FC878343 | Citrus Genome Database

Overview


Name	FC878343
Unique Name	FC878343
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	832

Libraries


Library Name	Type
IVIA1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig7365	contig	Ccv1_Contig7365:26..855.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC878343 vs. ExPASy Swiss-Prot
Match: RUVB2_XENLA (RuvB-like 2 OS=Xenopus laevis GN=ruvbl2 PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 3.620e-91
Identity = 163/230 (70.87%), Postives = 186/230 (80.87%), Query Frame = 3

Query:   99 LRGLGLHSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAISMGMAKSLGLETPFAMISGSKIFSLEMSKTEPLMQAFIKAIGVRIKXXXXXXXXXXXXXQIDRPATSGAAANTGKLTLKTTEMETVYDLGGKMIEALGKEKVHSGDVIAIDKVSGNITNLVRSFSRSKDYDAMGPHTKFVQCPDGELHNRIEVVHCVTLHEIDVINSTTQG 788
            +RGLGL  +LE R VS+GMVGQL +R+AAGVIL+MIKEGKIAGRAVLIAGQPGTGKTAI+MGMA++LG +TPF  I+GS+IFSLEMSKTE L QAF ++IGVRIK             QIDRPAT G  A  GKLTLKTTEMET+YDLG KMIE+L KEKV +GDVI IDK +G IT L R+F+R++DYDAMG  TKFVQCPDGEL  R EVVH V+LHEIDVINS TQG
Sbjct:   27 IRGLGLDDALEPRQVSQGMVGQLASRRAAGVILEMIKEGKIAGRAVLIAGQPGTGKTAIAMGMAQALGSDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEVQIDRPAT-GTGAKVGKLTLKTTEMETIYDLGTKMIESLTKEKVQAGDVITIDKATGKITKLGRAFTRARDYDAMGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQG 255

HSP 2 Score: 37.3502 bits (85), Expect = 3.620e-91
Identity = 17/24 (70.83%), Postives = 20/24 (83.33%), Query Frame = 2

Query:   29 MAELKLSESQDLTRIERIGAHSHI 100
            MA  K+ E +D+TRIERIGAHSHI
Sbjct:    4 MAATKVPEVRDVTRIERIGAHSHI 27

HSP 3 Score: 30.4166 bits (67), Expect = 3.620e-91
Identity = 12/16 (75.00%), Postives = 16/16 (100.00%), Query Frame = 1

Query:  784 RGFLALFTGDTGEIRA 831
            +GFLALF+GDTGEI++
Sbjct:  254 QGFLALFSGDTGEIKS 269

[Close]

BLAST of FC878343 vs. ExPASy Swiss-Prot
Match: RUVB2_MOUSE (RuvB-like 2 OS=Mus musculus GN=Ruvbl2 PE=2 SV=3)

HSP 1 Score: 306.22 bits (783), Expect = 3.259e-89
Identity = 159/230 (69.13%), Postives = 185/230 (80.43%), Query Frame = 3

Query:   99 LRGLGLHSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAISMGMAKSLGLETPFAMISGSKIFSLEMSKTEPLMQAFIKAIGVRIKXXXXXXXXXXXXXQIDRPATSGAAANTGKLTLKTTEMETVYDLGGKMIEALGKEKVHSGDVIAIDKVSGNITNLVRSFSRSKDYDAMGPHTKFVQCPDGELHNRIEVVHCVTLHEIDVINSTTQG 788
            +RGLGL  +LE R  S+GMVGQL AR+AAGV+L+MI+EGKIAGRAVLIAGQPGTGKTAI+MGMA++LG +TPF  I+GS+IFSLEMSKTE L QAF ++IGVRIK             QIDRPAT G  +  GKLTLKTTEMET+YDLG KMIE+L K+KV +GDVI IDK +G I+ L RSF+R++DYDAMG  TKFVQCPDGEL  R EVVH V+LHEIDVINS TQG
Sbjct:   28 IRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPAT-GTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQG 256

HSP 2 Score: 35.8094 bits (81), Expect = 3.259e-89
Identity = 17/26 (65.38%), Postives = 20/26 (76.92%), Query Frame = 2

Query:   23 TRMAELKLSESQDLTRIERIGAHSHI 100
            T  A  K+ E +D+TRIERIGAHSHI
Sbjct:    3 TVAATTKVPEIRDVTRIERIGAHSHI 28

HSP 3 Score: 30.4166 bits (67), Expect = 3.259e-89
Identity = 12/16 (75.00%), Postives = 16/16 (100.00%), Query Frame = 1

Query:  784 RGFLALFTGDTGEIRA 831
            +GFLALF+GDTGEI++
Sbjct:  255 QGFLALFSGDTGEIKS 270

[Close]

BLAST of FC878343 vs. ExPASy Swiss-Prot
Match: RUVB2_HUMAN (RuvB-like 2 OS=Homo sapiens GN=RUVBL2 PE=1 SV=3)

HSP 1 Score: 306.22 bits (783), Expect = 3.259e-89
Identity = 159/230 (69.13%), Postives = 185/230 (80.43%), Query Frame = 3

Query:   99 LRGLGLHSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAISMGMAKSLGLETPFAMISGSKIFSLEMSKTEPLMQAFIKAIGVRIKXXXXXXXXXXXXXQIDRPATSGAAANTGKLTLKTTEMETVYDLGGKMIEALGKEKVHSGDVIAIDKVSGNITNLVRSFSRSKDYDAMGPHTKFVQCPDGELHNRIEVVHCVTLHEIDVINSTTQG 788
            +RGLGL  +LE R  S+GMVGQL AR+AAGV+L+MI+EGKIAGRAVLIAGQPGTGKTAI+MGMA++LG +TPF  I+GS+IFSLEMSKTE L QAF ++IGVRIK             QIDRPAT G  +  GKLTLKTTEMET+YDLG KMIE+L K+KV +GDVI IDK +G I+ L RSF+R++DYDAMG  TKFVQCPDGEL  R EVVH V+LHEIDVINS TQG
Sbjct:   28 IRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPAT-GTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQG 256

HSP 2 Score: 35.8094 bits (81), Expect = 3.259e-89
Identity = 17/26 (65.38%), Postives = 20/26 (76.92%), Query Frame = 2

Query:   23 TRMAELKLSESQDLTRIERIGAHSHI 100
            T  A  K+ E +D+TRIERIGAHSHI
Sbjct:    3 TVTATTKVPEIRDVTRIERIGAHSHI 28

HSP 3 Score: 30.4166 bits (67), Expect = 3.259e-89
Identity = 12/16 (75.00%), Postives = 16/16 (100.00%), Query Frame = 1

Query:  784 RGFLALFTGDTGEIRA 831
            +GFLALF+GDTGEI++
Sbjct:  255 QGFLALFSGDTGEIKS 270

[Close]

BLAST of FC878343 vs. ExPASy Swiss-Prot
Match: RUVB2_BOVIN (RuvB-like 2 OS=Bos taurus GN=RUVBL2 PE=2 SV=3)

HSP 1 Score: 306.22 bits (783), Expect = 3.259e-89
Identity = 159/230 (69.13%), Postives = 185/230 (80.43%), Query Frame = 3

Query:   99 LRGLGLHSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAISMGMAKSLGLETPFAMISGSKIFSLEMSKTEPLMQAFIKAIGVRIKXXXXXXXXXXXXXQIDRPATSGAAANTGKLTLKTTEMETVYDLGGKMIEALGKEKVHSGDVIAIDKVSGNITNLVRSFSRSKDYDAMGPHTKFVQCPDGELHNRIEVVHCVTLHEIDVINSTTQG 788
            +RGLGL  +LE R  S+GMVGQL AR+AAGV+L+MI+EGKIAGRAVLIAGQPGTGKTAI+MGMA++LG +TPF  I+GS+IFSLEMSKTE L QAF ++IGVRIK             QIDRPAT G  +  GKLTLKTTEMET+YDLG KMIE+L K+KV +GDVI IDK +G I+ L RSF+R++DYDAMG  TKFVQCPDGEL  R EVVH V+LHEIDVINS TQG
Sbjct:   28 IRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGEVVEIQIDRPAT-GTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQG 256

HSP 2 Score: 35.8094 bits (81), Expect = 3.259e-89
Identity = 17/26 (65.38%), Postives = 20/26 (76.92%), Query Frame = 2

Query:   23 TRMAELKLSESQDLTRIERIGAHSHI 100
            T  A  K+ E +D+TRIERIGAHSHI
Sbjct:    3 TVTATTKVPEIRDVTRIERIGAHSHI 28

HSP 3 Score: 30.4166 bits (67), Expect = 3.259e-89
Identity = 12/16 (75.00%), Postives = 16/16 (100.00%), Query Frame = 1

Query:  784 RGFLALFTGDTGEIRA 831
            +GFLALF+GDTGEI++
Sbjct:  255 QGFLALFSGDTGEIKS 270

[Close]

BLAST of FC878343 vs. ExPASy Swiss-Prot
Match: RUVB2_DANRE (RuvB-like 2 OS=Danio rerio GN=ruvbl2 PE=1 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 7.210e-89
Identity = 158/230 (68.70%), Postives = 186/230 (80.87%), Query Frame = 3

Query:   99 LRGLGLHSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAISMGMAKSLGLETPFAMISGSKIFSLEMSKTEPLMQAFIKAIGVRIKXXXXXXXXXXXXXQIDRPATSGAAANTGKLTLKTTEMETVYDLGGKMIEALGKEKVHSGDVIAIDKVSGNITNLVRSFSRSKDYDAMGPHTKFVQCPDGELHNRIEVVHCVTLHEIDVINSTTQG 788
            +RGLGL  +LE R VS+GMVGQL +R+AAG+IL+MIK+G+IAGRAVLIAGQPGTGKTAI+MG+A+SLG +TPF  ++GS+IFSLEMSKTE L QAF KAIGVRIK             QIDRPAT G  A  GKLTLKTTEMET+YDLG KMIE+L KE+V +GDVI IDK +G I+ L RSF+R++DYDAMG  T+FVQCP+GEL  R EVVH V+LHEIDVINS TQG
Sbjct:   28 IRGLGLDDALEPRQVSQGMVGQLASRRAAGLILEMIKDGQIAGRAVLIAGQPGTGKTAIAMGIAQSLGPDTPFTALAGSEIFSLEMSKTEALSQAFRKAIGVRIKEETEIIEGEVVEIQIDRPAT-GTGAKVGKLTLKTTEMETIYDLGTKMIESLSKERVQAGDVITIDKATGKISKLGRSFTRARDYDAMGAQTQFVQCPEGELQKRKEVVHTVSLHEIDVINSRTQG 256

HSP 2 Score: 36.5798 bits (83), Expect = 7.210e-89
Identity = 16/25 (64.00%), Postives = 21/25 (84.00%), Query Frame = 2

Query:   26 RMAELKLSESQDLTRIERIGAHSHI 100
            ++A  K+ E +D+TRIERIGAHSHI
Sbjct:    4 QVATTKVPEVRDITRIERIGAHSHI 28

HSP 3 Score: 30.4166 bits (67), Expect = 7.210e-89
Identity = 12/16 (75.00%), Postives = 16/16 (100.00%), Query Frame = 1

Query:  784 RGFLALFTGDTGEIRA 831
            +GFLALF+GDTGEI++
Sbjct:  255 QGFLALFSGDTGEIKS 270

[Close]

BLAST of FC878343 vs. ExPASy Swiss-Prot
Match: RUVB2_DROPS (RuvB-like helicase 2 OS=Drosophila pseudoobscura pseudoobscura GN=rept PE=3 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 3.332e-82
Identity = 146/230 (63.48%), Postives = 175/230 (76.09%), Query Frame = 3

Query:   99 LRGLGLHSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAISMGMAKSLGLETPFAMISGSKIFSLEMSKTEPLMQAFIKAIGVRIKXXXXXXXXXXXXXQIDRPATSGAAANTGKLTLKTTEMETVYDLGGKMIEALGKEKVHSGDVIAIDKVSGNITNLVRSFSRSKDYDAMGPHTKFVQCPDGELHNRIEVVHCVTLHEIDVINSTTQG 788
            +RGLGL   LEAR VS+GMVGQ  AR+AAGV++QM++EGKIAGR +L+AG+P TGKTAI++GMA++LG ETPF  +SGS+I+SLEMSKTE L QA  K+IGVRIK             QI+RPAT G     GK+TLKTTEMET YDLG K+IE   KEK+ +GDVI IDK SG +  L RSF+R++DYDA G  T+FVQCP+GEL  R EVVH VTLHEIDVINS T G
Sbjct:   24 IRGLGLDDVLEARAVSQGMVGQKDARRAAGVVVQMVREGKIAGRCILLAGEPSTGKTAIAVGMAQALGTETPFTSMSGSEIYSLEMSKTEALSQALRKSIGVRIKEETEIIEGEVVEIQIERPAT-GTGQKVGKVTLKTTEMETNYDLGNKIIECFMKEKIQAGDVITIDKASGKVNKLGRSFTRARDYDATGAQTRFVQCPEGELQKRKEVVHTVTLHEIDVINSRTHG 252

HSP 2 Score: 35.4242 bits (80), Expect = 3.332e-82
Identity = 16/24 (66.67%), Postives = 19/24 (79.17%), Query Frame = 2

Query:   29 MAELKLSESQDLTRIERIGAHSHI 100
            M E +  E +D+TRIERIGAHSHI
Sbjct:    1 MTEAEKIEVRDITRIERIGAHSHI 24

HSP 3 Score: 29.6462 bits (65), Expect = 3.332e-82
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 1

Query:  787 GFLALFTGDTGEIR 828
            GFLALF+GDTGEI+
Sbjct:  252 GFLALFSGDTGEIK 265

[Close]

BLAST of FC878343 vs. ExPASy Swiss-Prot
Match: RUVB2_DROME (RuvB-like helicase 2 OS=Drosophila melanogaster GN=rept PE=1 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 3.332e-82
Identity = 146/230 (63.48%), Postives = 175/230 (76.09%), Query Frame = 3

Query:   99 LRGLGLHSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAISMGMAKSLGLETPFAMISGSKIFSLEMSKTEPLMQAFIKAIGVRIKXXXXXXXXXXXXXQIDRPATSGAAANTGKLTLKTTEMETVYDLGGKMIEALGKEKVHSGDVIAIDKVSGNITNLVRSFSRSKDYDAMGPHTKFVQCPDGELHNRIEVVHCVTLHEIDVINSTTQG 788
            +RGLGL   LEAR VS+GMVGQ  AR+AAGV++QM++EGKIAGR +L+AG+P TGKTAI++GMA++LG ETPF  +SGS+I+SLEMSKTE L QA  K+IGVRIK             QI+RPA SG     GK+TLKTTEMET YDLG K+IE   KEK+ +GDVI IDK SG +  L RSF+R++DYDA G  T+FVQCP+GEL  R EVVH VTLHEIDVINS T G
Sbjct:   24 IRGLGLDDVLEARLVSQGMVGQKDARRAAGVVVQMVREGKIAGRCILLAGEPSTGKTAIAVGMAQALGTETPFTSMSGSEIYSLEMSKTEALSQALRKSIGVRIKEETEIIEGEVVEIQIERPA-SGTGQKVGKVTLKTTEMETNYDLGNKIIECFMKEKIQAGDVITIDKASGKVNKLGRSFTRARDYDATGAQTRFVQCPEGELQKRKEVVHTVTLHEIDVINSRTHG 252

HSP 2 Score: 36.5798 bits (83), Expect = 3.332e-82
Identity = 17/24 (70.83%), Postives = 20/24 (83.33%), Query Frame = 2

Query:   29 MAELKLSESQDLTRIERIGAHSHI 100
            MAE +  E +D+TRIERIGAHSHI
Sbjct:    1 MAETEKIEVRDVTRIERIGAHSHI 24

HSP 3 Score: 29.6462 bits (65), Expect = 3.332e-82
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 1

Query:  787 GFLALFTGDTGEIR 828
            GFLALF+GDTGEI+
Sbjct:  252 GFLALFSGDTGEIK 265

[Close]

BLAST of FC878343 vs. ExPASy Swiss-Prot
Match: RUVB2_AEDAE (RuvB-like helicase 2 OS=Aedes aegypti GN=rept PE=3 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.123e-81
Identity = 142/230 (61.74%), Postives = 176/230 (76.52%), Query Frame = 3

Query:   99 LRGLGLHSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAISMGMAKSLGLETPFAMISGSKIFSLEMSKTEPLMQAFIKAIGVRIKXXXXXXXXXXXXXQIDRPATSGAAANTGKLTLKTTEMETVYDLGGKMIEALGKEKVHSGDVIAIDKVSGNITNLVRSFSRSKDYDAMGPHTKFVQCPDGELHNRIEVVHCVTLHEIDVINSTTQG 788
            +RGLGL   LEAR VS+GMVGQ  AR+AAG+++Q+++EGKIAGR +L+AG+P TGKTAI++GMA++LG ETPF  +SGS+I+SLEM+KTE L QA  K+IGVRIK             QIDRPA SG     GK+T+KTT+MET YDLG K+IE   KEK+ +GDVI IDK SG ++ L RSF+R++DYDA G  T+FVQCP+GEL  R EVVH VTLHEIDVINS T G
Sbjct:   24 IRGLGLDDVLEARAVSQGMVGQKDARRAAGLVVQIVREGKIAGRCILLAGEPSTGKTAIAVGMAQALGNETPFTSMSGSEIYSLEMNKTEALSQALRKSIGVRIKEETEIIEGEVVEIQIDRPA-SGTGQKVGKVTIKTTDMETNYDLGNKIIECFMKEKIQAGDVITIDKASGKVSKLGRSFTRARDYDATGAQTRFVQCPEGELQKRKEVVHTVTLHEIDVINSRTHG 252

HSP 2 Score: 38.1206 bits (87), Expect = 2.123e-81
Identity = 18/24 (75.00%), Postives = 20/24 (83.33%), Query Frame = 2

Query:   29 MAELKLSESQDLTRIERIGAHSHI 100
            MAEL   E +D+TRIERIGAHSHI
Sbjct:    1 MAELDKIEVRDITRIERIGAHSHI 24

HSP 3 Score: 29.261 bits (64), Expect = 2.123e-81
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 1

Query:  787 GFLALFTGDTGEIR 828
            GFLALF GDTGEI+
Sbjct:  252 GFLALFAGDTGEIK 265

[Close]

BLAST of FC878343 vs. ExPASy Swiss-Prot
Match: RUVB2_DICDI (RuvB-like helicase 2 OS=Dictyostelium discoideum GN=rvb2 PE=3 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 1.461e-79
Identity = 143/232 (61.64%), Postives = 175/232 (75.43%), Query Frame = 3

Query:   99 LRGLGLHSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAISMGMAKSLGLETPFAMISGSKIFSLEMSKTEPLMQAFIKAIGVRIKXXXXXXXXXXXXXQIDRPATSGAAANTGKLTLKTTEMETVYDLGGKMIEALGKEKVHSGDVIAIDKVSGNITNLVRSFSRSKDYDAMGPHTKFVQCPDGELHNRIEVVHCVTLHEIDVINSTTQGVF 794
            +RGLG+  SLE R++S+GMVGQ+ ARKAAG+ILQMIKEGKIAGRA+LI G+PGTGKTAI+MGMA+SLG +TPF  I+ S+IFSLEMSKTE L QAF ++IGVRIK             QIDRPAT G+ A  GKLTLKTT M+ +YDLG KMI++L KEKV +GD+I IDK +G IT L RS SR +D++  G    F++CP+GE+  R    H V+LHEIDVINS  QG F
Sbjct:   24 IRGLGIDDSLEPREISQGMVGQVGARKAAGLILQMIKEGKIAGRAILIGGEPGTGKTAIAMGMAQSLGEKTPFTAIAASEIFSLEMSKTEALTQAFRRSIGVRIKEETEVICGEVVDIQIDRPAT-GSGAKVGKLTLKTTSMDALYDLGAKMIDSLTKEKVQNGDIIRIDKGTGKITKLGRSLSRVRDHEISGSKVNFIECPEGEIQQRRTETHTVSLHEIDVINSRAQGFF 254

HSP 2 Score: 36.965 bits (84), Expect = 1.461e-79
Identity = 16/20 (80.00%), Postives = 19/20 (95.00%), Query Frame = 2

Query:   41 KLSESQDLTRIERIGAHSHI 100
            K+S+ +DLTRIERIGAHSHI
Sbjct:    5 KISQVKDLTRIERIGAHSHI 24

HSP 3 Score: 26.1794 bits (56), Expect = 1.461e-79
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 1

Query:  784 RGFLALFTGDTGEIRA 831
            +GF ALF GD GEI++
Sbjct:  251 QGFFALFAGDIGEIKS 266

[Close]

BLAST of FC878343 vs. ExPASy Swiss-Prot
Match: RUVB2_USTMA (RuvB-like helicase 2 OS=Ustilago maydis GN=RVB2 PE=3 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 1.903e-79
Identity = 144/230 (62.61%), Postives = 179/230 (77.83%), Query Frame = 3

Query:   99 LRGLGLHSSLEARDVSEGMVGQLPARKAAGVILQMIKEGKIAGRAVLIAGQPGTGKTAISMGMAKSLGLETPFAMISGSKIFSLEMSKTEPLMQAFIKAIGVRIKXXXXXXXXXXXXXQIDRPATSGAAANTGKLTLKTTEMETVYDLGGKMIEALGKEKVHSGDVIAIDKVSGNITNLVRSFSRSKDYDAMGPHTKFVQCPDGELHNRIEVVHCVTLHEIDVINSTTQG 788
            ++GLGL   LE R  S+GMVGQ  ARKAAG+I++M+++G+IAGRA+L+ G P TGKTAI+MGMA++LG + PF M+S S++FSLEMSKTE LMQAF ++IGVRI+             QIDR  T   A  TGKLT+KTT+MET+Y+LG KMI++L KEKV +GDVIAIDK SG IT L RSF+R++DYDAMG  TKFVQCP+GEL  R +VVH V+LHEIDVINS TQG
Sbjct:   24 VKGLGLDDQLEPRPSSQGMVGQRAARKAAGLIVKMVQDGRIAGRAILMVGPPSTGKTAIAMGMAQTLGSDVPFTMLSASEVFSLEMSKTEALMQAFRRSIGVRIREEAEVVEGEVVEIQIDRSLTG--ATKTGKLTIKTTDMETIYELGNKMIDSLQKEKVTAGDVIAIDKASGRITKLGRSFTRARDYDAMGSDTKFVQCPEGELQRRKDVVHTVSLHEIDVINSRTQG 251

HSP 2 Score: 30.0314 bits (66), Expect = 1.903e-79
Identity = 12/15 (80.00%), Postives = 15/15 (100.00%), Query Frame = 1

Query:  784 RGFLALFTGDTGEIR 828
            +GFLALF+GDTGEI+
Sbjct:  250 QGFLALFSGDTGEIK 264

HSP 3 Score: 28.1054 bits (61), Expect = 1.903e-79
Identity = 10/24 (41.67%), Postives = 16/24 (66.67%), Query Frame = 2

Query:   29 MAELKLSESQDLTRIERIGAHSHI 100
            MA++  +    +  +ERIGAHSH+
Sbjct:    1 MAQISTTSEHTIQTLERIGAHSHV 24

The following BLAST results are available for this feature:

BLAST of FC878343 vs. ExPASy Swiss-Prot

BLAST of FC878343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47


Match Name	E-value	Identity	Description
RUVB2_XENLA	3.620e-91	70.87	RuvB-like 2 OS=Xenopus laevis GN=ruvbl2 PE=2 SV=1	[more]
RUVB2_MOUSE	3.259e-89	69.13	RuvB-like 2 OS=Mus musculus GN=Ruvbl2 PE=2 SV=3	[more]
RUVB2_HUMAN	3.259e-89	69.13	RuvB-like 2 OS=Homo sapiens GN=RUVBL2 PE=1 SV=3	[more]
RUVB2_BOVIN	3.259e-89	69.13	RuvB-like 2 OS=Bos taurus GN=RUVBL2 PE=2 SV=3	[more]
RUVB2_DANRE	7.210e-89	68.70	RuvB-like 2 OS=Danio rerio GN=ruvbl2 PE=1 SV=1	[more]
RUVB2_DROPS	3.332e-82	63.48	RuvB-like helicase 2 OS=Drosophila pseudoobscura p...	[more]
RUVB2_DROME	3.332e-82	63.48	RuvB-like helicase 2 OS=Drosophila melanogaster GN...	[more]
RUVB2_AEDAE	2.123e-81	61.74	RuvB-like helicase 2 OS=Aedes aegypti GN=rept PE=3...	[more]
RUVB2_DICDI	1.461e-79	61.64	RuvB-like helicase 2 OS=Dictyostelium discoideum G...	[more]
RUVB2_USTMA	1.903e-79	62.61	RuvB-like helicase 2 OS=Ustilago maydis GN=RVB2 PE...	[more]

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Properties


Property Name	Value
Genbank description	IC0AAA46AA09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA46AA09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC878343 ID=FC878343; Name=FC878343; organism=Citrus clementina; type=EST; length=832bp
ACTCTATCAAACCACAACCATCACCAGAATGGCGGAGCTAAAGCTATCGG
AAAGCCAAGACCTAACCCGAATCGAGCGCATAGGTGCACACTCCCATATT
GCGTGGTCTTGGTCTACACTCATCCCTAGAAGCGCGCGATGTCTCTGAAG
GCATGGTGGGTCAGCTCCCCGCCCGTAAGGCCGCCGGCGTCATACTCCAA
ATGATCAAAGAAGGAAAAATCGCGGGTCGGGCCGTCCTCATTGCGGGGCA
ACCCGGTACTGGTAAAACCGCCATATCAATGGGCATGGCTAAGTCTCTCG
GCCTTGAAACTCCCTTTGCCATGATCTCCGGCTCCAAAATTTTCTCCCTC
GAAATGTCCAAAACCGAACCCCTAATGCAAGCATTTATAAAGGCTATTGG
CGTGAGAATCAAAGAATAAGCCGAAGTTATTGAAGGAGAAGTTGTTGAGG
TGCAGATTGACCGCCCTGCAACATCTGGGGCGGCAGCGAACACAGGGAAG
CTGACACTGAAAACTACAGAGATGGAGACCGTTTATGACTTGGGTGGGAA
GATGATTGAAGCATTGGGTAAGGAGAAGGTGCATAGCGGAGATGTGATTG
CTATTGATAAGGTTTCGGGGAATATTACTAATCTTGTGAGGTCGTTTTCG
AGGTCTAAAGATTATGATGCGATGGGTCCTCATACTAAATTTGTTCAGTG
TCCTGACGGGGAGTTGCATAATCGGATAGAGGTTGTGCATTGTGTTACTC
TTCACGAGATTGATGTGATCAACAGCACAACACAGGGGGTTTTTGGCGCT
CTTCACTGGTGATACTGGTGAGATCCGTGCTG