FC878345

Overview
NameFC878345
Unique NameFC878345
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length881
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13768 contig Ccv1_Contig13768:64..944. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878345 vs. ExPASy Swiss-Prot
Match: SAT5_ARATH (Serine acetyltransferase 5 OS=Arabidopsis thaliana GN=SAT5 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.563e-26
Identity = 68/146 (46.58%), Postives = 79/146 (54.11%), Query Frame = 1
Query:   76 PAGELRYPSPAR---------------NLTMETHAAGDDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVSFSHCLLNYKGFLACQ 468
            PAGELR+ SP++               +  +   AA  + A +W QIKAEARRDAE+EPALASYLYSTILSHSSLERS++FHLGNKLC                                        C+SFSHCLLNYKGFLA Q
Sbjct:    3 PAGELRHQSPSKEKLSSVTQSDEAEAASAAISAAAADAEAAGLWTQIKAEARRDAEAEPALASYLYSTILSHSSLERSISFHLGNKLCSSTLLSTLLYDLFLNTFSSDPSLRNATVADLRAARVRDPACISFSHCLLNYKGFLAIQ 148          
BLAST of FC878345 vs. ExPASy Swiss-Prot
Match: SAT1_ORYSJ (Probable serine acetyltransferase 1 OS=Oryza sativa subsp. japonica GN=SAT1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.355e-24
Identity = 57/110 (51.82%), Postives = 65/110 (59.09%), Query Frame = 1
Query:  145 DEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVSFSHCLLNYKGFLACQVQ 474
            DE+WVW+QIKAEARRDA++EPALAS+LY+T+LSH SL+RSLAFHL NKLC                                        CV FSHCLLNYKGFLA Q Q
Sbjct:   37 DESWVWSQIKAEARRDADAEPALASFLYATVLSHPSLDRSLAFHLANKLCSSTLLSTLLYDLFVASLAAHPTLRAAVVADLLAARSRDPACVGFSHCLLNYKGFLAIQAQ 146          
BLAST of FC878345 vs. ExPASy Swiss-Prot
Match: SAT5_ORYSJ (Probable serine acetyltransferase 5 OS=Oryza sativa subsp. japonica GN=SAT5 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.023e-21
Identity = 52/109 (47.71%), Postives = 63/109 (57.80%), Query Frame = 1
Query:  142 DDEAWVWAQIKAEARRDAESEPALASYLYSTILSHSSLERSLAFHLGNKLCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVSFSHCLLNYKGFLACQ 468
            D+E+WVW+QIKAEARRDA++EPALAS+LY+T+LSH SL RS++FHL NKLC                                        CV FS CLLN+KGFLA Q
Sbjct:   68 DEESWVWSQIKAEARRDADAEPALASFLYATVLSHPSLPRSISFHLANKLCSSTLLSTLLYDLFLASFTAHPSLRAAVVADLLAARSRDPACVGFSQCLLNFKGFLAIQ 176          
The following BLAST results are available for this feature:
BLAST of FC878345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SAT5_ARATH3.563e-2646.58Serine acetyltransferase 5 OS=Arabidopsis thaliana... [more]
SAT1_ORYSJ4.355e-2451.82Probable serine acetyltransferase 1 OS=Oryza sativ... [more]
SAT5_ORYSJ2.023e-2147.71Probable serine acetyltransferase 5 OS=Oryza sativ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA58BH10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58BH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878345 ID=FC878345; Name=FC878345; organism=Citrus clementina; type=EST; length=881bp
ACTGTTTCGTGGTTTTAGATCCTCCGTTCTCGGAACAAGTGGGTAAGATT
GTTTTTTTACAAATAAAGAAAGATGCCGGCGGGCGAGCTCAGGTACCCAT
CTCCGGCGCGAAATTTAACGATGGAAACACACGCCGCCGGAGACGACGAG
GCTTGGGTGTGGGCCCAGATAAAAGCCGAGGCACGCCGCGACGCCGAGTC
TGAGCCGGCTTTAGCCAGCTACCTCTACTCGACCATCCTCTCTCACTCTT
CCTTGGAGAGATCGCTGGCGTTTCATTTGGGAAACAAGCTCTGCTCCTCC
ACGCTTCTCTCCACTCTCTTGTACGATCTCTTTCTGGACACTTTCTCCTC
CGACCCCGCTCTCCGCGCCGCGGCCGTCGCCGATCTTCGCGCCGCCCGTG
TCCGTGACCCCGCTTGCGTTTCCTTCTCTCACTGCCTCCTCAATTACAAA
GGCTTCTTGGCTTGCCAGGTACAATTAAATAATCTTAGCTTCAACTTCTA
ATTTAATTCAATGATTAAAGTATTAGTTTTTTTTTTTTTTTGGCCCTTTT
GCCACATCTCACCTGTGTTGATTGATTTTATGGCGGCTAACTGCAATAGA
TGGATGACAGAAGCACTTCGGGTGCTTTATTTCTTTGTGCTTTTCTTAAA
AAATGCCTTTTCTAGGTTAATAAAAGATCTTCCAGTGCTTTTCAAAGAAG
CATTTGATTAGCTTCTTCTAAAAAATGCATTTTCTTTCTCTACAAGAACT
CTCATGACCGTACCCTAAACTCTGCGCAAATAAACTGAGTTTAGACTTTA
CGTAAACACATGCTCTGCAGTCGCTGTATACTGGTTGGTCCATTTTCCAT
CTTTAANGAAAATGAAGATGGCTAAGTGTTG
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