FC878200

Overview
NameFC878200
Unique NameFC878200
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length978
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12236 contig Ccv1_Contig12236:133..1110. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878200 vs. ExPASy Swiss-Prot
Match: CHID1_MOUSE (Chitinase domain-containing protein 1 OS=Mus musculus GN=Chid1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.100e-18
Identity = 62/203 (30.54%), Postives = 96/203 (47.29%), Query Frame = 3
Query:  366 MHQRGLVKTDVNYQEILTEN-SKVSENASHRYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLI-LEGRHNADAGWLLELRK--GDALVLPRVVLEAFPXXXXXXXXXXXXXXXXXXTE----CKEMEYDGIVLESWSTWTA---YGILHDPELRNMALEFIKQLGNALHSVNSVRNRKAHLQLVYVISP 941
            +  RGLV TD+  ++++ E+ S  S  A  R +   VL Y+TPWNS GY++AK+F SKFT +SPVW  LK +G  +  + G H+ D GW+  ++K      ++PR++ E +                          K   +DG V+E WS   +    G++H           +  L  ALH        +A L ++ VI P
Sbjct:   45 VQDRGLVVTDIKAEDVVLEHRSYCSSRARERNFAGEVLGYVTPWNSHGYDVAKVFGSKFTQISPVWLQLKRRGREMFEITGLHDVDQGWMRAVKKHAKGVRIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVAQVAKNQHFDGFVVEVWSQLLSQKHVGLIH----------MLTHLAEALH--------QARLLVILVIPP 229          
BLAST of FC878200 vs. ExPASy Swiss-Prot
Match: CHID1_RAT (Chitinase domain-containing protein 1 OS=Rattus norvegicus GN=Chid1 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.436e-18
Identity = 62/203 (30.54%), Postives = 96/203 (47.29%), Query Frame = 3
Query:  366 MHQRGLVKTDVNYQEILTEN-SKVSENASHRYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLI-LEGRHNADAGWLLELRK--GDALVLPRVVLEAFPXXXXXXXXXXXXXXXXXXTE----CKEMEYDGIVLESWSTWTA---YGILHDPELRNMALEFIKQLGNALHSVNSVRNRKAHLQLVYVISP 941
            +  RGLV TD+  ++++ E+ S  S  A  R +   VL Y+TPWNS GY++AK+F SKFT +SPVW  LK +G  +  + G H+ D GW+  ++K      ++PR++ E +                          K   +DG V+E WS   +    G++H           +  L  ALH        +A L ++ VI P
Sbjct:   45 VQDRGLVVTDIKAEDVVLEHRSYCSARARERNFAGEVLGYVTPWNSHGYDVAKVFGSKFTQISPVWLQLKRRGREMFEITGLHDVDQGWMRAVKKHAKGVRIVPRLLFEDWTYDDFRSVLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWSQLLSQKHVGLIH----------MLTHLAEALH--------QARLLVILVIPP 229          
BLAST of FC878200 vs. ExPASy Swiss-Prot
Match: CHID1_XENTR (Chitinase domain-containing protein 1 OS=Xenopus tropicalis GN=chid1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.450e-18
Identity = 61/209 (29.19%), Postives = 98/209 (46.89%), Query Frame = 3
Query:  339 TRANRSATHMHQRGLVKTDVNYQEILTEN-SKVSENASHRYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLI-LEGRHNADAGWLLELRK--GDALVLPRVVLEAFP----XXXXXXXXXXXXXXXXXXTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKAHLQLVYVISP 941
            T+   S T +  RGLV TDV  ++I+ E+ S  ++    R+ +  VL Y+TPWN  GY++AK F +KFT +SPVW  +K +G     + G H+ D GW+ ++RK      ++PR++ + +                          K+  +DG V+E WS           + R   +  +  +G AL        R A L+ + VI P
Sbjct:   37 TKTRLSDTLVQTRGLVSTDVKAKDIVLEHRSYCAKKLKERHVSADVLGYVTPWNGHGYDIAKTFAAKFTLISPVWLQIKRKGKEAYHITGLHDVDQGWIKDIRKTSKSTQIVPRILFDGWSYQDFESVFSSEDEIEELAGAMVQTAKDERFDGFVVEVWSQLGG-------QKRQELVHLLTHIGEAL--------RLAKLRFILVIPP 230          
BLAST of FC878200 vs. ExPASy Swiss-Prot
Match: CHID1_XENLA (Chitinase domain-containing protein 1 OS=Xenopus laevis GN=chid1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.458e-18
Identity = 60/209 (28.71%), Postives = 97/209 (46.41%), Query Frame = 3
Query:  339 TRANRSATHMHQRGLVKTDVNYQEILTEN-SKVSENASHRYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLI-LEGRHNADAGWLLELRK--GDALVLPRVVLEAFP----XXXXXXXXXXXXXXXXXXTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKAHLQLVYVISP 941
            T+   S T +  RGLV TDV  ++I+ E+ S  ++    R+ +  VL Y+TPWN  GY++AK F +KFT +S VW  ++ +G     + G H+ D GW+ ++RK      ++PR++ + +                          K+  +DG V+E WS           + R   +  +  +G ALHS        A L  + VI P
Sbjct:   36 TKTRLSDTSVQSRGLVSTDVKAKDIVLEHRSYCAKKLKERHVSADVLGYVTPWNGHGYDIAKTFAAKFTLISSVWLQIRRKGREAYQVTGLHDVDQGWIKDIRKTSKSTQIVPRILFDGWSYQDFESVFNSEDEIEELAGAMVQTAKDEHFDGFVVEVWSQLGG-------QKRQELVHLLIHIGEALHS--------AKLHFILVIPP 229          
BLAST of FC878200 vs. ExPASy Swiss-Prot
Match: CHID1_PONAB (Chitinase domain-containing protein 1 OS=Pongo abelii GN=CHID1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.074e-17
Identity = 60/200 (30.00%), Postives = 94/200 (47.00%), Query Frame = 3
Query:  366 MHQRGLVKTDVNYQEILTEN-SKVSENASHRYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLI-LEGRHNADAGWLLELRK--GDALVLPRVVLEAFPXXXXXXXXXXXXXXXXXXTE----CKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKAHLQLVYVISP 941
            + +RGLV TD+  + ++ E+ S  S  A  R++   VL Y+TPWNS GY++ K+F SKFT +SPVW  LK +G  +  + G H+ D GW+  +RK      ++PR++ E +                          K   +DG V+E W+   +       + R   +  +  L  ALH        +A L  + VI P
Sbjct:   45 VQERGLVVTDLKAESVVLEHRSYCSAKARDRHFAGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLKRRGREMFEVTGLHDVDQGWMRAVRKHAKGLHIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWNQLLS-------QKRVGLIHMLTHLAEALH--------QARLLALLVIPP 229          
BLAST of FC878200 vs. ExPASy Swiss-Prot
Match: CHID1_DICDI (Chitinase domain-containing protein 1 OS=Dictyostelium discoideum GN=chid1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.709e-17
Identity = 55/179 (30.73%), Postives = 93/179 (51.96%), Query Frame = 3
Query:  372 QRGLVKTDVNYQEILTENSKVSENASHRYYTYP-VLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRKGD---ALVLPRVVLEA--FPXXXXXXXXXXXXXXXXXXTECKEMEYDGIVLESWSTWTAYGILH-DPELRNMALEFIKQLGNALHSV 887
            QRGLV+ +V+ ++I+   +K  +N   + +     L YITPWN KGY++A  +  KFTH+SPVW+ +K +   +++EG HN D  W+ ++++     + +LPR   E   +                   +  K+  YDG+V+E        GI+H + +LR+    F+  L   LHS+
Sbjct:   46 QRGLVRENVSAKQIINNYNKYFKNVDIKNFEQGNTLVYITPWNGKGYDVATKWAKKFTHISPVWHQVKFENNKVMIEGDHNIDKKWMEKVKENSDQKSKILPRFSFEGQQWGSKESFQKYIDPKLIDSLVSTVKKNNYDGLVIE--------GIVHINKQLRD---PFLISLSEKLHSI 213          
BLAST of FC878200 vs. ExPASy Swiss-Prot
Match: CHID1_HUMAN (Chitinase domain-containing protein 1 OS=Homo sapiens GN=CHID1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.537e-17
Identity = 60/200 (30.00%), Postives = 93/200 (46.50%), Query Frame = 3
Query:  366 MHQRGLVKTDVNYQEILTEN-SKVSENASHRYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLI-LEGRHNADAGWLLELRK--GDALVLPRVVLEAFPXXXXXXXXXXXXXXXXXXTE----CKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKAHLQLVYVISP 941
            +  RGLV TD+  + ++ E+ S  S  A  R++   VL Y+TPWNS GY++ K+F SKFT +SPVW  LK +G  +  + G H+ D GW+  +RK      ++PR++ E +                          K   +DG V+E W+   +       + R   +  +  L  ALH        +A L  + VI P
Sbjct:   45 VQDRGLVVTDLKAESVVLEHRSYCSAKARDRHFAGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLKRRGREMFEVTGLHDVDQGWMRAVRKHAKGLHIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWNQLLS-------QKRVGLIHMLTHLAEALH--------QARLLALLVIPP 229          
BLAST of FC878200 vs. ExPASy Swiss-Prot
Match: CHID1_BOVIN (Chitinase domain-containing protein 1 OS=Bos taurus GN=CHID1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.108e-16
Identity = 57/202 (28.22%), Postives = 92/202 (45.54%), Query Frame = 3
Query:  372 QRGLVKTDVNYQEILTEN-SKVSENASHRYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLI-LEGRHNADAGWLLELRK--GDALVLPRVVLEAFPXXXXXXXXXXXXXXXXXXTE----CKEMEYDGIVLESWSTWTAY---GILHDPELRNMALEFIKQLGNALHSVNSVRNRKAHLQLVYVISPP 944
            +RGLV TD+  ++++ E+ S  S  A  +++   VL YITPWN  GY++AK+F  KFTH++PVW  L+  G  +  + G  + D GWL  +RK      ++PR+  E +                          K   +DG+V+E W+        G++H           +  +  ALH             LV+++ PP
Sbjct:   47 ERGLVVTDLRAEDVVLEHRSYCSAKAHRKHFAGDVLGYITPWNRHGYDVAKIFGGKFTHVAPVWLQLRRHGREMFEVTGLDDVDQGWLRAVRKQAKGLRIVPRLRFEDWTYEDFDSVLDNEDEIEELSRTVVQVAKSQHFDGLVVEVWNQLLVQKHAGLIH----------LLTHMAEALHQAR---------LLVFLVIPP 229          
BLAST of FC878200 vs. ExPASy Swiss-Prot
Match: CHID1_DANRE (Chitinase domain-containing protein 1 OS=Danio rerio GN=chid1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.671e-16
Identity = 50/148 (33.78%), Postives = 75/148 (50.68%), Query Frame = 3
Query:  375 RGLVKTDVNYQEILTENSKVSENASH-RYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQG-TSLILEGRHNADAGWLLELRKGDA--LVLPRVVLEAFPXXXXXXXXXXXXXXXXXXTECKEME----YDGIVLESWS 794
            RGLV TD  +++I+ E  +      + R +   VL YITPWNS GY++AK+F  K T +SPVW  L+ +G  S  + G H+ D GW+  +RK +    +LPR++ + +                    E  E+     +DG  LE WS
Sbjct:   47 RGLVVTDPQWRDIVREEKRFCHQCINTRQFKGAVLGYITPWNSHGYDIAKLFGPKLTSVSPVWLQLRRRGPESFHITGLHDHDPGWVKAVRKANKKNKILPRLLFDGWSYQDYVSVLDSEDEMEELGREALEVAKAEGFDGYTLELWS 194          
The following BLAST results are available for this feature:
BLAST of FC878200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CHID1_MOUSE1.100e-1830.54Chitinase domain-containing protein 1 OS=Mus muscu... [more]
CHID1_RAT1.436e-1830.54Chitinase domain-containing protein 1 OS=Rattus no... [more]
CHID1_XENTR2.450e-1829.19Chitinase domain-containing protein 1 OS=Xenopus t... [more]
CHID1_XENLA5.458e-1828.71Chitinase domain-containing protein 1 OS=Xenopus l... [more]
CHID1_PONAB2.074e-1730.00Chitinase domain-containing protein 1 OS=Pongo abe... [more]
CHID1_DICDI2.709e-1730.73Chitinase domain-containing protein 1 OS=Dictyoste... [more]
CHID1_HUMAN3.537e-1730.00Chitinase domain-containing protein 1 OS=Homo sapi... [more]
CHID1_BOVIN5.108e-1628.22Chitinase domain-containing protein 1 OS=Bos tauru... [more]
CHID1_DANRE6.671e-1633.78Chitinase domain-containing protein 1 OS=Danio rer... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA6DF07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA6DF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878200 ID=FC878200; Name=FC878200; organism=Citrus clementina; type=EST; length=978bp
CAAAACCAAAAGAATGAAACGACATGTCGAAGTAATGACAAGTGAAAATC
AGACCCGTCGTAAGTATAATCTGTTTACAAACGCTATGAAGGAAGCTCTT
TTCCATCCAAATCCCTCTACCTTTTGAATTGGCCGTTAGACAAAACACAG
AAATGGCGAAAAGGAGAGACCGCCGAGTTGCACCGAGCCCGGGCCGTCCT
AAAAACCGAGTCGAATCGGCTGCTCGATTAGACCAGTTCAGCGACTCAGC
TTCCGATCGCAAGCTCATCACCATTTTCGTTATCTTCTTCATCGTGATTC
CCACCGTGTCCGTACTCTTATACTGTACCAAATACTCTACACGCGCCAAC
CGTTCGGCGACTCACATGCATCAGCGAGGACTCGTCAAAACTGATGTGAA
TTACCAAGAAATCCTCACGGAGAATTCAAAGGTTTCAGAGAATGCGTCCC
ATCGGTATTACACGTATCCCGTATTGGCCTATATTACTCCATGGAATTCT
AAGGGCTATGAACTGGCCAAGATGTTCAATTCTAAATTTACACACTTATC
ACCTGTTTGGTATGATCTCAAGAGCCAGGGAACTAGCTTAATCCTGGAAG
GAAGACATAATGCAGATGCAGGATGGCTTTTGGAGCTTAGAAAAGGAGAT
GCCCTGGTGTTACCCAGAGTGGTTCTGGAAGCATTTCCAAAGGAGCTTCT
CAGAAAGAAGAAACTGAGGGACAAAGCCATTGACCTTATATTAACAGAGT
GCAAGGAAATGGAATATGATGGTATAGTGCTAGAGTCTTGGTCCACGTGG
ACAGCTTATGGCATTTTGCATGATCCAGAATTGCGGAATATGGCACTAGA
GTTTATAAAACAACTTGGAAATGCGCTGCACAGTGTGAACTCAGTGAGAA
ACAGGAAAGCACATTTGCAGTTGGTCTATGTCATAAGTCCACCACATTTC
AGAGAAGTTCCACCACATGACTTTGGGG
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