FC878342

Overview
NameFC878342
Unique NameFC878342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length870
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878342_ssr123 microsatellite FC878342_ssr123:123..137. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878342_ssr227 microsatellite FC878342_ssr227:227..250. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878342_ssr722 microsatellite FC878342_ssr722:722..737. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11494 contig Ccv1_Contig11494:67..937. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878342 vs. ExPASy Swiss-Prot
Match: FKBP7_ARATH (Probable FKBP-type peptidyl-prolyl cis-trans isomerase 7, chloroplastic OS=Arabidopsis thaliana GN=At5g13410 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.575e-13
Identity = 48/147 (32.65%), Postives = 74/147 (50.34%), Query Frame = 1
Query:  277 GVKALDLRLGRGPVPVDGDQVAIH-------YYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMKVGGIRRVVIPPSQGYQNTSQE---PIPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIELVSL 687
            G++  DLR+G GP+   GD+V +        YYGR+   +      +++  D+      F F LGS +VIP  E AV  M +GGIRR+++PP  GY +       P P  F  ++ L   + N       +G    TL+FD+EL+ +
Sbjct:  118 GLQYKDLRVGTGPIAKKGDKVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKEF----FKFTLGSNEVIPAFEEAVSGMALGGIRRIIVPPELGYPDNDYNKSGPRPMTFSGQRALDFVLRN-------QGLIDKTLLFDVELLKI 253          
BLAST of FC878342 vs. ExPASy Swiss-Prot
Match: FKBP3_YARLI (FK506-binding protein 3 OS=Yarrowia lipolytica GN=FPR3 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.866e-11
Identity = 42/101 (41.58%), Postives = 52/101 (51.49%), Query Frame = 1
Query:  274 GGVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMKVGGIRRVVIPPSQGYQNTSQEPIPPN 576
            GGVK  D  +G GP    G +V + Y G+LA   G  FDS    K       PF F +G G+VI G +  V+ MKV G RR++IPP   Y       IPPN
Sbjct:  303 GGVKIEDRTVGEGPSAKVGSKVGVRYVGKLA--NGKVFDSNSKGK-------PFYFSVGKGEVIRGWDIGVQGMKVKGERRIIIPPGMAYGKQKLPGIPPN 394          
BLAST of FC878342 vs. ExPASy Swiss-Prot
Match: FKBP3_DEBHA (FK506-binding protein 3 OS=Debaryomyces hansenii GN=FPR3 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.866e-11
Identity = 43/101 (42.57%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  274 GGVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMKVGGIRRVVIPPSQGYQNTSQEPIPPN 576
            GGV   D + G+G     G++V I Y G+L  K G  FD     K+ SG+P  F+F LG G+ I G +  V  M VGG RRVVIPP  GY + +   +P N
Sbjct:  333 GGVVTEDRKTGKGQTAKSGNKVGIRYIGKL--KNGKVFD-----KNTSGKP--FVFGLGKGECIKGFDLGVAGMAVGGERRVVIPPKMGYGSQALPGLPAN 424          
BLAST of FC878342 vs. ExPASy Swiss-Prot
Match: FKBP3_CANAL (FK506-binding protein 3 OS=Candida albicans GN=FPR3 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.429e-11
Identity = 51/139 (36.69%), Postives = 64/139 (46.04%), Query Frame = 1
Query:  274 GGVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMKVGGIRRVVIPPSQGYQNTSQEPIPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIELVSLR 690
            GGV   D ++G G     G +V I Y G+L  K G  FD     K+ SG+P  F F LG G+ I G +  V  M VGG RRV+IPP  GY + +   IP N                           L FDI+LVSL+
Sbjct:  322 GGVITEDRKIGSGATAKSGAKVGIRYIGKL--KNGKVFD-----KNTSGKP--FSFKLGKGECIKGFDLGVTGMAVGGERRVIIPPKMGYGSQALPGIPAN-------------------------SELTFDIKLVSLK 426          
The following BLAST results are available for this feature:
BLAST of FC878342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FKBP7_ARATH7.575e-1332.65Probable FKBP-type peptidyl-prolyl cis-trans isome... [more]
FKBP3_YARLI1.866e-1141.58FK506-binding protein 3 OS=Yarrowia lipolytica GN=... [more]
FKBP3_DEBHA1.866e-1142.57FK506-binding protein 3 OS=Debaryomyces hansenii G... [more]
FKBP3_CANAL5.429e-1136.69FK506-binding protein 3 OS=Candida albicans GN=FPR... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA91BA08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA91BA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878342 ID=FC878342; Name=FC878342; organism=Citrus clementina; type=EST; length=870bp
CAGGGGGCTGGGCAGGGAAGAGAGCGGGATCATACGATGATTCGGTGCTT
CGCGCCTGTACGGTCGGTCCATGCTTTCCACAATCACACCATTCGTTTTG
TCACTCCCAAACTCACCGCAAATTCTTCTTCTTCTTCATTATTATCGACG
AGAAGAGAAGCTCTAACCGTGTCAATTGTAACCACCACTCTTGAAATACT
GATATCGTCATTCTCTGCTTCTTCTTCTGCTGCTGCTGCTGCTGCTGCTG
AGTTGTTGGAGCTCCCAAATTCCGGTGGCGTTAAAGCTTTGGACCTTCGC
CTCGGCAGGGGTCCGGTTCCCGTCGACGGCGACCAGGTTGCAATACACTA
CTATGGAAGATTGGCTGCTAAACAGGGCTGGCGCTTTGACTCTACGTATG
ATCACAAAGATCAATCTGGGGAACCAATTCCTTTTCTCTTCATCCTTGGT
TCTGGGAAAGTGATTCCAGGGATTGAAGCAGCTGTGAGATCTATGAAAGT
TGGAGGTATCCGTCGGGTAGTAATTCCCCCGTCACAAGGATATCAGAACA
CATCACAAGAACCAATACCTCCTAATTTCTTTGATCGACAGAGGCTGTTT
ACCACCATTTTCAACCCAACCCGTCTTGCCAATGGAGAAGGTTCAACGCT
TGGGACTTTGATTTTTGATATTGAGCTGGTGAGCCTGAGGCATTAGTGAA
GTCCACCACCCACTTACCGTATATGTATGTATGTATGCCGTGTAGCTCTC
TATTGAGATCTTAGCAGAATTAACGTTGAACATCTTATTAATTCTTGTTT
GTGTCATACGGTGTATGTGTACAATGTAATAGTTGATTAATCTATTACAT
ATATCATGATATGCAAACGA
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