FC878339

Overview
NameFC878339
Unique NameFC878339
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length837
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878339_ssr1 microsatellite FC878339_ssr1:1..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig8014 contig Ccv1_Contig8014:63..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878339 vs. ExPASy Swiss-Prot
Match: MTG1_MOUSE (Mitochondrial GTPase 1 OS=Mus musculus GN=Mtg1 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.908e-31
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 3
Query:  564 LEKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLNTRG 803
            L   K A VG  PG+T+ +    ++  RP +++LDTPGVL P I  +ETGLKLAL G++ D +VGEE +A YLL  LN  G
Sbjct:  167 LRTGKAARVGGEPGITRAVTSRIQVCERPLVFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLNRHG 247          

HSP 2 Score: 77.411 bits (189), Expect = 1.908e-31
Identity = 50/141 (35.46%), Postives = 68/141 (48.23%), Query Frame = 2
Query:  152 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRH----------FDSCKQDCIAINAHSRSSXXXXXXXXXXXXXXXISREPTLLVMVVGVPNVGKSALINSIHQ 544
            WFPGHMA   + ++  LK  D VIEV D+RIP S  +P  Q  L  K  ++ LNK DLA+     K V+           F +C +D      + +                  +  P   +MVVGVPNVGKS+LINS+ +
Sbjct:   29 WFPGHMAKGLKKMQSSLKSVDCVIEVHDARIPFSGRNPLFQELLGLKPHLLVLNKMDLADLTEQQKIVQRLEEKGLSNVLFTNCVKD-----ENIKQIVPKVMELIRCSYRYHRAETPEYCIMVVGVPNVGKSSLINSLRR 164          
BLAST of FC878339 vs. ExPASy Swiss-Prot
Match: MTG1_HUMAN (Mitochondrial GTPase 1 OS=Homo sapiens GN=MTG1 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.211e-31
Identity = 50/143 (34.97%), Postives = 70/143 (48.95%), Query Frame = 2
Query:  152 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRH----------FDSCKQDCIAINAHSRSSXXXXXXXXXXXXXXXISREPTL--LVMVVGVPNVGKSALINSIHQ 544
            WFPGHMA   + ++  LK+ D +IEV D+RIPLS  +P  Q  L  K  ++ LNK DLA+     K ++H          F +C +D                            R+  L   +MV+GVPNVGKS+LINS+ +
Sbjct:   30 WFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPHLLVLNKMDLADLTEQQKIMQHLEGEGLKNVIFTNCVKD-------ENVKQIIPMVTELIGRSHRYHRKENLEYCIMVIGVPNVGKSSLINSLRR 165          

HSP 2 Score: 77.7962 bits (190), Expect = 4.211e-31
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  564 LEKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 794
            L K K   VG  PG+T+ +    +++ RP +++LDTPGVL P I  +ETGLKLAL G++ D +VGEE +A YLL  LN
Sbjct:  168 LRKGKATRVGGEPGITRAVMSKIQVSERPLMFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLN 245          
BLAST of FC878339 vs. ExPASy Swiss-Prot
Match: MTG1_BOVIN (Mitochondrial GTPase 1 OS=Bos taurus GN=MTG1 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 4.212e-31
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  564 LEKTKRATVGPLPGVTQDIAG-FKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 794
            L K K   VG  PG+T+ +    ++  RP +++LDTPGVL P IP +ETGLKLAL G++ D +VGEE +A +LL  LN
Sbjct:  168 LRKGKATRVGGEPGITRAVMSRIQVCERPLMFLLDTPGVLAPRIPSVETGLKLALCGTVLDHLVGEETLADFLLYTLN 245          

HSP 2 Score: 76.6406 bits (187), Expect = 4.212e-31
Identity = 46/141 (32.62%), Postives = 69/141 (48.94%), Query Frame = 2
Query:  152 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRH----------FDSCKQDCIAINAHSRSSXXXXXXXXXXXXXXXISREPTLLVMVVGVPNVGKSALINSIHQ 544
            WFPGHMA   + ++  L++ D +IEV D++IPLS  +P  Q  L  K  ++ LNK DLA+     K ++H          F +C +D      + +                         +MV+GVPNVGKS+LINS+ +
Sbjct:   30 WFPGHMAKGLKKMQSSLRLVDCIIEVHDAQIPLSGRNPLFQETLGLKPHLLVLNKMDLADLKEQQKIIQHLEREGIKHVVFTNCVKD-----ENVKQVIPTVTELVGSSYRYHRGEHVEYCIMVIGVPNVGKSSLINSLRR 165          
BLAST of FC878339 vs. ExPASy Swiss-Prot
Match: RBGA_BACSU (Ribosome biogenesis GTPase A OS=Bacillus subtilis GN=rbgA PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.737e-25
Identity = 46/138 (33.33%), Postives = 73/138 (52.90%), Query Frame = 2
Query:  146 INWFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANPNILNKWVRHFDSCKQDCIAINAHSRSSXXXXXXXXXXXXXXXISR-------EPTLLVMVVGVPNVGKSALINSI 538
            I WFPGHMA A R +  +LK+ D+V E+ D+RIP+SS +P ++  L  K R++ LNK D A+  +  +W  HF++     ++IN+ +                    R          +  +++G+PNVGKS LIN +
Sbjct:    3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRL 140          

HSP 2 Score: 49.6766 bits (117), Expect = 1.737e-25
Identity = 28/76 (36.84%), Postives = 42/76 (55.26%), Query Frame = 3
Query:  564 LEKTKRATVGPLPGVTQDIAGFKIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVL 791
            L K   A  G  PG+T      K+     + +LDTPG+L P   D   GL+LA++G+IKDS++  + +A + L  L
Sbjct:  140 LAKKNIAKTGDRPGITTSQQWVKVGKE--LELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFL 213          
BLAST of FC878339 vs. ExPASy Swiss-Prot
Match: MTG1_SCHPO (Mitochondrial GTPase 1 OS=Schizosaccharomyces pombe GN=mtg1 PE=2 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 2.267e-21
Identity = 41/156 (26.28%), Postives = 72/156 (46.15%), Query Frame = 2
Query:  152 WFPGHMAAATRAIKHRLKISDLVIEVRDSRIPLSSAHPGLQPQLSAKRRVIALNKKDLANP-------------NILNK------WVRHFDSCKQDCIAINAHSRSSXXXXXXXXXXXXXXX-ISREPTLLVMVVGVPNVGKSALINSIHQIALSR 559
            W+PGHM    + +K+    +D+ +EVRD+RIPL+S +  ++  L+ K R+I  NK DLA+              N+  +      W +   + ++        S++                  S    + V  VG+PN GKS+++NS+  +AL +
Sbjct:   17 WYPGHMNKTLKRLKNLTSSNDIFVEVRDARIPLTSRNYVMEDFLNKKNRIIVYNKCDLADTFHTKAKVSKHRIQNLAQQFQNVECWFKETSTPEKSAFITPYVSKAPYFAKELLRLIRTLVDQASANGRVYVYFVGMPNTGKSSILNSLRNVALRK 172          

HSP 2 Score: 61.2326 bits (147), Expect = 2.267e-21
Identity = 34/80 (42.50%), Postives = 49/80 (61.25%), Query Frame = 3
Query:  558 VFLEKTKRATVGPLPGVTQDIAGF-KIAHRPSIYVLDTPGVLVPSIPDIETGLKLALSGSIKDSVVGEERIAQYLLAVLN 794
            V L K+K A VG  PGVT+ I+   ++ +   +Y+LDTPG++ PSI   E  LKL+L G +K+ +V    +  YLL  LN
Sbjct:  168 VALRKSKSAIVGNYPGVTKRISEIVRLFNDMDVYMLDTPGIMTPSITKPEDMLKLSLVGCVKEGIVHPVTVVDYLLFHLN 247          
The following BLAST results are available for this feature:
BLAST of FC878339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
MTG1_MOUSE1.908e-3149.38Mitochondrial GTPase 1 OS=Mus musculus GN=Mtg1 PE=... [more]
MTG1_HUMAN4.211e-3134.97Mitochondrial GTPase 1 OS=Homo sapiens GN=MTG1 PE=... [more]
MTG1_BOVIN4.212e-3150.00Mitochondrial GTPase 1 OS=Bos taurus GN=MTG1 PE=2 ... [more]
RBGA_BACSU1.737e-2533.33Ribosome biogenesis GTPase A OS=Bacillus subtilis ... [more]
MTG1_SCHPO2.267e-2126.28Mitochondrial GTPase 1 OS=Schizosaccharomyces pomb... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA46AA08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA46AA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878339 ID=FC878339; Name=FC878339; organism=Citrus clementina; type=EST; length=837bp
TGAGTTGAGTTGAGTTGAGTTCATATATTTGCTTCTGTAATCTCTGTTTG
CTAGTGTTAGTGAGAAAGGAGAGATGGGTTTGAAGCGAATAATAAAGAAG
GGTTTGGGATTAGGAGAAATGGGATTCACCAAAGGTGGCGGTAACATCAA
CTGGTTCCCCGGCCACATGGCTGCCGCCACCCGCGCCATCAAACACCGCC
TCAAGATCTCCGACCTCGTCATCGAAGTCCGTGACTCTCGGATTCCTCTG
TCTTCTGCCCACCCTGGCCTGCAGCCACAGCTCTCCGCTAAACGCCGTGT
CATTGCTTTAAACAAGAAAGATTTGGCCAATCCCAACATTTTGAATAAAT
GGGTTCGTCATTTTGATTCGTGCAAGCAAGATTGTATAGCGATAAACGCA
CATAGTAGGAGTTCTGTTCAAAAGCTTCTTGAACTTGTGGAGTTGAAACT
AAAGGAAGTGATTTCAAGGGAGCCCACTCTCCTTGTAATGGTTGTGGGTG
TTCCTAACGTCGGGAAATCGGCTTTAATCAACTCAATTCATCAAATTGCA
TTGTCTCGTTTTCCTGGAGAAAACTAAGCGAGCTACGGTTGGACCATTGC
CTGGTGTCACTCAAGATATTGCAGGATTCAAGATTGCTCATCGGCCTAGC
ATATATGTTCTAGACACGCCAGGTGTATTGGTTCCAAGTATCCCAGATAT
CGAAACAGGGTTGAAACTGGCTCTTTCAGGTTCTATTAAAGATTCAGTTG
TGGGTGAGGAGCGCATTGCTCAATACTTGCTCGCAGTTCTAAATACCCGA
GGCACTCCCCTTCACTGGAGGCACCTGAATAACAGAA
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