FC878200
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878200 vs. ExPASy Swiss-Prot
Match: CHID1_MOUSE (Chitinase domain-containing protein 1 OS=Mus musculus GN=Chid1 PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.100e-18 Identity = 62/203 (30.54%), Postives = 96/203 (47.29%), Query Frame = 3 Query: 366 MHQRGLVKTDVNYQEILTEN-SKVSENASHRYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLI-LEGRHNADAGWLLELRK--GDALVLPRVVLEAFPXXXXXXXXXXXXXXXXXXTE----CKEMEYDGIVLESWSTWTA---YGILHDPELRNMALEFIKQLGNALHSVNSVRNRKAHLQLVYVISP 941 + RGLV TD+ ++++ E+ S S A R + VL Y+TPWNS GY++AK+F SKFT +SPVW LK +G + + G H+ D GW+ ++K ++PR++ E + K +DG V+E WS + G++H + L ALH +A L ++ VI P Sbjct: 45 VQDRGLVVTDIKAEDVVLEHRSYCSSRARERNFAGEVLGYVTPWNSHGYDVAKVFGSKFTQISPVWLQLKRRGREMFEITGLHDVDQGWMRAVKKHAKGVRIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVAQVAKNQHFDGFVVEVWSQLLSQKHVGLIH----------MLTHLAEALH--------QARLLVILVIPP 229
BLAST of FC878200 vs. ExPASy Swiss-Prot
Match: CHID1_RAT (Chitinase domain-containing protein 1 OS=Rattus norvegicus GN=Chid1 PE=2 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 1.436e-18 Identity = 62/203 (30.54%), Postives = 96/203 (47.29%), Query Frame = 3 Query: 366 MHQRGLVKTDVNYQEILTEN-SKVSENASHRYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLI-LEGRHNADAGWLLELRK--GDALVLPRVVLEAFPXXXXXXXXXXXXXXXXXXTE----CKEMEYDGIVLESWSTWTA---YGILHDPELRNMALEFIKQLGNALHSVNSVRNRKAHLQLVYVISP 941 + RGLV TD+ ++++ E+ S S A R + VL Y+TPWNS GY++AK+F SKFT +SPVW LK +G + + G H+ D GW+ ++K ++PR++ E + K +DG V+E WS + G++H + L ALH +A L ++ VI P Sbjct: 45 VQDRGLVVTDIKAEDVVLEHRSYCSARARERNFAGEVLGYVTPWNSHGYDVAKVFGSKFTQISPVWLQLKRRGREMFEITGLHDVDQGWMRAVKKHAKGVRIVPRLLFEDWTYDDFRSVLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWSQLLSQKHVGLIH----------MLTHLAEALH--------QARLLVILVIPP 229
BLAST of FC878200 vs. ExPASy Swiss-Prot
Match: CHID1_XENTR (Chitinase domain-containing protein 1 OS=Xenopus tropicalis GN=chid1 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 2.450e-18 Identity = 61/209 (29.19%), Postives = 98/209 (46.89%), Query Frame = 3 Query: 339 TRANRSATHMHQRGLVKTDVNYQEILTEN-SKVSENASHRYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLI-LEGRHNADAGWLLELRK--GDALVLPRVVLEAFP----XXXXXXXXXXXXXXXXXXTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKAHLQLVYVISP 941 T+ S T + RGLV TDV ++I+ E+ S ++ R+ + VL Y+TPWN GY++AK F +KFT +SPVW +K +G + G H+ D GW+ ++RK ++PR++ + + K+ +DG V+E WS + R + + +G AL R A L+ + VI P Sbjct: 37 TKTRLSDTLVQTRGLVSTDVKAKDIVLEHRSYCAKKLKERHVSADVLGYVTPWNGHGYDIAKTFAAKFTLISPVWLQIKRKGKEAYHITGLHDVDQGWIKDIRKTSKSTQIVPRILFDGWSYQDFESVFSSEDEIEELAGAMVQTAKDERFDGFVVEVWSQLGG-------QKRQELVHLLTHIGEAL--------RLAKLRFILVIPP 230
BLAST of FC878200 vs. ExPASy Swiss-Prot
Match: CHID1_XENLA (Chitinase domain-containing protein 1 OS=Xenopus laevis GN=chid1 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 5.458e-18 Identity = 60/209 (28.71%), Postives = 97/209 (46.41%), Query Frame = 3 Query: 339 TRANRSATHMHQRGLVKTDVNYQEILTEN-SKVSENASHRYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLI-LEGRHNADAGWLLELRK--GDALVLPRVVLEAFP----XXXXXXXXXXXXXXXXXXTECKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKAHLQLVYVISP 941 T+ S T + RGLV TDV ++I+ E+ S ++ R+ + VL Y+TPWN GY++AK F +KFT +S VW ++ +G + G H+ D GW+ ++RK ++PR++ + + K+ +DG V+E WS + R + + +G ALHS A L + VI P Sbjct: 36 TKTRLSDTSVQSRGLVSTDVKAKDIVLEHRSYCAKKLKERHVSADVLGYVTPWNGHGYDIAKTFAAKFTLISSVWLQIRRKGREAYQVTGLHDVDQGWIKDIRKTSKSTQIVPRILFDGWSYQDFESVFNSEDEIEELAGAMVQTAKDEHFDGFVVEVWSQLGG-------QKRQELVHLLIHIGEALHS--------AKLHFILVIPP 229
BLAST of FC878200 vs. ExPASy Swiss-Prot
Match: CHID1_PONAB (Chitinase domain-containing protein 1 OS=Pongo abelii GN=CHID1 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 2.074e-17 Identity = 60/200 (30.00%), Postives = 94/200 (47.00%), Query Frame = 3 Query: 366 MHQRGLVKTDVNYQEILTEN-SKVSENASHRYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLI-LEGRHNADAGWLLELRK--GDALVLPRVVLEAFPXXXXXXXXXXXXXXXXXXTE----CKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKAHLQLVYVISP 941 + +RGLV TD+ + ++ E+ S S A R++ VL Y+TPWNS GY++ K+F SKFT +SPVW LK +G + + G H+ D GW+ +RK ++PR++ E + K +DG V+E W+ + + R + + L ALH +A L + VI P Sbjct: 45 VQERGLVVTDLKAESVVLEHRSYCSAKARDRHFAGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLKRRGREMFEVTGLHDVDQGWMRAVRKHAKGLHIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWNQLLS-------QKRVGLIHMLTHLAEALH--------QARLLALLVIPP 229
BLAST of FC878200 vs. ExPASy Swiss-Prot
Match: CHID1_DICDI (Chitinase domain-containing protein 1 OS=Dictyostelium discoideum GN=chid1 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 2.709e-17 Identity = 55/179 (30.73%), Postives = 93/179 (51.96%), Query Frame = 3 Query: 372 QRGLVKTDVNYQEILTENSKVSENASHRYYTYP-VLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLILEGRHNADAGWLLELRKGD---ALVLPRVVLEA--FPXXXXXXXXXXXXXXXXXXTECKEMEYDGIVLESWSTWTAYGILH-DPELRNMALEFIKQLGNALHSV 887 QRGLV+ +V+ ++I+ +K +N + + L YITPWN KGY++A + KFTH+SPVW+ +K + +++EG HN D W+ ++++ + +LPR E + + K+ YDG+V+E GI+H + +LR+ F+ L LHS+ Sbjct: 46 QRGLVRENVSAKQIINNYNKYFKNVDIKNFEQGNTLVYITPWNGKGYDVATKWAKKFTHISPVWHQVKFENNKVMIEGDHNIDKKWMEKVKENSDQKSKILPRFSFEGQQWGSKESFQKYIDPKLIDSLVSTVKKNNYDGLVIE--------GIVHINKQLRD---PFLISLSEKLHSI 213
BLAST of FC878200 vs. ExPASy Swiss-Prot
Match: CHID1_HUMAN (Chitinase domain-containing protein 1 OS=Homo sapiens GN=CHID1 PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 3.537e-17 Identity = 60/200 (30.00%), Postives = 93/200 (46.50%), Query Frame = 3 Query: 366 MHQRGLVKTDVNYQEILTEN-SKVSENASHRYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLI-LEGRHNADAGWLLELRK--GDALVLPRVVLEAFPXXXXXXXXXXXXXXXXXXTE----CKEMEYDGIVLESWSTWTAYGILHDPELRNMALEFIKQLGNALHSVNSVRNRKAHLQLVYVISP 941 + RGLV TD+ + ++ E+ S S A R++ VL Y+TPWNS GY++ K+F SKFT +SPVW LK +G + + G H+ D GW+ +RK ++PR++ E + K +DG V+E W+ + + R + + L ALH +A L + VI P Sbjct: 45 VQDRGLVVTDLKAESVVLEHRSYCSAKARDRHFAGDVLGYVTPWNSHGYDVTKVFGSKFTQISPVWLQLKRRGREMFEVTGLHDVDQGWMRAVRKHAKGLHIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWNQLLS-------QKRVGLIHMLTHLAEALH--------QARLLALLVIPP 229
BLAST of FC878200 vs. ExPASy Swiss-Prot
Match: CHID1_BOVIN (Chitinase domain-containing protein 1 OS=Bos taurus GN=CHID1 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 5.108e-16 Identity = 57/202 (28.22%), Postives = 92/202 (45.54%), Query Frame = 3 Query: 372 QRGLVKTDVNYQEILTEN-SKVSENASHRYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQGTSLI-LEGRHNADAGWLLELRK--GDALVLPRVVLEAFPXXXXXXXXXXXXXXXXXXTE----CKEMEYDGIVLESWSTWTAY---GILHDPELRNMALEFIKQLGNALHSVNSVRNRKAHLQLVYVISPP 944 +RGLV TD+ ++++ E+ S S A +++ VL YITPWN GY++AK+F KFTH++PVW L+ G + + G + D GWL +RK ++PR+ E + K +DG+V+E W+ G++H + + ALH LV+++ PP Sbjct: 47 ERGLVVTDLRAEDVVLEHRSYCSAKAHRKHFAGDVLGYITPWNRHGYDVAKIFGGKFTHVAPVWLQLRRHGREMFEVTGLDDVDQGWLRAVRKQAKGLRIVPRLRFEDWTYEDFDSVLDNEDEIEELSRTVVQVAKSQHFDGLVVEVWNQLLVQKHAGLIH----------LLTHMAEALHQAR---------LLVFLVIPP 229
BLAST of FC878200 vs. ExPASy Swiss-Prot
Match: CHID1_DANRE (Chitinase domain-containing protein 1 OS=Danio rerio GN=chid1 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 6.671e-16 Identity = 50/148 (33.78%), Postives = 75/148 (50.68%), Query Frame = 3 Query: 375 RGLVKTDVNYQEILTENSKVSENASH-RYYTYPVLAYITPWNSKGYELAKMFNSKFTHLSPVWYDLKSQG-TSLILEGRHNADAGWLLELRKGDA--LVLPRVVLEAFPXXXXXXXXXXXXXXXXXXTECKEME----YDGIVLESWS 794 RGLV TD +++I+ E + + R + VL YITPWNS GY++AK+F K T +SPVW L+ +G S + G H+ D GW+ +RK + +LPR++ + + E E+ +DG LE WS Sbjct: 47 RGLVVTDPQWRDIVREEKRFCHQCINTRQFKGAVLGYITPWNSHGYDIAKLFGPKLTSVSPVWLQLRRRGPESFHITGLHDHDPGWVKAVRKANKKNKILPRLLFDGWSYQDYVSVLDSEDEMEELGREALEVAKAEGFDGYTLELWS 194 The following BLAST results are available for this feature:
BLAST of FC878200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878200 ID=FC878200; Name=FC878200; organism=Citrus clementina; type=EST; length=978bpback to top |