FC878213

Overview
NameFC878213
Unique NameFC878213
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length952
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig26 contig Ccv1_Contig26:29..980. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878213 vs. ExPASy Swiss-Prot
Match: RUBB_ARATH (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490 PE=1 SV=3)

HSP 1 Score: 424.091 bits (1089), Expect = 5.797e-118
Identity = 228/287 (79.44%), Postives = 246/287 (85.71%), Query Frame = 3
Query:   96 MASTFTAMSSISSMIAPNGRMTDXXXXXXXXXXXXXXXXXXXXFGRRQSVALRRARTPK--IYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGNAFDRGYISPYFVTDSEKMAVEYENCKLLLVD 950
            MASTFTA SSI SM+APNG  +D                    FGRRQSV  R  R+    + AAK+LHFNKDG  +++LQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTVA+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG IAEGVKVVAAGANPVLITRGIEKT+KALV+ELK+MSKEVEDSELADVAAVSAGNN E+GNMIAEAMSKVGRKGVVTLEEGKSAEN LYVVEG  FDRGYISPYFVTDSEKM+VE++NCKLLLVD
Sbjct:    1 MASTFTATSSIGSMVAPNGHKSDKKLISKLSSSS---------FGRRQSVCPRPRRSSSAIVCAAKELHFNKDGTTIRRLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKEVEDSELADVAAVSAGNNDEIGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEFDNCKLLLVD 278          
BLAST of FC878213 vs. ExPASy Swiss-Prot
Match: RUBB_BRANA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 422.55 bits (1085), Expect = 1.687e-117
Identity = 226/287 (78.75%), Postives = 246/287 (85.71%), Query Frame = 3
Query:   96 MASTFTAMSSISSMIAPNGRMTDXXXXXXXXXXXXXXXXXXXXFGRRQSV--ALRRARTPKIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGNAFDRGYISPYFVTDSEKMAVEYENCKLLLVD 950
            MASTFTA SSI SM+APN   TD                    FGRRQ+V   LRR+    + AAK+LHFNKDG  ++KLQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTVA+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG IAEGVKVVAAGANPVLITRGIEKT+KALV+ELK+MSKEVEDSELADVAAVSAGNN E+G+MIAEAMS+VGRKGVVTLEEGKSAEN LYVVEG  FDRGY+SPYFVTDSEKM+VE++NCKLLLVD
Sbjct:    1 MASTFTATSSIGSMVAPNAHKTDKKLMNKLSSSS---------FGRRQNVFPKLRRSSPAVVCAAKELHFNKDGTTIRKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVAELKKMSKEVEDSELADVAAVSAGNNAEIGSMIAEAMSRVGRKGVVTLEEGKSAENALYVVEGMQFDRGYVSPYFVTDSEKMSVEFDNCKLLLVD 278          
BLAST of FC878213 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 407.912 bits (1047), Expect = 4.299e-113
Identity = 214/234 (91.45%), Postives = 224/234 (95.73%), Query Frame = 3
Query:  252 RRARTPKIYA-AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGNAFDRGYISPYFVTDSEKMAVEYENCKLLLVD 950
            R+ R  K+ A AK+LHFNKDG A+KKLQNGVNKLADLVGVTLGPKGRNVVLESKYG+PKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALV+ELK+MSKEVEDSELADVAAVSAGNN+EVGNMIAEA+SKVGRKGVVTLEEGKSAEN LYVVEG  FDRGYISPYFVTDSEKM VE+ENCKLLLVD
Sbjct:   39 RKNRNVKVSAMAKELHFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVAELKKMSKEVEDSELADVAAVSAGNNHEVGNMIAEALSKVGRKGVVTLEEGKSAENSLYVVEGMQFDRGYISPYFVTDSEKMTVEFENCKLLLVD 272          
BLAST of FC878213 vs. ExPASy Swiss-Prot
Match: RUBB_SECCE (RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.882e-84
Identity = 161/177 (90.96%), Postives = 170/177 (96.05%), Query Frame = 3
Query:  420 PKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGNAFDRGYISPYFVTDSEKMAVEYENCKLLLVD 950
            P+IVNDGVTVA+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKV+AAGANPV ITRGIEKT+KALV ELK+MSKEVEDSELADVAAVSAGNNYE+GNMIAEAMSKVGRKGVVTLEEG+S+EN LYVVEG  F+RGYISPYFVTDSEKM  EYENCKLLLVD
Sbjct:    1 PQIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVIAAGANPVQITRGIEKTAKALVLELKKMSKEVEDSELADVAAVSAGNNYEIGNMIAEAMSKVGRKGVVTLEEGRSSENNLYVVEGMQFERGYISPYFVTDSEKMTTEYENCKLLLVD 177          
BLAST of FC878213 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 1.071e-71
Identity = 135/219 (61.64%), Postives = 170/219 (77.63%), Query Frame = 3
Query:  294 HFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGNAFDRGYISPYFVTDSEKMAVEYENCKLLLVD 950
            H   D  + + L+ GVN LAD V +TLGPKGRNVVLE K+GAP+I+NDGVT+AKEVELEDP+EN GA+L+R+ A+KTND+AGDGTTT+ VLAQ LI EG+K VAAGANPV + +GI+KT  ALV E++  SK V    +A VA +SAGN+ EVG MIA+AM KVG+ GV+T+EE KS    + +VEG   DRGYISPYFVTD+E+M  E EN +LL+V+
Sbjct:    4 HVVFDEESRRALERGVNSLADAVRITLGPKGRNVVLEKKFGAPQIINDGVTIAKEVELEDPLENAGAQLMREVASKTNDVAGDGTTTATVLAQALIREGLKNVAAGANPVALRKGIDKTIDALVKEIEAKSKPVAGDAIAQVATISAGNDTEVGQMIAQAMDKVGKDGVITVEESKSLATEMEIVEGMQIDRGYISPYFVTDAERMVAEIENARLLIVN 222          
BLAST of FC878213 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 9.068e-71
Identity = 135/222 (60.81%), Postives = 175/222 (78.83%), Query Frame = 3
Query:  282 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGNAFDRGYISPYFVTDSEKMAVEYENCKLLL 944
            AK + F ++  A K L+ G+N+LAD + VT+GPKGRNVVLE K+GAP+IVNDGVT+AKE+EL DP+EN GA+L+R+ A+KTND+AGDGTTT+ +LAQ ++ EG+K ++AGANPV + RGIEKT+  LV ++   +K VE  + +A+VA +SAGN+ EVG MIA+AM  VGR GV+T+EE KS E  L VVEG  FDRGYISPYFVTDSE+M  EYEN  LL+
Sbjct:    2 AKRILFREE--ARKALEQGINQLADAIKVTIGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELADPLENTGAQLMREVASKTNDVAGDGTTTATILAQSMVREGLKNISAGANPVALRRGIEKTTAYLVEQIAAHAKPVEGRKTIAEVATISAGNDSEVGEMIAKAMDAVGRDGVITVEESKSLETELDVVEGMQFDRGYISPYFVTDSERMVAEYENAYLLI 221          
BLAST of FC878213 vs. ExPASy Swiss-Prot
Match: CH601_SYNJA (60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 1.184e-70
Identity = 134/222 (60.36%), Postives = 172/222 (77.48%), Query Frame = 3
Query:  282 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGNAFDRGYISPYFVTDSEKMAVEYENCKLLL 944
            AK + F ++  A K L+ G+N+LAD V VT+GPKGRNV+LE K+GAP+IVNDGVT+AKE+EL DP+EN GA+L+R+ A KTND+AGDGTTT+ +LAQ ++ EG+K ++AGANPV + RGIEKT+  LV ++   +K VE    +A+VA +SAGN+ EVG MIA AM  VGR GV+T+EE KS E  L VVEG  FDRGYISPYFVTD+E+M  EYEN  LL+
Sbjct:    2 AKQILFREE--ARKALEQGINQLADAVKVTIGPKGRNVLLEKKFGAPQIVNDGVTIAKEIELADPLENTGAQLMREVATKTNDVAGDGTTTATILAQSMVQEGLKNISAGANPVALRRGIEKTTAYLVEQIAAQAKPVEGRKNIAEVATISAGNDPEVGEMIARAMDAVGRDGVITVEESKSLETQLEVVEGMQFDRGYISPYFVTDTERMVAEYENAYLLI 221          
BLAST of FC878213 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 4.501e-70
Identity = 133/216 (61.57%), Postives = 172/216 (79.63%), Query Frame = 3
Query:  306 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGNAFDRGYISPYFVTDSEKMAVEYENCKLLLVD 950
            D  A + L+ GVN LAD V VTLGPKGRNVVLE K+GAP+IVNDGVT+AKE+ELEDP+EN GA+L+R+ A+KTND+AGDGTTT+ VLAQ LI EG++ VAAGANP+ + RG+EKT   LV E+  M+K VED++ +A+VA +S+GN+ E+G MIAEAM KVG++GV+T+EE KS    L VVEG  FD+GY+SPYFVTD+E+M  + +   +LL D
Sbjct:    8 DETARRALERGVNALADAVRVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDPLENTGAQLIREVASKTNDVAGDGTTTATVLAQALIREGLRNVAAGANPMSLKRGMEKTVAKLVQEIAAMAKPVEDNKTIAEVATISSGNDEEIGQMIAEAMDKVGKEGVITVEESKSLVTELDVVEGMQFDKGYVSPYFVTDTERMITDLDEPFILLTD 223          
BLAST of FC878213 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 4.501e-70
Identity = 128/215 (59.53%), Postives = 167/215 (77.67%), Query Frame = 3
Query:  306 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGNAFDRGYISPYFVTDSEKMAVEYENCKLLLVD 950
            D  + + L+ G+N LAD V +T+GPKGRNV+LE KYGAP+IVNDG+TVAK++ELEDP+EN GAKL+++ A+KT D+AGDGTTT+ VLAQ +I EG+K VAAGANPV + RGIEKT   LV E++ ++K VE   +A VA VSAG + EVG MI+EAM KV + GV+T+EE KS    L VVEG   DRGY+SPYFVTD E++ V++EN ++L+ D
Sbjct:    8 DDKSRRSLERGINTLADAVRITMGPKGRNVLLEKKYGAPQIVNDGITVAKDIELEDPLENTGAKLIQEVASKTKDIAGDGTTTATVLAQSMIKEGLKNVAAGANPVAVRRGIEKTVSLLVKEIQTVAKPVEGEAIAQVATVSAGGDAEVGRMISEAMDKVTKDGVITVEESKSLSTDLEVVEGMQIDRGYLSPYFVTDQERLVVDFENARILITD 222          
BLAST of FC878213 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 1.003e-69
Identity = 132/223 (59.19%), Postives = 176/223 (78.92%), Query Frame = 3
Query:  282 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGNAFDRGYISPYFVTDSEKMAVEYENCKLLLVD 950
            AK + F+++  + + L+ GVN LAD V +TLGPKGRNV+LE KYG P+IVNDG+TVAKE+ELEDP+EN GA+L+++ AAKT D+AGDGTTT+ VL Q LI EG+K VAAG+NPV + RGI+KT++ALV+E+ +++K VE S +A VA VSAGN+ EVG MIA+A+ KV + GV+T+EE KS    L VVEG   DRGYISPYF+T++E+  VE EN ++L+ D
Sbjct:    2 AKIISFDEE--SRRALERGVNALADAVKITLGPKGRNVLLEKKYGTPQIVNDGITVAKEIELEDPLENTGARLIQEVAAKTKDVAGDGTTTATVLVQALIKEGLKNVAAGSNPVSLKRGIDKTTEALVAEIAKVAKPVEGSAIAQVATVSAGNDEEVGAMIAQAVEKVTKDGVITVEESKSLTTELDVVEGMQIDRGYISPYFITNNERQTVELENVRILITD 222          
The following BLAST results are available for this feature:
BLAST of FC878213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBB_ARATH5.797e-11879.44RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_BRANA1.687e-11778.75RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_PEA4.299e-11391.45RuBisCO large subunit-binding protein subunit beta... [more]
RUBB_SECCE1.882e-8490.96RuBisCO large subunit-binding protein subunit beta... [more]
CH601_ACAM11.071e-7161.6460 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]
CH602_SYNJB9.068e-7160.8160 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 ... [more]
CH601_SYNJA1.184e-7060.3660 kDa chaperonin 1 OS=Synechococcus sp. (strain J... [more]
CH602_GLOVI4.501e-7061.5760 kDa chaperonin 2 OS=Gloeobacter violaceus GN=gr... [more]
CH601_TRIEI4.501e-7059.5360 kDa chaperonin 1 OS=Trichodesmium erythraeum (s... [more]
CH602_ANAVT1.003e-6959.1960 kDa chaperonin 2 OS=Anabaena variabilis (strain... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA79DF09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA79DF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878213 ID=FC878213; Name=FC878213; organism=Citrus clementina; type=EST; length=952bp
CCAACTCTCAGCTCCTACTCTGCCTGCAGCTCCCCTTATCTCTTTAAACC
CTAAAACTCTCGCACTTTCCGCCGTCTCACAGTTTAAACGAATAAATGGC
GTCGACTTTCACTGCCATGTCTTCCATTAGCTCCATGATTGCTCCTAATG
GACGAATGACTGATAAGAAGCTTGCATCTTCTTCGAACAAATTGTCATCA
CTTGCTTCCATTTCTTCAAGTTCATTCGGCAGGAGACAGAGTGTAGCTCT
ACGCAGGGCCCGCACACCTAAGATTTATGCGGCAAAGGACTTGCATTTCA
ACAAGGATGGATATGCCATGAAGAAACTTCAAAATGGTGTCAACAAGCTT
GCAGATCTAGTTGGAGTTACCCTTGGTCCCAAGGGCAGGAATGTTGTTCT
AGAGAGCAAGTACGGTGCCCCAAAAATTGTGAATGATGGTGTAACTGTGG
CCAAAGAAGTTGAGTTAGAGGACCCGGTTGAGAACATTGGTGCTAAATTA
GTGAGACAAGCAGCTGCCAAGACTAATGACTTGGCTGGTGATGGAACAAC
AACATCTGTTGTTCTTGCGCAAGGGCTTATAGCTGAAGGTGTTAAGGTCG
TGGCAGCTGGTGCAAATCCTGTTCTTATCACAAGAGGCATTGAGAAGACA
TCTAAGGCTCTTGTTTCTGAGCTCAAGCAGATGTCAAAAGAGGTTGAAGA
TAGTGAACTTGCCGATGTAGCAGCTGTTAGTGCAGGGAACAACTATGAAG
TTGGGAATATGATTGCAGAAGCCATGAGTAAAGTGGGACGTAAGGGTGTG
GTGACCCTTGAAGAGGGAAAAAGTGCTGAGAATATGCTCTATGTTGTTGA
GGGAAATGCATTTGATCGTGGTTATATTTCTCCCTACTTCGTCACTGATA
GTGAGAAAATGGCAGTTGAATATGAGAACTGCAAGTTGCTTCTTGTGGAT
AA
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