FC878209

Overview
NameFC878209
Unique NameFC878209
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length929
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878209 vs. ExPASy Swiss-Prot
Match: TAP46_ARATH (PP2A regulatory subunit TAP46 OS=Arabidopsis thaliana GN=TAP46 PE=1 SV=2)

HSP 1 Score: 260.766 bits (665), Expect = 8.189e-69
Identity = 147/282 (52.13%), Postives = 178/282 (63.12%), Query Frame = 3
Query:   84 MGEVSREELPLPSLFERGRKIHQIATESGCDPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTANLKYILVPYFLGELIEKIAQDDRLQILKASQAKLKEFISFCEIMXXXXXXXXXXXXQAKPTAFADQRARKIARFKRQRAAESKLQEIKERKERRGRSTRAAAPSAPXXXXXXXXXXXXXXXXXXAWLTTISLAVCKVCLRF*YDFPFASF*KLPLKIILSFSIXXXXXXXXXXXXXXXXXSAVKERQLKGGEEEFSEVVLDERSKKAESWHRDAA 929
            MG ++ EE+PL  LFE+ RKIH  A+ESG D D V+KGCE+ +KCEDM+GKL LFSSNETK+DIST NLKY+LVPY+L EL EKI Q+DR+QI+KAS AKLKEF SFCE M            +    A AD+RA KIARFKRQ+AAE+KL EIKERKERRGRST+A+A S P                  AWL++I+LA+CK                + L  +L                     SA+KERQLK GE  FS   LD+R+KKAE+WHRDAA
Sbjct:    1 MGGLAMEEMPLSVLFEQARKIHLAASESGVDQDVVKKGCEMFQKCEDMIGKLALFSSNETKEDISTNNLKYLLVPYYLAELTEKIIQEDRIQIVKASYAKLKEFFSFCEAMELVPDEELEASSRGGSGAPADRRALKIARFKRQKAAEAKLLEIKERKERRGRSTKASALSTPVESGEDDIPDDDSEEEREAWLSSINLAICKA---------------IDLLEMLK--------------REEEMLSAIKERQLKDGEGGFSRDALDDRTKKAETWHRDAA 253          
BLAST of FC878209 vs. ExPASy Swiss-Prot
Match: IGBP1_HUMAN (Immunoglobulin-binding protein 1 OS=Homo sapiens GN=IGBP1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.046e-12
Identity = 55/173 (31.79%), Postives = 90/173 (52.02%), Query Frame = 3
Query:  105 ELP-LPSLFERGRKIH---QIATE---SGCDPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTANLKYILVPYFLGEL-IEKIAQDDRLQILKASQAKLKEFISFC-----------EIMXXXXXXXXXXXXQAKPT--AFADQRARKIARFKRQRAAESKLQEIKERKE 560
            +LP LP LFE GR++    ++ATE   S    + V KG ++LEK  +M+ +L LFS NE  ++I++ +LKY+LVP F G L ++++    RL  L+ ++     +++ C           + M             A P+  A A QR  KI R+K+++  E +L  +K   E
Sbjct:    8 QLPRLPELFETGRQLLDEVEVATEPAGSRIVQEKVFKGLDLLEKAAEMLSQLDLFSRNEDLEEIASTDLKYLLVPAFQGALTMKQVNPSKRLDHLQRAREHFINYLTQCHCYHVAEFELPKTMNNSAENHTANSSMAYPSLVAMASQRQAKIQRYKQKKELEHRLSAMKSAVE 180          
BLAST of FC878209 vs. ExPASy Swiss-Prot
Match: YCJ5_SCHPO (Uncharacterized protein C63.05 OS=Schizosaccharomyces pombe GN=SPCC63.05 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11
Identity = 43/154 (27.92%), Postives = 76/154 (49.35%), Query Frame = 3
Query:  120 SLFERGRKIHQIATESGCDPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTANLKYILVPYFLGELIEKIAQDDRLQILKASQAKLKEFISFCEIMXXXXXXXXXXXXQAKPTAFADQRARKIARFKRQRAAESKLQEIKERKERRGRSTR 581
            SL E   +  ++   S  D     +  E  EKC  +V +L +FSSNE  D+I T+ L+Y+++ Y L + +E+  + DRL+ ++ ++   + F+S C+                KP   AD R  KIAR++ ++  E +L+ + +  E      R
Sbjct:    5 SLRELWEETEKLKDSSSTDEKTRSEIVEGYEKCLKLVLQLRIFSSNEEVDEIKTSELRYLMIDYELAKCVEQWTKGDRLKAVQYAKTHYETFLSICD------DYGLKPMQDEKPKTEADTRTLKIARYRMRQNLEKELKALSKDSETNEEQER 152          
BLAST of FC878209 vs. ExPASy Swiss-Prot
Match: IGBP1_RAT (Immunoglobulin-binding protein 1 OS=Rattus norvegicus GN=Igbp1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.567e-11
Identity = 56/178 (31.46%), Postives = 87/178 (48.88%), Query Frame = 3
Query:   96 SREEL---PLPSLFERGRKIHQ---IATE---SGCDPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTANLKYILVPYFLGEL-IEKIAQDDRLQILKASQAKLKEFISFC------EIMXXXXXXXXXXXXQAKPT-------AFADQRARKIARFKRQRAAESKLQEIKERKE 560
            S EEL    LP LFE  +K+ +   +ATE   S    D V KG E+LEK   M+ +L LFS NE  ++I++ +LKY++VP   G L ++++    RL  L+ ++     F++ C      E               A+ +       A A QR  KI R+K+++  E +L  +K   E
Sbjct:    4 SEEELLLPRLPELFETSKKLLEELEVATEPTGSRTIQDKVSKGLELLEKAAGMLSQLDLFSRNEDLEEIASIDLKYLMVPALQGALTMKQVNPSKRLDHLQRAREHFIHFLTQCHCYHVAEFQLPQTKNNSAENNTARSSMAYPNLVAMASQRQAKIERYKQKKEVEHRLSALKSAVE 181          
BLAST of FC878209 vs. ExPASy Swiss-Prot
Match: IGBP1_MOUSE (Immunoglobulin-binding protein 1 OS=Mus musculus GN=Igbp1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.965e-11
Identity = 52/169 (30.77%), Postives = 82/169 (48.52%), Query Frame = 3
Query:  114 LPSLFERGRKIHQ---IATE---SGCDPDAVRKGCEVLEKCEDMVGKLGLFSSNETKDDISTANLKYILVPYFLGEL-IEKIAQDDRLQILKASQAKLKEFISFC-----------EIMXXXXXXXXXXXXQAKP--TAFADQRARKIARFKRQRAAESKLQEIKERKE 560
            LP LFE  +K+ +   +ATE   S    D V KG E+LEK   M+ +L LFS NE  ++I++ +LKY++VP   G L ++++    RL  L+ ++     F++ C           +               A P   A A QR  KI R+K+++  E +L  +K   E
Sbjct:   13 LPELFETSKKLLEDVEVATEPTGSRTIQDKVSKGLELLEKAAGMLSQLDLFSRNEDLEEIASTDLKYLMVPALQGALTMKQVNPSKRLDHLQRAREHFVHFLTQCHCYHVAEFQLPQTKTNSAENNTASSSMAYPNLVAMASQRQAKIERYKQKKEVEHRLSALKSAVE 181          
The following BLAST results are available for this feature:
BLAST of FC878209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TAP46_ARATH8.189e-6952.13PP2A regulatory subunit TAP46 OS=Arabidopsis thali... [more]
IGBP1_HUMAN7.046e-1231.79Immunoglobulin-binding protein 1 OS=Homo sapiens G... [more]
YCJ5_SCHPO1.202e-1127.92Uncharacterized protein C63.05 OS=Schizosaccharomy... [more]
IGBP1_RAT4.567e-1131.46Immunoglobulin-binding protein 1 OS=Rattus norvegi... [more]
IGBP1_MOUSE5.965e-1130.77Immunoglobulin-binding protein 1 OS=Mus musculus G... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA55AC05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878209 ID=FC878209; Name=FC878209; organism=Citrus clementina; type=EST; length=929bp
TCTTCTTATTGCAAGTCTGCCCCTGAACGTTTCAAATATTTCCAAATTCA
CAACTGAAATCTAGGGTTTTGATACGGTGACCGATGGGTGAGGTATCAAG
GGAGGAGCTGCCACTGCCTTCGCTCTTTGAACGAGGACGAAAGATCCACC
AGATAGCTACGGAATCCGGTTGCGATCCGGATGCTGTGAGGAAAGGATGT
GAGGTTTTGGAGAAGTGCGAGGATATGGTCGGTAAGCTAGGGTTGTTCTC
ATCGAATGAGACCAAAGATGATATCAGCACCGCCAATCTCAAGTATATTC
TGGTGCCGTATTTTCTTGGCGAGCTGATTGAAAAAATTGCACAGGATGAT
AGGTTACAGATTCTTAAAGCTTCCCAGGCTAAATTGAAGGAGTTTATTTC
ATTTTGTGAGATAATGGAACTTGTACCAGAAGAGGAGTTGGAAGCCGTTG
CACAAGCCAAGCCAACTGCTTTTGCAGATCAAAGGGCCCGGAAGATTGCT
CGGTTCAAACGTCAAAGAGCAGCAGAATCAAAACTTCAGGAAATAAAGGA
GCGGAAGGAGAGGCGTGGGCGTTCGACTAGGGCAGCCGCTCCATCTGCTC
CTGTTGAGGCTGGAGAGGAAGATGTGTTGGATGATGATGGAGAAGAAGAA
AGGGAGGCTTGGCTTACCACCATCTCATTGGCTGTTTGCAAGGTTTGTCT
TAGGTTTTGATACGATTTTCCATTTGCAAGCTTCTGAAAATTGCCATTGA
AGATAATACTTTCATTTTCTATACTAAAGGCCCTTGATCTGCTAGAGATG
CTGAAGAAAGAGGAAGATATGCTTTCTGCTGTAAAAGAAAGACAATTAAA
GGGAGGTGAGGAGGAATTTTCTGAGGTTGTCCTTGATGAGCGCTCCAAAA
AAGCTGAATCTTGGCATCGTGATGCTGCT
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