVYWVGPLAG 226          
BLAST of FC878194 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.410e-87
Identity = 165/228 (72.37%), Postives = 180/228 (78.95%), Query Frame = 3
Query:  123 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGG 806
            MPIRNIAVG P+EATHPD L+A LAEFIST IFVFAG GSG+A+NKLT++GA TP+                     NISGGHVNPAVTFGAFVGGNI+LLRGI+Y IAQLLGS VA  LL FVT   +  AF LS GVG   A+V EIVMTFGLVYTVYATA+DPKKG++G IAPIAIGFIVGANIL GGAF GASMNPAVSFGPA+VSWSW NHWVYW GPLIGGG
Sbjct:    1 MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVT-ASSVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWSNHWVYWAGPLIGGG 227          
BLAST of FC878194 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.842e-87
Identity = 158/226 (69.91%), Postives = 176/226 (77.88%), Query Frame = 3
Query:  123 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIG 800
            MPI  IA+G P EA+ PDA+RAA AEF S +IFVFAG+GSGMA+ KLT +G  TP+                     N+SGGHVNPAVTFGAF+GGNI+LLR ILYWIAQLLG+ VACLLLK  T G  T+AF+LS GV  WNAVVFEIVMTFGLVYTVYATA+DPKKG +G IAP+AIG IVGANIL GGAFDGASMNPAVSFGPA+VSW W NHWVYWVGP IG
Sbjct:    1 MPINRIAIGTPGEASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLKVSTGGMETAAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPLAIGLIVGANILVGGAFDGASMNPAVSFGPAVVSWIWTNHWVYWVGPFIG 226          
BLAST of FC878194 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 314.694 bits (805), Expect = 3.840e-85
Identity = 163/228 (71.49%), Postives = 178/228 (78.07%), Query Frame = 3
Query:  123 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGG 806
            MPIRNIAVG P+EATHPD L+A LAEFIST IFVFAG GSG+A+NKLT++GA TP+                     NISGGHVNPAV FGAFVGGNI+LLRGI+Y IAQLLGS V   LL FVT   +  AF LS GVG   A+V EIVMTFGLVYTVYATA+DPKKG++G IAPIAIGFIVGANIL GGAF GASMNPAVSFGPA+VSWSW NHWVYW GPLIGGG
Sbjct:    1 MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLVFVT-ASSVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWSNHWVYWAGPLIGGG 226          
BLAST of FC878194 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 3.728e-72
Identity = 132/228 (57.89%), Postives = 157/228 (68.86%), Query Frame = 3
Query:  132 RNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKL-----THNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIG 800
            R    G   EATHPD++RA LAEF+ST +FVFA EGS ++ +KL      H G NTP                      N+SGGHVNPAVTFGA VGG ++ +R I YWIAQLLG+ +ACLLL+  TNG     F L+SGVGA N +V EI++TFGLVY VY+T +DPK+GSLG IAP+AIG IVGANIL GG F GASMNPA +FGPALV W W +HW+YWVGP IG
Sbjct:    7 RAYGFGRADEATHPDSIRATLAEFLSTFVFVFAAEGSILSLDKLYWEHAAHAGTNTPGGLILVALAHAFALFAAVSAAINVSGGHVNPAVTFGALVGGRVTAIRAIYYWIAQLLGAILACLLLRLTTNGMRPVGFRLASGVGAVNGLVLEIILTFGLVYVVYSTLIDPKRGSLGIIAPLAIGLIVGANILVGGPFSGASMNPARAFGPALVGWRWHDHWIYWVGPFIG 234          
The following BLAST results are available for this feature:
BLAST of FC878194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
TIP11_ARATH2.171e-9676.32Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP11_ORYSJ4.236e-9274.56Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP12_ARATH6.117e-9172.93Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP12_ORYSJ8.833e-9071.24Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP11_MAIZE5.725e-8971.93Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP12_MAIZE6.330e-8871.24Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
TIP1_MEDTR1.410e-8772.37Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP13_ARATH1.842e-8769.91Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP1_MEDSA3.840e-8571.49Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
TIP31_ARATH3.728e-7257.89Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA33CF04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA33CF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878194 ID=FC878194; Name=FC878194; organism=Citrus clementina; type=EST; length=807bp
CAAAAACTACGCATTTCGAATATAAGTAGAAGCTCCTAGTTGAGAAGTGG
AGACCAGTACACTTACGTGAACCAGTAGTAATCACACCCCAAAGGTTCAA
TCTTCATCGTTTGATCTCCATCATGCCGATCAGAAACATTGCCGTTGGCC
ATCCCCGTGAGGCGACTCATCCAGATGCCCTAAGGGCAGCCCTAGCAGAG
TTCATCTCAACTCTAATATTTGTCTTTGCCGGTGAAGGCTCGGGCATGGC
CTTCAACAAGCTCACTCACAACGGCGCCAACACCCCCTCCGGCCTCGTCG
CCGCCTCTGTTGCTCACGCTTTCGCCCTTTTCGTTGCTGTCGCCGTTGGC
GCCAACATTTCCGGTGGCCACGTTAATCCTGCTGTCACCTTTGGCGCCTT
CGTTGGAGGTAACATCTCCCTTCTACGAGGCATCCTCTACTGGATCGCCC
AGCTTCTTGGATCCACCGTCGCATGCTTGCTTCTTAAGTTCGTTACCAAC
GGCCAGACCACATCTGCTTTTGCTCTCTCATCTGGAGTTGGTGCATGGAA
CGCAGTCGTTTTCGAGATCGTGATGACATTCGGACTAGTGTACACAGTGT
ATGCCACAGCCCTGGACCCAAAGAAGGGAAGCTTGGGGACAATTGCACCA
ATTGCAATTGGTTTCATTGTAGGAGCCAACATCTTGGCGGGCGGGGCGTT
TGATGGAGCTTCAATGAACCCAGCAGTGTCATTCGGGCCAGCTTTGGTAA
GCTGGAGCTGGGACAATCACTGGGTCTACTGGGTCGGGCCACTCATCGGT
GGTGGGC
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