FC878284

Overview
NameFC878284
Unique NameFC878284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length879
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878284_ssr18 microsatellite FC878284_ssr18:18..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13904 contig Ccv1_Contig13904:48..926. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878284 vs. ExPASy Swiss-Prot
Match: ERG1_PANGI (Squalene monooxygenase OS=Panax ginseng PE=2 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.944e-89
Identity = 158/198 (79.80%), Postives = 176/198 (88.89%), Query Frame = 3
Query:  285 DVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFXNHGHVV 878
            DVI          LA TLA DGRRVHVIERDL+E DRIVGELLQPGGYLKLIELGLEDCV +IDAQRVFGYAL+ DG  T++SYPLEKFHSDVAGR FHNGRFVQR+REKAASLPNVR+EQGTVTSL+E+KG++KGVQYKTK G+EL+A+APLTIVCDGCFSNLRRSLCNPKV+VPSCFVGL+LEN +LP  NHGHV+
Sbjct:   76 DVIIVGAGVAGSALAYTLANDGRRVHVIERDLTEQDRIVGELLQPGGYLKLIELGLEDCVNEIDAQRVFGYALYMDGKNTRLSYPLEKFHSDVAGRSFHNGRFVQRMREKAASLPNVRMEQGTVTSLVEKKGSVKGVQYKTKDGQELSAFAPLTIVCDGCFSNLRRSLCNPKVEVPSCFVGLILENIDLPHINHGHVI 273          
BLAST of FC878284 vs. ExPASy Swiss-Prot
Match: ERG11_ARATH (Squalene monooxygenase 1,1 OS=Arabidopsis thaliana GN=SQP1,1 PE=2 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 4.146e-59
Identity = 117/191 (61.26%), Postives = 139/191 (72.77%), Query Frame = 3
Query:  285 DVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEK--FHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNL 851
            DVI          LA  LAKDGRRVHVIERDL EP+RI+GE +QPGG L L +LGLEDC+E IDAQ+  G  ++KDG     S+P++   F  D + R FHNGRFVQRLR+KA+SLPNVRLE+GTV SL+EEKG IKGV YK  AGEE TA APLT+VCDGC+SNLRRSL +   +V S  VG + +NC L
Sbjct:   47 DVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERIMGEFMQPGGRLMLSKLGLEDCLEGIDAQKATGMTVYKDGKEAVASFPVDNNNFPFDPSARSFHNGRFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGFISKNCQL 237          
BLAST of FC878284 vs. ExPASy Swiss-Prot
Match: ERG11_BRANA (Squalene monooxygenase 1,1 OS=Brassica napus GN=SQP1,1 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.021e-57
Identity = 118/213 (55.40%), Postives = 146/213 (68.54%), Query Frame = 3
Query:  216 DNGADSLRKTPTTALNGECPFDADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEK-FHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNL 851
            +N    + K P  A       DADVI          LA  LAKDGRRVHVIERD+ EP R++GE +QPGG L L +LGLEDC+E ID Q   G A++KDG +  +S+P +  F  +  GR F+NGRFVQRLR+KA+SLP V+LE+GTV SL+EEKG IKGV YK  AGEE TA+APLT+VCDGC+SNLRRS+ +   +V S  VG V +NC L
Sbjct:   26 NNRRKKVAKLPDAATEVRRDGDADVIIVGAGVGGSALAYALAKDGRRVHVIERDMREPVRMMGEFMQPGGRLLLSKLGLEDCLEGIDEQIATGLAVYKDGQKALVSFPEDNDFPYEPTGRAFYNGRFVQRLRQKASSLPTVQLEEGTVKSLIEEKGVIKGVTYKNSAGEETTAFAPLTVVCDGCYSNLRRSVNDNNAEVISYQVGYVSKNCQL 238          
BLAST of FC878284 vs. ExPASy Swiss-Prot
Match: ERG12_BRANA (Squalene monooxygenase 1,2 OS=Brassica napus GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.742e-57
Identity = 112/199 (56.28%), Postives = 143/199 (71.86%), Query Frame = 3
Query:  285 DVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLE-KFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFXNHGHVV 878
            DVI          LA  LAKDGRRVHVIERD+ EP R++GE +QPGG L L +LGL+DC+E+IDAQ+  G  LFKDG  T   +P++  F  + +GR FHNGRFVQRLR+KA+SLPNVRLE+GTV SL+EEKG +KGV YK  +GEE T++APLT+VCDGC SNLRRSL +   +V +  +G +  NC L   +  H++
Sbjct:   50 DVIIVGAGVGGSALAYALAKDGRRVHVIERDMREPVRMMGEFMQPGGRLMLSKLGLQDCLEEIDAQKSTGIRLFKDGKETVACFPVDTNFPYEPSGRFFHNGRFVQRLRQKASSLPNVRLEEGTVRSLIEEKGVVKGVTYKNSSGEETTSFAPLTVVCDGCHSNLRRSLNDNNAEVTAYEIGYISRNCRLEQPDKLHLI 248          
BLAST of FC878284 vs. ExPASy Swiss-Prot
Match: ERG12_ARATH (Squalene monooxygenase 1,2 OS=Arabidopsis thaliana GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.604e-56
Identity = 112/202 (55.45%), Postives = 140/202 (69.31%), Query Frame = 3
Query:  282 ADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEK--FHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNP-KVDVPSCFVGLVLENCNLPFXNHGHVV 878
            ADVI          LA  LAKDGRRVHVIERD+ EP+R++GE +QPGG L L +LGL+DC+E IDAQ+  G A++KDG      +P++   F  + + R FHNGRFVQ+LR KA SL NVRLE+GTV SLLEEKG +KGV YK K GEE TA APLT+VCDGC+SNLRRSL +    ++ S  VG + +NC L      H++
Sbjct:   46 ADVIIVGAGVGGSALAYALAKDGRRVHVIERDMREPERMMGEFMQPGGRLMLSKLGLQDCLEDIDAQKATGLAVYKDGKEADAPFPVDNNNFSYEPSARSFHNGRFVQQLRRKAFSLSNVRLEEGTVKSLLEEKGVVKGVTYKNKEGEETTALAPLTVVCDGCYSNLRRSLNDDNNAEIMSYIVGYISKNCRLEEPEKLHLI 247          
BLAST of FC878284 vs. ExPASy Swiss-Prot
Match: ERG13_ARATH (Squalene monooxygenase 2 OS=Arabidopsis thaliana GN=SQP2 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 8.946e-54
Identity = 110/199 (55.28%), Postives = 136/199 (68.34%), Query Frame = 3
Query:  285 DVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEK-FHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFXNHGHVV 878
            DVI          LA  LAKDGRRVHVIERDL EP R +GEL+Q GG   L +LGLEDC+E IDAQ     A++KDG    + +P +K F  +  GR   NGR VQRLR+KAASL NV+LE+GTV SL+EE+G +KGV YK  AGEE+TA+APLT+VCDGC+SNLRRSL +   +V S  VG V +N  L   +  H++
Sbjct:   45 DVIIVGAGVAGASLAYALAKDGRRVHVIERDLKEPQRFMGELMQAGGRFMLAQLGLEDCLEDIDAQEAKSLAIYKDGKHATLPFPDDKSFPHEPVGRLLRNGRLVQRLRQKAASLSNVQLEEGTVKSLIEEEGVVKGVTYKNSAGEEITAFAPLTVVCDGCYSNLRRSLVDNTEEVLSYMVGYVTKNSRLEDPHSLHLI 243          
BLAST of FC878284 vs. ExPASy Swiss-Prot
Match: ERG1_HUMAN (Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 8.685e-41
Identity = 94/203 (46.31%), Postives = 124/203 (61.08%), Query Frame = 3
Query:  279 DADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRT--QISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFXNHGHVV 878
            D +VI          L   L++DGR+V VIERDL EPDRIVGE LQPGGY  L +LGL D VE +DAQ V GY +    +++  QI YPL + +   +GR FH+GRF+  LR+ A + PN +  +G V  LLEE   + GVQYK K  G+    +APLT+V DG FS  R+SL + KV V S FVG +++N      NH  ++
Sbjct:  123 DPEVIIVGAGVLGSALVAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYHVLKDLGLGDTVEGLDAQVVNGYMIHDQESKSEVQIPYPLSENNQVQSGRAFHHGRFIMSLRKAAMAEPNAKFIEGVVLQLLEEDDVVMGVQYKDKETGDIKELHAPLTVVADGLFSKFRKSLVSNKVSVSSHFVGFLMKNAPQFKANHAELI 325          
BLAST of FC878284 vs. ExPASy Swiss-Prot
Match: ERG1_MOUSE (Squalene monooxygenase OS=Mus musculus GN=Sqle PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.300e-40
Identity = 91/191 (47.64%), Postives = 121/191 (63.35%), Query Frame = 3
Query:  279 DADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYAL--FKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLEN 842
            D +VI          LA  L++DGR+V VIERDL EPDRIVGELLQPGGY  L ELGL D VE ++A  + GY +  ++  +  QI YPL + +   +G  FH+GRF+  LR+ A + PNV+  +G V  LLEE   + GVQYK K  G+    +APLT+V DG FS  R+SL + KV V S FVG ++++
Sbjct:  121 DPEVIIVGSGVLGSALAAVLSRDGRKVTVIERDLKEPDRIVGELLQPGGYRVLQELGLGDTVEGLNAHHIHGYIVHDYESRSEVQIPYPLSETNQVQSGIAFHHGRFIMSLRKAAMAEPNVKFIEGVVLQLLEEDDAVIGVQYKDKETGDTKELHAPLTVVADGLFSKFRKSLISSKVSVSSHFVGFLMKD 311          
BLAST of FC878284 vs. ExPASy Swiss-Prot
Match: ERG1_RAT (Squalene monooxygenase OS=Rattus norvegicus GN=Sqle PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.766e-39
Identity = 91/217 (41.94%), Postives = 130/217 (59.91%), Query Frame = 3
Query:  201 RSKSEDNGADSLRKTPTTALNGECPFDADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRT--QISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLEN 842
            R + E N +++      T+++     D +VI          LA  L++DGR V VIERDL EPDRI+GE LQPGGY  L ELGL D VE ++A  + GY +    +R+  QI YP+ + +   +G  FH+G+F+  LR+ A + PNV+  +G V  LLEE   + GVQYK K  G+    +APLT+V DG FS  R++L + KV V S FVG ++++
Sbjct:   96 RRRKEVNLSETTLTGAATSVSTSSVTDPEVIIIGSGVLGSALATVLSRDGRTVTVIERDLKEPDRILGECLQPGGYRVLRELGLGDTVESLNAHHIHGYVIHDCESRSEVQIPYPVSENNQVQSGVAFHHGKFIMSLRKAAMAEPNVKFIEGVVLRLLEEDDAVIGVQYKDKETGDTKELHAPLTVVADGLFSKFRKNLISNKVSVSSHFVGFIMKD 312          
BLAST of FC878284 vs. ExPASy Swiss-Prot
Match: ERG1_SCHPO (Probable squalene monooxygenase OS=Schizosaccharomyces pombe GN=SPBC713.12 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.461e-37
Identity = 87/203 (42.86%), Postives = 113/203 (55.67%), Query Frame = 3
Query:  279 DADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEK--GTIKGVQYKTKAGEELTAY-APLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFXNHGHVV 878
            DAD+I          L   L + GR+V V+ERD+SEPDRIVGELLQPGG   L ++G+ D VE ID Q   GY +F   +   + YP +       G GFH GRFV  LR+   S PNV + + TV  LL ++    I GV   +K  E    Y APLTIVCDGCFS  R++  +  + V   F+GL+L N +      GHV+
Sbjct:    5 DADIIIIGAGITGCALGAALGRQGRKVLVLERDMSEPDRIVGELLQPGGIEALEKIGIADAVEGIDGQWTSGYQIFYGDSNVSVPYPSKPNGGAYQGIGFHYGRFVMNLRKALTSTPNVTVTEATVNELLRDETGEVITGVVTSSKKSESPVEYKAPLTIVCDGCFSKFRKAFIDHPIQVTDHFLGLILTNPDYIAPGRGHVI 207          
The following BLAST results are available for this feature:
BLAST of FC878284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
ERG1_PANGI2.944e-8979.80Squalene monooxygenase OS=Panax ginseng PE=2 SV=1[more]
ERG11_ARATH4.146e-5961.26Squalene monooxygenase 1,1 OS=Arabidopsis thaliana... [more]
ERG11_BRANA1.021e-5755.40Squalene monooxygenase 1,1 OS=Brassica napus GN=SQ... [more]
ERG12_BRANA1.742e-5756.28Squalene monooxygenase 1,2 OS=Brassica napus GN=SQ... [more]
ERG12_ARATH5.604e-5655.45Squalene monooxygenase 1,2 OS=Arabidopsis thaliana... [more]
ERG13_ARATH8.946e-5455.28Squalene monooxygenase 2 OS=Arabidopsis thaliana G... [more]
ERG1_HUMAN8.685e-4146.31Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=... [more]
ERG1_MOUSE3.300e-4047.64Squalene monooxygenase OS=Mus musculus GN=Sqle PE=... [more]
ERG1_RAT4.766e-3941.94Squalene monooxygenase OS=Rattus norvegicus GN=Sql... [more]
ERG1_SCHPO4.461e-3742.86Probable squalene monooxygenase OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA74DE11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA74DE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878284 ID=FC878284; Name=FC878284; organism=Citrus clementina; type=EST; length=879bp
AAAAAAACTAAAACAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACG
TCGTCTGGTTTCGGTTTCGGTTTCTGTCCGGACCGGTGGAAAAGAAAAGA
AATGGCGGATCAGTACACGTGGGGATTGATCTTGGGCGCTGTATTGGGGC
TGGTGGCCGTTTATAACCTGGGCCTTCTTGCTTTGTATAATCTTGTCATG
AGGAGCAAGAGCGAGGACAACGGTGCAGATTCCTTACGCAAGACTCCAAC
TACGGCTCTAAATGGCGAATGCCCCTTCGATGCTGACGTCATCGTCGTCG
GCGCCGGCGTCGCTGGCGCTGCTCTCGCTAACACTCTTGCCAAGGATGGT
CGTCGAGTGCATGTGATTGAAAGGGATTTGTCGGAGCCTGACCGAATTGT
TGGTGAATTGCTGCAACCCGGGGGCTACCTCAAATTAATTGAGTTAGGAC
TTGAAGATTGTGTGGAGCAAATTGATGCTCAGCGCGTTTTTGGTTATGCC
CTTTTCAAGGATGGAAATAGGACCCAAATATCTTATCCCTTGGAAAAGTT
TCACTCAGATGTTGCAGGTAGAGGATTTCACAATGGACGTTTCGTACAGA
GGCTGCGGGAGAAAGCTGCTTCCCTTCCAAATGTACGATTGGAGCAAGGA
ACAGTCACTTCCCTGCTAGAAGAAAAAGGGACAATTAAAGGCGTGCAATA
CAAGACTAAGGCTGGTGAAGAACTGACAGCGTATGCTCCTTTGACAATTG
TATGTGATGGCTGTTTTTCGAATTTGCGTCGCTCACTTTGCAATCCTAAG
GTAGATGTTCCTTCCTGTTTTGTTGGCTTGGTCCTTGAGAACTGTAATCT
TCCATTTNGAAATCATGGGCATGTTGTAC
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