FC878350

Overview
NameFC878350
Unique NameFC878350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length865
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2463 contig Ccv1_Contig2463:1..865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878350 vs. ExPASy Swiss-Prot
Match: LHTL2_ARATH (Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.591e-15
Identity = 52/192 (27.08%), Postives = 93/192 (48.44%), Query Frame = 2
Query:  290 EKKQTYPAAHSMAQPTQPDPFLEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN-GSLKLYEFIAMVTVVMIVLSQLQPFNSLRHINL 862
            EK Q+ P   +  +    D +L +    +A          +WW++ FH  TA+VG  +L+LPY    LGWG G T + +   +TFY+ + M ++  H    G+R  R+ EL     G     + V+  Q  +  GV I  ++  G+ L+ ++  L  +  +++   +I +   +  VL+ L  FNS+  ++L
Sbjct:    2 EKSQSSPTKDASTKQKNVDDWLPITSSRNA----------KWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMIMSWLITFYTLWQMVQM--HEMVPGKRFDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGKSLKKIHDLLCTDCKNIRTTYWIMIFASIHFVLAHLPNFNSISIVSL 181          
BLAST of FC878350 vs. ExPASy Swiss-Prot
Match: LHTL3_ARATH (Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.125e-15
Identity = 52/155 (33.55%), Postives = 78/155 (50.32%), Query Frame = 2
Query:  413 WWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL----QIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLQPFNSLRHINLV 865
            W+++ FH  TAIVG  +L LPY    LGWG G   L +   +T Y+++ M ++ +  E  G+R  R+ EL     G     Y V+ +Q  + T   I  ++  GE L    Q+   D Y    LK+  FI +      VLS L+ FNS+  ++LV
Sbjct:   38 WYYSAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTFWQMIEMHEMFE--GKRFDRYHELGQAAFGKKLGLYIVVPLQLLVETSACIVYMVTGGESLKKIHQLSVGD-YECRKLKVRHFILIFASSQFVLSLLKNFNSISGVSLV 189          
BLAST of FC878350 vs. ExPASy Swiss-Prot
Match: LHT1_ARATH (Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.045e-14
Identity = 51/155 (32.90%), Postives = 77/155 (49.68%), Query Frame = 2
Query:  410 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL----QIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLQPFNSLRHINL 862
            +WW++ FH  TA+VG  +L LPY    LGWG G   L +   +T Y+ + M ++  H    G+R  R+ EL     G     Y V+  Q  +  GV I  ++  G+ L    +++  D  P   +KL  FI +   V  VLS L  FNS+  ++L
Sbjct:   37 KWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGPGIAVLVLSWVITLYTLWQMVEM--HEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEIGVCIVYMVTGGKSLKKFHELVCDDCKP---IKLTYFIMIFASVHFVLSHLPNFNSISGVSL 186          
BLAST of FC878350 vs. ExPASy Swiss-Prot
Match: LHT2_ARATH (Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.155e-13
Identity = 46/152 (30.26%), Postives = 78/152 (51.32%), Query Frame = 2
Query:  410 EWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN-GSLKLYEFIAMVTVVMIVLSQLQPFNSLRHINL 862
            +WW++ FH  TA+VG  +L+LPY    LGWG G T + +   +T Y+ + M ++  H    G+R  R+ EL     G     + V+  Q  +  GV I  ++  G  L+ ++  + P+   ++   +I +   V  V+S L  FNS+  I+L
Sbjct:   32 KWWYSAFHNVTAMVGAGVLSLPYAMSNLGWGPGVTIMVMSWIITLYTLWQMVEM--HEIVPGKRLDRYHELGQHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGASLKKVHQLVCPDCKEIRTTFWIMIFASVHFVISHLPNFNSISIISL 181          
BLAST of FC878350 vs. ExPASy Swiss-Prot
Match: LHTL4_ARATH (Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.970e-13
Identity = 47/155 (30.32%), Postives = 78/155 (50.32%), Query Frame = 2
Query:  413 WWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPNG----SLKLYEFIAMVTVVMIVLSQLQPFNSLRHINLV 865
            W+++ FH  TAIVG  +L LPY    LGWG G   L +   +T Y+ + M ++ +  E  G+R  R+ EL     G     Y ++ +Q  +   V I  ++  G+ L+ ++     +G     L++  FI +      VLS L+ FNS+  ++LV
Sbjct:   36 WYYSAFHNVTAIVGAGVLGLPYAMSELGWGPGVVVLILSWVITLYTLWQMIEMHEMFE--GQRFDRYHELGQAAFGKKLGLYIIVPLQLLVEISVCIVYMVTGGKSLKNVHDLALGDGDKCTKLRIQHFILIFASSQFVLSLLKNFNSISGVSLV 188          
BLAST of FC878350 vs. ExPASy Swiss-Prot
Match: LHTL1_ARATH (Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.574e-13
Identity = 52/175 (29.71%), Postives = 81/175 (46.29%), Query Frame = 2
Query:  353 LEVCRDSDAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL----QIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLQPFNSLRHINLV 865
            LE  ++ D           +WW++ FH  TA+VG  +L LP+    LGWG G   L +   +T Y+ + M ++  H    G+R  R+ EL     G     Y ++  Q  +  GV I  ++  G+ L    +I   D  P   ++L  FI +      VLS L  FNS+  ++LV
Sbjct:   25 LERQKEIDDWLPITSSRNAKWWYSTFHNVTAMVGAGVLGLPFFMAQLGWGPGIAVLILSWIITLYTLWQMVEM--HEMVPGKRFDRYHELGQFAFGERLGLYIIVPQQIIVEVGVCIVYMVTGGQSLKKFHEIACQDCSP---IRLSFFIMIFASSHFVLSHLPNFNSISGVSLV 194          
BLAST of FC878350 vs. ExPASy Swiss-Prot
Match: LHTL5_ARATH (Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.845e-12
Identity = 44/155 (28.39%), Postives = 79/155 (50.97%), Query Frame = 2
Query:  404 KGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECLQIMYSDLYPN-GSLKLYEFIAMVTVVMIVLSQLQPFNSLRHINLV 865
            + +W+++ FH  TA+VG  +L LP+    LGWG G   + +   +TFYS + M ++  H    G+R  R+ EL  +  G    ++ V+  Q  +     I   +  G+ L+     L+PN   ++   +I     + +VLSQ   FNS++ ++L+
Sbjct:   36 EAKWYYSAFHNVTAMVGAGVLGLPFAMSQLGWGPGLVAIIMSWAITFYSLWQMVQL--HEAVPGKRLDRYPELGQEAFGPKLGYWIVMPQQLLVQIASDIVYNVTGGKSLKKFVELLFPNLEHIRQTYYILGFAALQLVLSQSPDFNSIKIVSLL 188          
BLAST of FC878350 vs. ExPASy Swiss-Prot
Match: LHTL8_ARATH (Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.153e-11
Identity = 49/168 (29.17%), Postives = 75/168 (44.64%), Query Frame = 2
Query:  374 DAGAAFVLESKGEWWHAGFHLTTAIVGPTILTLPYVFRGLGWGLGFTCLTVMGFVTFYSYYLMSKVLDHCEKAGRRHIRFRELAADVLGSGWMFYFVIFIQTAINTGVGIGAILLAGECL----QIMYSDLYPNGSLKLYEFIAMVTVVMIVLSQLQPFNSLRHINLV 865
            DA         G   +A FH   A VG   L LP  F  LGW  G   LT+      Y+ +++ ++  H    G+R+ R+ ELA    G     +  +F    ++ G     IL+ GE +    QI+   L  +  L   E+  + T + IVLSQL   NS+  ++L+
Sbjct:   85 DAWLPITESRNGNAHYAAFHNLNAGVGFQALVLPVAFAFLGWSWGILSLTIAYCWQLYTLWILVQL--HEAVPGKRYNRYVELAQAAFGERLGVWLALFPTVYLSAGTATALILIGGETMKLFFQIVCGPLCTSNPLTTVEWYLVFTSLCIVLSQLPNLNSIAGLSLI 250          
The following BLAST results are available for this feature:
BLAST of FC878350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
LHTL2_ARATH3.591e-1527.08Lysine histidine transporter-like 2 OS=Arabidopsis... [more]
LHTL3_ARATH6.125e-1533.55Lysine histidine transporter-like 3 OS=Arabidopsis... [more]
LHT1_ARATH1.045e-1432.90Lysine histidine transporter 1 OS=Arabidopsis thal... [more]
LHT2_ARATH1.155e-1330.26Lysine histidine transporter 2 OS=Arabidopsis thal... [more]
LHTL4_ARATH1.970e-1330.32Lysine histidine transporter-like 4 OS=Arabidopsis... [more]
LHTL1_ARATH2.574e-1329.71Lysine histidine transporter-like 1 OS=Arabidopsis... [more]
LHTL5_ARATH2.845e-1228.39Lysine histidine transporter-like 5 OS=Arabidopsis... [more]
LHTL8_ARATH9.153e-1129.17Lysine histidine transporter-like 8 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA12AH12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA12AH12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878350 ID=FC878350; Name=FC878350; organism=Citrus clementina; type=EST; length=865bp
TCAAACATCCAAGGGCAAACCGAGTCACAAAAATGTTACCAACAAGTTGT
TACGAAACACCTCTCGAAATCGATTTGCTTTCTTTTATCTGAACCCATCT
TTGAATTGCATTTTTTTTCTAAGTCTCTTTTTTTGCTGAAATATATATAA
ACAAAGAAACGAATCTGATGTGATCATTACATACGCGATTCCCTTCCCTT
CTTTTCGACGCCCCCGAGAATCTGGGTTTATATATTATTAATCCTCTCAT
TGTTTTTTTTTTAATCCTTTTTTCTTCTTGTCATGAACTGAAAAAAAACA
AACTTATCCAGCCGCCCACTCAATGGCTCAGCCTACTCAACCGGACCCCT
TCTTGGAGGTCTGCCGAGACTCCGATGCCGGCGCCGCCTTTGTTCTGGAG
TCAAAAGGGGAGTGGTGGCACGCGGGGTTTCATCTAACGACGGCGATAGT
GGGACCGACGATACTGACGCTGCCGTACGTGTTTCGGGGGCTAGGCTGGG
GCCTGGGATTTACATGCTTAACGGTGATGGGATTTGTCACCTTCTACTCT
TATTATCTAATGTCTAAGGTTCTAGACCACTGTGAGAAAGCTGGTCGTCG
CCACATCCGATTCCGCGAGCTTGCCGCCGACGTTTTAGGGTCCGGATGGA
TGTTTTATTTTGTAATATTTATTCAAACGGCGATCAACACTGGAGTAGGA
ATAGGAGCAATTTTACTTGCGGGAGAATGCCTACAGATAATGTATTCAGA
TCTTTATCCCAACGGGTCTTTGAAACTGTACGAGTTCATAGCAATGGTGA
CAGTGGTAATGATAGTTCTCTCTCAGCTTCAACCTTTCAACTCCCTCAGA
CACATCAACCTTGTC
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