FC878347

Overview
NameFC878347
Unique NameFC878347
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8959 contig Ccv1_Contig8959:62..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC878347 vs. ExPASy Swiss-Prot
Match: ZDH22_ARATH (S-acyltransferase TIP1 OS=Arabidopsis thaliana GN=TIP1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.223e-35
Identity = 77/110 (70.00%), Postives = 83/110 (75.45%), Query Frame = 3 
Query:  405 VDEESLRNDVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALHLEC--GTWCNPSCLSFNFGRVHGLNAADMYGY 728
            ++EESL+NDVYTAAAYGDLEKL RLVECEG SVSEPD LGYYALQW+ALNNR A AQY+IEHGGDVNA DHTGQTALH     G       L     RV   +A DMYGY
Sbjct:   26 IEEESLKNDVYTAAAYGDLEKLHRLVECEGSSVSEPDALGYYALQWSALNNRVAVAQYLIEHGGDVNATDHTGQTALHWSAVRGAIQVAELLLQEGARV---DATDMYGY 132
[Close]
BLAST of FC878347 vs. ExPASy Swiss-Prot
Match: ZDHC2_ARATH (Probable S-acyltransferase At2g14255 OS=Arabidopsis thaliana GN=At2g14255 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.179e-19
Identity = 45/70 (64.29%), Postives = 54/70 (77.14%), Query Frame = 3 
Query:  429 DVYTAAAYGDLEKLQRLVECEGCSVSEPDGLGYYALQWAALNNRTAAAQYIIEHGGDVNAADHTGQTALH 638
            DV++A+AYGDL +L+  VE  G SVS PD  G+YALQWAALNN    AQYII+HGGDVN+AD+  QT LH
Sbjct:   27 DVFSASAYGDLHQLKHFVEHNGSSVSLPDDNGFYALQWAALNNSLHVAQYIIQHGGDVNSADNIQQTPLH 96

HSP 2 Score: 21.1718 bits (43), Expect = 6.179e-19
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 1 
Query:  640 WSAVRGAIQVA*ALTSGG 693
            W+AV+G+I VA  L   G
Sbjct:   97 WAAVKGSIDVADLLLQHG 114
The following BLAST results are available for this feature:
BLAST of FC878347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ZDH22_ARATH5.223e-3570.00S-acyltransferase TIP1 OS=Arabidopsis thaliana GN=... [more]
ZDHC2_ARATH6.179e-1964.29Probable S-acyltransferase At2g14255 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA91BA09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA91BA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878347 ID=FC878347; Name=FC878347; organism=Citrus clementina; type=EST; length=729bp
AACAACACAACGCGGACGGCCAAAGCACTTTTAACGACTCAACATCAACG
ACCCCCGTTACCATTTTGAATCCCCCGTCTCCTCCTCCTTCAAAAAACCC
TAACTTTTTTTCAATTCTCAATAAAGTCAACCCATACCACAGCTTGAATT
TAATAAAAAAAATCGAATCTTTACGATCTGGTTCTGTTATGTTGTATAAT
TAATAGACACCCAAATGCCGTAACAGCACTAGCGGCACGCACAGGGGGAG
TTTTTGCATTGGGGATTTTGATTGATCTTTCTGATTTGAATAAATAAAGA
TAAAAGTCGAAATGTCTTCGGAGATCGAGGTGGTCGAAGAGGTTGGCCAG
TCATCGCAGAATCATCATAACCACGATCAATCATCCCCGTCAAACGGTGT
CGTTGTGGACGAGGAGAGCCTGAGGAACGACGTGTATACGGCGGCTGCGT
ATGGGGATTTGGAGAAGTTACAGAGGTTGGTCGAGTGCGAAGGATGCTCC
GTTTCCGAGCCCGATGGGCTTGGCTACTACGCCCTGCAGTGGGCCGCGCT
TAACAATCGGACCGCTGCTGCTCAATACATTATCGAGCATGGTGGAGATG
TAAATGCTGCAGATCATACAGGCCAGACTGCGTTGCATTTGGAGTGCGGT
ACGTGGTGCAATCCAAGTTGCTTGAGCTTTAACTTCGGGAGGGTGCACGG
GTTAAATGCTGCTGATATGTATGGCTATC
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