FC878228

Overview
NameFC878228
Unique NameFC878228
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length847
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10589 contig Ccv1_Contig10589:4..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878228 vs. ExPASy Swiss-Prot
Match: C94A1_VICSA (Cytochrome P450 94A1 OS=Vicia sativa GN=CYP94A1 PE=2 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 2.008e-55
Identity = 109/236 (46.19%), Postives = 151/236 (63.98%), Query Frame = 1
Query:  139 KHYPVVGSLPGYLRNRHRFLDWSTEILKHCPTGTAIFYRPGKI--HGVITANPANVEHILKTNFENYPKGQRFVTLLEDFLGRGIFNSDGELWKVQRKTASYEFNTKSLRNFVMDSVRFETLSRLVPILTKASRTGLALDLQDILERYAFDNICKVAFNFDPGCLGGDGTAGSEFMRAFEDAATLSSGRFRYAFRHMWSVKKFFDIGSERKLKNSIAIVHEFANNIIRSRMEEKTE 840
            K YP++GS   + +N HR + W ++I++  P+ T  F   G +    +IT NP+ V+HILK  F NY KG  F   L DFLG GIFN++G  WK QR+ AS+EFNTKS+RNFV   V  E  +RL+PILT +++T   LD QDIL+R+ FDNIC +AF +DP  L    T  S+F  A+EDA  +SS RFR     +W +KK+F+IGSE++LK ++  V  FA  ++R +  E  E
Sbjct:   49 KSYPLIGSYLSFRKNLHRRIQWLSDIVQISPSAT--FQLDGTLGKRQIITGNPSTVQHILKNQFSNYQKGTTFTNTLSDFLGTGIFNTNGPNWKFQRQVASHEFNTKSIRNFVEHIVDTELTNRLIPILTSSTQTNNILDFQDILQRFTFDNICNIAFGYDPEYL-TPSTNRSKFAEAYEDATEISSKRFRLPLPIIWKIKKYFNIGSEKRLKEAVTEVRSFAKKLVREKKRELEE 281          
BLAST of FC878228 vs. ExPASy Swiss-Prot
Match: C94A2_VICSA (Cytochrome P450 94A2 OS=Vicia sativa GN=CYP94A2 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.686e-51
Identity = 105/234 (44.87%), Postives = 145/234 (61.97%), Query Frame = 1
Query:  139 KHYPVVGSLPGYLRNRHRFLDWSTEILKHCPTGTAIFYRPGKIHGVITANPANVEHILKTNFENYPKGQRFVTLLEDFLGRGIFNSDGELWKVQRKTASYEFNTKSLRNFVMDSVRFETLSRLVPILTKASRTGLALDLQDILERYAFDNICKVAFNFDPGCLGGDGTAGSEFMRAFEDAATLSSGRFRYAFRHMWSVKKFFDIGSERKLKNSIAIVHEFANNIIRSRMEEKTE 840
            K YP+ GS    L N HR + W+++IL+  P+ T + +RP     V TA PA V+HIL+TNF  Y KG  F   + DFLG GIFN+DGE WK QR+ +S+EFNT+SLR FV   V  E   RLVP+L++AS +   LD QDIL+R  FDNIC +AF +DP  L         F +AF++++ LS  R       +W VK+F +IG ER+LK ++A V   A  I++++ +E  E
Sbjct:   44 KSYPIFGSAFSLLANFHRRIQWTSDILQTIPSSTFVLHRPFGARQVFTAQPAVVQHILRTNFTCYGKGLTFYQSINDFLGDGIFNADGESWKFQRQISSHEFNTRSLRKFVETVVDVELSDRLVPVLSQASNSQTTLDFQDILQRLTFDNICMIAFGYDPEYL-LPSLPEIPFAKAFDESSQLSIERLNALIPLLWKVKRFLNIGVERQLKEAVAEVRGLATKIVKNKKKELKE 276          
BLAST of FC878228 vs. ExPASy Swiss-Prot
Match: C86A1_ARATH (Cytochrome P450 86A1 OS=Arabidopsis thaliana GN=CYP86A1 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.708e-38
Identity = 98/254 (38.58%), Postives = 135/254 (53.15%), Query Frame = 1
Query:  103 FFTSYKRPAVGFKHYPVVGSLPGYLRNRHRFLDWSTEILKHC----PTGTAIFYRPGKIHG--VITANPANVEHILKTNFENYPKGQRFVTLLEDFLGRGIFNSDGELWKVQRKTASYEFNTKSLRNFVMDSVRFETLSRLVPILTKASRTGLALDLQDILERYAFDNICKVAFNFDPGCLGGDGTAGSEFMRAFEDAATLSSGRFRYAFRHMWSVKKFFDIGSERKLKNSIAIVHEFANNIIRSRMEEKTENM 846
            +F    R   G K  P VGSLP  + NR R  DW  + L+       T T +     K  G   +T +P NVEHILKT F+NYPKG  +     D LG+GIFNSDG+ W +QRKTA+ EF T++LR  +   V     +RL  IL +A +    +DLQD+  R  FDNIC + F  DP  L  D    + F  AF+ A   +  R  Y    +W ++K   IGSE KLK S+ +V  + N+ I +R    ++++
Sbjct:   22 WFYFLSRRLTGPKVLPFVGSLPYLIANRSRIHDWIADNLRATGGTYQTCTMVIPFVAKAQGFYTVTCHPKNVEHILKTRFDNYPKGPMWRAAFHDLLGQGIFNSDGDTWLMQRKTAALEFTTRTLRQAMARWVNGTIKNRLWLILDRAVQNNKPVDLQDLFLRLTFDNICGLTFGKDPETLSLD-LPDNPFSVAFDTATEATLKRLLYT-GFLWRIQKAMGIGSEDKLKKSLEVVETYMNDAIDARKNSPSDDL 273          
BLAST of FC878228 vs. ExPASy Swiss-Prot
Match: C86A2_ARATH (Cytochrome P450 86A2 OS=Arabidopsis thaliana GN=CYP86A2 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.495e-37
Identity = 96/249 (38.55%), Postives = 133/249 (53.41%), Query Frame = 1
Query:  103 FFTSYKRPAVGFKHYPVVGSLPGYLRNRHRFLDWSTEILKHC--PTGTAIFYRP--GKIHGVITA--NPANVEHILKTNFENYPKGQRFVTLLEDFLGRGIFNSDGELWKVQRKTASYEFNTKSLRNFVMDSVRFETLSRLVPILTKASRTGLALDLQDILERYAFDNICKVAFNFDPGCLGGDGTAGSEFMRAFEDAATLSSGRFRYAFRHMWSVKKFFDIGSERKLKNSIAIVHEFANNIIRSRMEE 831
            +F    R   G + +PV+GSLPG +  R R  DW TE L+ C     T I   P   K  G++T   +P N+EH+LKT F+NYPKG  +  +  DFLG+GIFNSDG+ W  QRKTA+ EF T++LR  +   V      R  PIL  A      +DLQD++ R  FDNIC +AF  D       G   + F  AF+ A   S  RF      +W +KK+  +G E  L  S+  +  + + +I +R +E
Sbjct:   19 WFQRISRWLKGPRVWPVLGSLPGLIEQRDRMHDWITENLRACGGTYQTCICAVPFLAKKQGLVTVTCDPKNIEHMLKTRFDNYPKGPTWQAVFHDFLGQGIFNSDGDTWLFQRKTAALEFTTRTLRQAMGRWVNRGIKLRFCPILETAQNNYEPVDLQDLILRLTFDNICGLAFGKDTRTC-APGLPENGFASAFDRATEASLQRFILP-EFLWRLKKWLGLGLEVSLSRSLGEIDGYLDAVINTRKQE 265          
BLAST of FC878228 vs. ExPASy Swiss-Prot
Match: C04C1_PINTA (Cytochrome P450 704C1 OS=Pinus taeda GN=CYP704C1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.120e-32
Identity = 84/231 (36.36%), Postives = 129/231 (55.84%), Query Frame = 1
Query:  148 PVVGSLPGYLRNRHRFLDWSTEILKHCPTGTAIFYRPGKIHGVITANPANVEHILKTNFENYPKGQRFVTLLEDFLGRGIFNSDGELWKVQRKTASYEFNTKSLRNFVMDSVRFETLSRLVPILTKASRTGLALDLQDILERYAFDNICKVAFNFDPGCLGGD-GTAGSE--FMRAFEDAATLSSGRFRYAFRHMWSVKKFFDIGSERKLKNSIAIVHEFANNIIRSRMEE 831
            PVVG++  +  N  R  D+ T+  +   T   ++        V T +P NVEHILKTNF NY KG     +++D LG GIFN DG+ W+ QRK AS EF +K L++F    V     ++L  IL +A++  L++++QD+  R + D+ICKV F  D   L      +G E  F +AF+ A  +     R+     W V++FF++GSE  L+++I +V +F   +I  R +E
Sbjct:   38 PVVGTMLNHAINFERLHDYHTDQAQRYKTFRVVY---PTCSYVFTTDPVNVEHILKTNFANYDKGTFNYDIMKDLLGDGIFNVDGDKWRQQRKLASSEFASKVLKDF-SSGVFCNNAAKLANILAQAAKLNLSVEMQDLFMRSSLDSICKVVFGIDINSLSSSKAESGPEASFAKAFDVANAMVF--HRHMVGSFWKVQRFFNVGSEAILRDNIKMVDDFLYKVIHFRRQE 262          
The following BLAST results are available for this feature:
BLAST of FC878228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
C94A1_VICSA2.008e-5546.19Cytochrome P450 94A1 OS=Vicia sativa GN=CYP94A1 PE... [more]
C94A2_VICSA6.686e-5144.87Cytochrome P450 94A2 OS=Vicia sativa GN=CYP94A2 PE... [more]
C86A1_ARATH1.708e-3838.58Cytochrome P450 86A1 OS=Arabidopsis thaliana GN=CY... [more]
C86A2_ARATH5.495e-3738.55Cytochrome P450 86A2 OS=Arabidopsis thaliana GN=CY... [more]
C04C1_PINTA3.120e-3236.36Cytochrome P450 704C1 OS=Pinus taeda GN=CYP704C1 P... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA79DF12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA79DF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878228 ID=FC878228; Name=FC878228; organism=Citrus clementina; type=EST; length=847bp
AGAGATCCTTATCTCCGTAGCTTGATTCTAGCTATGGAAATGCTCCTCTC
TCTTCAATCTTTCATTTTCATCTCCCTCCTCTCTCTTTACCTCTACTTGT
GCTTTTTTACTTCATACAAAAGACCTGCTGTCGGCTTTAAACATTACCCT
GTCGTCGGATCCTTGCCCGGATACTTGAGAAACCGCCACCGCTTCCTCGA
CTGGAGCACCGAAATCCTTAAACACTGCCCCACGGGCACGGCCATCTTTT
ACCGCCCCGGCAAAATTCACGGCGTCATCACGGCAAACCCTGCAAACGTC
GAACACATACTCAAGACCAACTTCGAGAACTACCCAAAAGGTCAACGCTT
CGTTACCCTTCTCGAAGATTTTCTCGGCCGAGGAATCTTTAACTCCGATG
GCGAGTTATGGAAAGTACAGAGGAAAACGGCTAGCTACGAGTTCAACACA
AAATCGCTCCGAAATTTCGTGATGGACAGCGTTAGGTTCGAGACTCTATC
GAGGTTAGTTCCGATTCTCACAAAAGCGTCCAGGACCGGACTGGCGTTGG
ATTTACAAGATATTTTGGAACGTTATGCGTTTGATAATATTTGTAAAGTG
GCATTTAACTTCGATCCCGGTTGTCTCGGCGGCGACGGAACTGCTGGTTC
AGAGTTTATGCGGGCTTTTGAAGATGCTGCAACGCTTAGTTCGGGGAGAT
TCCGATACGCTTTCAGGCATATGTGGAGTGTCAAGAAGTTCTTTGACATC
GGATCAGAGCGAAAGCTAAAGAATTCAATTGCAATAGTTCATGAATTTGC
AAATAACATTATACGTTCAAGAATGGAAGAAAAAACGGAGAATATGG
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