FC878213
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878213 vs. ExPASy Swiss-Prot
Match: RUBB_ARATH (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Arabidopsis thaliana GN=At1g55490 PE=1 SV=3) HSP 1 Score: 424.091 bits (1089), Expect = 5.797e-118 Identity = 228/287 (79.44%), Postives = 246/287 (85.71%), Query Frame = 3 Query: 96 MASTFTAMSSISSMIAPNGRMTDXXXXXXXXXXXXXXXXXXXXFGRRQSVALRRARTPK--IYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGNAFDRGYISPYFVTDSEKMAVEYENCKLLLVD 950 MASTFTA SSI SM+APNG +D FGRRQSV R R+ + AAK+LHFNKDG +++LQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTVA+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG IAEGVKVVAAGANPVLITRGIEKT+KALV+ELK+MSKEVEDSELADVAAVSAGNN E+GNMIAEAMSKVGRKGVVTLEEGKSAEN LYVVEG FDRGYISPYFVTDSEKM+VE++NCKLLLVD Sbjct: 1 MASTFTATSSIGSMVAPNGHKSDKKLISKLSSSS---------FGRRQSVCPRPRRSSSAIVCAAKELHFNKDGTTIRRLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTELKKMSKEVEDSELADVAAVSAGNNDEIGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEFDNCKLLLVD 278
BLAST of FC878213 vs. ExPASy Swiss-Prot
Match: RUBB_BRANA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Brassica napus PE=2 SV=1) HSP 1 Score: 422.55 bits (1085), Expect = 1.687e-117 Identity = 226/287 (78.75%), Postives = 246/287 (85.71%), Query Frame = 3 Query: 96 MASTFTAMSSISSMIAPNGRMTDXXXXXXXXXXXXXXXXXXXXFGRRQSV--ALRRARTPKIYAAKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGNAFDRGYISPYFVTDSEKMAVEYENCKLLLVD 950 MASTFTA SSI SM+APN TD FGRRQ+V LRR+ + AAK+LHFNKDG ++KLQ GVNKLADLVGVTLGPKGRNVVLESKYG+P+IVNDGVTVA+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQG IAEGVKVVAAGANPVLITRGIEKT+KALV+ELK+MSKEVEDSELADVAAVSAGNN E+G+MIAEAMS+VGRKGVVTLEEGKSAEN LYVVEG FDRGY+SPYFVTDSEKM+VE++NCKLLLVD Sbjct: 1 MASTFTATSSIGSMVAPNAHKTDKKLMNKLSSSS---------FGRRQNVFPKLRRSSPAVVCAAKELHFNKDGTTIRKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVAELKKMSKEVEDSELADVAAVSAGNNAEIGSMIAEAMSRVGRKGVVTLEEGKSAENALYVVEGMQFDRGYVSPYFVTDSEKMSVEFDNCKLLLVD 278
BLAST of FC878213 vs. ExPASy Swiss-Prot
Match: RUBB_PEA (RuBisCO large subunit-binding protein subunit beta, chloroplastic OS=Pisum sativum PE=1 SV=2) HSP 1 Score: 407.912 bits (1047), Expect = 4.299e-113 Identity = 214/234 (91.45%), Postives = 224/234 (95.73%), Query Frame = 3 Query: 252 RRARTPKIYA-AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGNAFDRGYISPYFVTDSEKMAVEYENCKLLLVD 950 R+ R K+ A AK+LHFNKDG A+KKLQNGVNKLADLVGVTLGPKGRNVVLESKYG+PKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALV+ELK+MSKEVEDSELADVAAVSAGNN+EVGNMIAEA+SKVGRKGVVTLEEGKSAEN LYVVEG FDRGYISPYFVTDSEKM VE+ENCKLLLVD Sbjct: 39 RKNRNVKVSAMAKELHFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVAELKKMSKEVEDSELADVAAVSAGNNHEVGNMIAEALSKVGRKGVVTLEEGKSAENSLYVVEGMQFDRGYISPYFVTDSEKMTVEFENCKLLLVD 272
BLAST of FC878213 vs. ExPASy Swiss-Prot
Match: RUBB_SECCE (RuBisCO large subunit-binding protein subunit beta, chloroplastic (Fragment) OS=Secale cereale GN=CPN60 PE=2 SV=1) HSP 1 Score: 312.768 bits (800), Expect = 1.882e-84 Identity = 161/177 (90.96%), Postives = 170/177 (96.05%), Query Frame = 3 Query: 420 PKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGNAFDRGYISPYFVTDSEKMAVEYENCKLLLVD 950 P+IVNDGVTVA+EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKV+AAGANPV ITRGIEKT+KALV ELK+MSKEVEDSELADVAAVSAGNNYE+GNMIAEAMSKVGRKGVVTLEEG+S+EN LYVVEG F+RGYISPYFVTDSEKM EYENCKLLLVD Sbjct: 1 PQIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVIAAGANPVQITRGIEKTAKALVLELKKMSKEVEDSELADVAAVSAGNNYEIGNMIAEAMSKVGRKGVVTLEEGRSSENNLYVVEGMQFERGYISPYFVTDSEKMTTEYENCKLLLVD 177
BLAST of FC878213 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1) HSP 1 Score: 270.396 bits (690), Expect = 1.071e-71 Identity = 135/219 (61.64%), Postives = 170/219 (77.63%), Query Frame = 3 Query: 294 HFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGNAFDRGYISPYFVTDSEKMAVEYENCKLLLVD 950 H D + + L+ GVN LAD V +TLGPKGRNVVLE K+GAP+I+NDGVT+AKEVELEDP+EN GA+L+R+ A+KTND+AGDGTTT+ VLAQ LI EG+K VAAGANPV + +GI+KT ALV E++ SK V +A VA +SAGN+ EVG MIA+AM KVG+ GV+T+EE KS + +VEG DRGYISPYFVTD+E+M E EN +LL+V+ Sbjct: 4 HVVFDEESRRALERGVNSLADAVRITLGPKGRNVVLEKKFGAPQIINDGVTIAKEVELEDPLENAGAQLMREVASKTNDVAGDGTTTATVLAQALIREGLKNVAAGANPVALRKGIDKTIDALVKEIEAKSKPVAGDAIAQVATISAGNDTEVGQMIAQAMDKVGKDGVITVEESKSLATEMEIVEGMQIDRGYISPYFVTDAERMVAEIENARLLIVN 222
BLAST of FC878213 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1) HSP 1 Score: 267.314 bits (682), Expect = 9.068e-71 Identity = 135/222 (60.81%), Postives = 175/222 (78.83%), Query Frame = 3 Query: 282 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGNAFDRGYISPYFVTDSEKMAVEYENCKLLL 944 AK + F ++ A K L+ G+N+LAD + VT+GPKGRNVVLE K+GAP+IVNDGVT+AKE+EL DP+EN GA+L+R+ A+KTND+AGDGTTT+ +LAQ ++ EG+K ++AGANPV + RGIEKT+ LV ++ +K VE + +A+VA +SAGN+ EVG MIA+AM VGR GV+T+EE KS E L VVEG FDRGYISPYFVTDSE+M EYEN LL+ Sbjct: 2 AKRILFREE--ARKALEQGINQLADAIKVTIGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELADPLENTGAQLMREVASKTNDVAGDGTTTATILAQSMVREGLKNISAGANPVALRRGIEKTTAYLVEQIAAHAKPVEGRKTIAEVATISAGNDSEVGEMIAKAMDAVGRDGVITVEESKSLETELDVVEGMQFDRGYISPYFVTDSERMVAEYENAYLLI 221
BLAST of FC878213 vs. ExPASy Swiss-Prot
Match: CH601_SYNJA (60 kDa chaperonin 1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=groL1 PE=3 SV=1) HSP 1 Score: 266.929 bits (681), Expect = 1.184e-70 Identity = 134/222 (60.36%), Postives = 172/222 (77.48%), Query Frame = 3 Query: 282 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGNAFDRGYISPYFVTDSEKMAVEYENCKLLL 944 AK + F ++ A K L+ G+N+LAD V VT+GPKGRNV+LE K+GAP+IVNDGVT+AKE+EL DP+EN GA+L+R+ A KTND+AGDGTTT+ +LAQ ++ EG+K ++AGANPV + RGIEKT+ LV ++ +K VE +A+VA +SAGN+ EVG MIA AM VGR GV+T+EE KS E L VVEG FDRGYISPYFVTD+E+M EYEN LL+ Sbjct: 2 AKQILFREE--ARKALEQGINQLADAVKVTIGPKGRNVLLEKKFGAPQIVNDGVTIAKEIELADPLENTGAQLMREVATKTNDVAGDGTTTATILAQSMVQEGLKNISAGANPVALRRGIEKTTAYLVEQIAAQAKPVEGRKNIAEVATISAGNDPEVGEMIARAMDAVGRDGVITVEESKSLETQLEVVEGMQFDRGYISPYFVTDTERMVAEYENAYLLI 221
BLAST of FC878213 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1) HSP 1 Score: 265.003 bits (676), Expect = 4.501e-70 Identity = 133/216 (61.57%), Postives = 172/216 (79.63%), Query Frame = 3 Query: 306 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSE-LADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGNAFDRGYISPYFVTDSEKMAVEYENCKLLLVD 950 D A + L+ GVN LAD V VTLGPKGRNVVLE K+GAP+IVNDGVT+AKE+ELEDP+EN GA+L+R+ A+KTND+AGDGTTT+ VLAQ LI EG++ VAAGANP+ + RG+EKT LV E+ M+K VED++ +A+VA +S+GN+ E+G MIAEAM KVG++GV+T+EE KS L VVEG FD+GY+SPYFVTD+E+M + + +LL D Sbjct: 8 DETARRALERGVNALADAVRVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDPLENTGAQLIREVASKTNDVAGDGTTTATVLAQALIREGLRNVAAGANPMSLKRGMEKTVAKLVQEIAAMAKPVEDNKTIAEVATISSGNDEEIGQMIAEAMDKVGKEGVITVEESKSLVTELDVVEGMQFDKGYVSPYFVTDTERMITDLDEPFILLTD 223
BLAST of FC878213 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1) HSP 1 Score: 265.003 bits (676), Expect = 4.501e-70 Identity = 128/215 (59.53%), Postives = 167/215 (77.67%), Query Frame = 3 Query: 306 DGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGNAFDRGYISPYFVTDSEKMAVEYENCKLLLVD 950 D + + L+ G+N LAD V +T+GPKGRNV+LE KYGAP+IVNDG+TVAK++ELEDP+EN GAKL+++ A+KT D+AGDGTTT+ VLAQ +I EG+K VAAGANPV + RGIEKT LV E++ ++K VE +A VA VSAG + EVG MI+EAM KV + GV+T+EE KS L VVEG DRGY+SPYFVTD E++ V++EN ++L+ D Sbjct: 8 DDKSRRSLERGINTLADAVRITMGPKGRNVLLEKKYGAPQIVNDGITVAKDIELEDPLENTGAKLIQEVASKTKDIAGDGTTTATVLAQSMIKEGLKNVAAGANPVAVRRGIEKTVSLLVKEIQTVAKPVEGEAIAQVATVSAGGDAEVGRMISEAMDKVTKDGVITVEESKSLSTDLEVVEGMQIDRGYLSPYFVTDQERLVVDFENARILITD 222
BLAST of FC878213 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2) HSP 1 Score: 263.848 bits (673), Expect = 1.003e-69 Identity = 132/223 (59.19%), Postives = 176/223 (78.92%), Query Frame = 3 Query: 282 AKDLHFNKDGYAMKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGAPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTSKALVSELKQMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENMLYVVEGNAFDRGYISPYFVTDSEKMAVEYENCKLLLVD 950 AK + F+++ + + L+ GVN LAD V +TLGPKGRNV+LE KYG P+IVNDG+TVAKE+ELEDP+EN GA+L+++ AAKT D+AGDGTTT+ VL Q LI EG+K VAAG+NPV + RGI+KT++ALV+E+ +++K VE S +A VA VSAGN+ EVG MIA+A+ KV + GV+T+EE KS L VVEG DRGYISPYF+T++E+ VE EN ++L+ D Sbjct: 2 AKIISFDEE--SRRALERGVNALADAVKITLGPKGRNVLLEKKYGTPQIVNDGITVAKEIELEDPLENTGARLIQEVAAKTKDVAGDGTTTATVLVQALIKEGLKNVAAGSNPVSLKRGIDKTTEALVAEIAKVAKPVEGSAIAQVATVSAGNDEEVGAMIAQAVEKVTKDGVITVEESKSLTTELDVVEGMQIDRGYISPYFITNNERQTVELENVRILITD 222 The following BLAST results are available for this feature:
BLAST of FC878213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878213 ID=FC878213; Name=FC878213; organism=Citrus clementina; type=EST; length=952bpback to top |