FC878360

Overview
NameFC878360
Unique NameFC878360
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length863
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878360_ssr725 microsatellite FC878360_ssr725:725..736. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15271 contig Ccv1_Contig15271:118..980. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878360 vs. ExPASy Swiss-Prot
Match: THIK2_ARATH (3-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidopsis thaliana GN=PED1 PE=1 SV=2)

HSP 1 Score: 349.362 bits (895), Expect = 1.566e-95
Identity = 183/270 (67.78%), Postives = 206/270 (76.30%), Query Frame = 3
Query:   57 MEKAXXXXXXXXXXXXPSSSQTSDSPA-ISASICSAGEAAGYHRKPAFDDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTI 863
            MEKA            PSSS + +  A +SAS C AG++A Y R   + DDVVIVAA+RT +CK+KRG FKDT  DDLLAPVL+A+IEKT LNPSEVGDIVVGTVLAPGS RA ECRMAAFYAGFPETV +RTVNRQCSSGLQAVADVA AIKAG YDIGI AGLESMT N ++  G VNP V+ F QA++CLLPMG+TSENVAQRFGV+RQEQD                GKFKDEIIPV TK+VDPKTG EK +T+SVDDGIRP TT+
Sbjct:    1 MEKAIERQRVLLEHLRPSSSSSHNYEASLSASACLAGDSAAYQRTSLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTL 270          
BLAST of FC878360 vs. ExPASy Swiss-Prot
Match: THIK1_ARATH (3-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidopsis thaliana GN=KAT1 PE=1 SV=2)

HSP 1 Score: 329.717 bits (844), Expect = 1.284e-89
Identity = 177/269 (65.80%), Postives = 197/269 (73.23%), Query Frame = 3
Query:   57 MEKAXXXXXXXXXXXXPSSSQTSDSPAISASICSAGEAAGYHRKPAFDDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTI 863
            MEKA            PSSS  +   ++SAS C + ++A Y     + DDVVIVAA RTA+CKAKRG FKDT  D+LLA VL+A+IEKT +NPSEVGDIVVGTVL PGS RA ECRMAAFYAGFPETVP+RTVNRQCSSGLQAVADVA AIKAG YDIGI AGLESMT N     G VNP V+ F QA +CLLPMGITSENVA RF V+R+EQD                GKFKDEI PV TKIVDPKTG EK +T+SVDDGIRPNTT+
Sbjct:    1 MEKATERQRILLRHLQPSSSSDA---SLSASACLSKDSAAYQ----YGDDVVIVAAQRTALCKAKRGSFKDTFPDELLASVLRALIEKTNVNPSEVGDIVVGTVLGPGSQRASECRMAAFYAGFPETVPIRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTTNPRGWKGSVNPNVKKFEQAHNCLLPMGITSENVAHRFNVSREEQDQAAVDSHRKAASATASGKFKDEITPVKTKIVDPKTGDEKPITVSVDDGIRPNTTL 262          
BLAST of FC878360 vs. ExPASy Swiss-Prot
Match: THIK5_ARATH (3-ketoacyl-CoA thiolase 5, peroxisomal OS=Arabidopsis thaliana GN=KAT5 PE=2 SV=2)

HSP 1 Score: 308.531 bits (789), Expect = 3.063e-83
Identity = 159/254 (62.60%), Postives = 194/254 (76.38%), Query Frame = 3
Query:  108 SSSQTSDSPAISASICSAGEAAGYHRKPAFDDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVG--QVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTI 863
            S+S     P++ + +    E +      AF DD+VIVAAYRTAICKA+RGGFKDTL DDLLA VLKAV+E+T L+PSEVGDIVVGTV+APGS RAMECR+AA++AGFP++VP+RTVNRQCSSGLQAVADVA +I+AG YDIGI AG+ESM+ + I   G    NP+ + F +ARDCLLPMGITSENVA+RFGVTR+EQD+               GK KDEIIPV TKIVDP+T  EK + +SVDDG+RPN+ +
Sbjct:   21 SNSSLKHEPSLLSPVNCVSEVSPM---AAFGDDIVIVAAYRTAICKARRGGFKDTLPDDLLASVLKAVVERTSLDPSEVGDIVVGTVIAPGSQRAMECRVAAYFAGFPDSVPVRTVNRQCSSGLQAVADVAASIRAGYYDIGIGAGVESMSTDHIPGGGFHGSNPRAQDFPKARDCLLPMGITSENVAERFGVTREEQDMAAVESHKRAAAAIASGKLKDEIIPVATKIVDPETKAEKAIVVSVDDGVRPNSNM 271          
BLAST of FC878360 vs. ExPASy Swiss-Prot
Match: THIKB_RAT (3-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus norvegicus GN=Acaa1b PE=2 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 4.169e-56
Identity = 121/251 (48.21%), Postives = 164/251 (65.34%), Query Frame = 3
Query:  111 SSQTSDSPAISASICSAGEAAGYHRKPAFDDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTI 863
            + ++  S A+ A+ CSAG         A   DVV+V   RT I +A RGGFKDT  D+LL+ VL AV++  +L P  +GDI VG VL PG+  AM  R+A F +G PETVPL  VNRQCSSGLQAVA++A  I+ G YDIG+A G+ESMT++     G ++ ++    +ARDCL+PMGITSENVA+RFG++RQ+QD                G F+ EI+PV T ++D K G  K +T+S D+G+RP+TT+
Sbjct:   12 AGRSESSSALQAAPCSAGFPQ------ASASDVVVVHGRRTPIGRAGRGGFKDTTPDELLSAVLTAVLQDVKLKPECLGDISVGNVLQPGAGAAM-ARIAQFLSGIPETVPLSAVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMTLSERGNPGNISSRLLENEKARDCLIPMGITSENVAERFGISRQKQDAFALASQQKAASAQSKGCFRAEIVPVTTTVLDDK-GDRKTITVSQDEGVRPSTTM 254          
BLAST of FC878360 vs. ExPASy Swiss-Prot
Match: THIKA_MOUSE (3-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musculus GN=Acaa1a PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.702e-55
Identity = 120/252 (47.62%), Postives = 166/252 (65.87%), Query Frame = 3
Query:  111 SSQTSDSPAISASICSAGEAAGYHRKP-AFDDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTI 863
            + +   S A+ A+ CSA       R P A   DVV+V   RT I +A RGGFK+T  D+LL+ VL AV++  RL P ++GDI VG VL PG+   M  R+A F +G PETVPL TVNRQCSSGLQAVA++A  I+ G YDIG+A G+ESM+++ +   G ++ ++    +ARDCL PMG+TSENVA+RFG++RQ+QD                G F+ EI+PV T ++D K G +K +T+S D+G+RP+TT+
Sbjct:   12 AGRPESSSALQAAPCSA-------RFPQASASDVVVVHGRRTPIGRASRGGFKNTTPDELLSAVLTAVLQDVRLKPEQLGDISVGNVLEPGAGAVM-ARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMSLSGMGNPGNISSRLLESEKARDCLTPMGMTSENVAERFGISRQKQDDFALASQQKAASAQSRGCFRAEIVPVTTTVLDDK-GDKKTITVSQDEGVRPSTTM 254          
BLAST of FC878360 vs. ExPASy Swiss-Prot
Match: THIKB_MOUSE (3-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musculus GN=Acaa1b PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.020e-55
Identity = 120/251 (47.81%), Postives = 163/251 (64.94%), Query Frame = 3
Query:  111 SSQTSDSPAISASICSAGEAAGYHRKPAFDDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTI 863
            + +   S A+ A+ CSAG         A   DVV+V   RT I +A RG FKDT  D+LL+ VL AV++  +L P ++GDI VG VL PG+   M  R+A F +G PETVPL TVNRQCSSGLQAVA++A  I+ G YDIG+A G+ESMT++     G ++ ++    +ARDCL+PMGITSENVA+RFGV+RQ+QD                G F  EI+PV T +++ K G +K +T+S D+G+RP+TT+
Sbjct:   12 AGRPESSSALQAAPCSAGFLQ------ASASDVVVVHGRRTPIGRASRGCFKDTTPDELLSAVLTAVLQDVKLKPEQLGDISVGNVLQPGAGAIM-ARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMTLSQRGNHGNISSRLLENEKARDCLIPMGITSENVAERFGVSRQKQDAFALASQQKAASAQSRGCFHAEIVPVTTTVLNDK-GDKKTITVSQDEGVRPSTTM 254          
BLAST of FC878360 vs. ExPASy Swiss-Prot
Match: THIKA_RAT (3-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus norvegicus GN=Acaa1a PE=2 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 2.987e-54
Identity = 118/251 (47.01%), Postives = 162/251 (64.54%), Query Frame = 3
Query:  111 SSQTSDSPAISASICSAGEAAGYHRKPAFDDDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTI 863
            + +   S A+ A+ CSA          A   DVV+V   RT I +A RGGFKDT  D+LL+ VL AV++  +L P  +GDI VG VL PG+   M  R+A F +G PETVPL  VNRQCSSGLQAVA++A  I+ G YDIG+A G+ESM++++    G ++ ++    +ARDCL+PMGITSENVA+RFG++RQ+QD                G F+ EI+PV T ++D K G  K +T+S D+G+RP+TT+
Sbjct:   12 AGRPESSSALQAAPCSATFPQ------ASASDVVVVHGRRTPIGRAGRGGFKDTTPDELLSAVLTAVLQDVKLKPECLGDISVGNVLEPGAGAVM-ARIAQFLSGIPETVPLSAVNRQCSSGLQAVANIAGGIRNGSYDIGMACGVESMSLSNRGNPGNISSRLLESDKARDCLIPMGITSENVAERFGISRQKQDAFALASQQKAASAQSKGCFRAEIVPVTTTVLDDK-GDRKTITVSQDEGVRPSTTM 254          
BLAST of FC878360 vs. ExPASy Swiss-Prot
Match: THIK_HUMAN (3-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapiens GN=ACAA1 PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 8.692e-54
Identity = 110/220 (50.00%), Postives = 149/220 (67.73%), Query Frame = 3
Query:  204 DVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVNSISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTI 863
            DVV+V   RTAIC+A RGGFKDT  D+LL+ V+ AV++   L P ++GDI VG VL PG+   M  R+A F +  PETVPL TVNRQCSSGLQAVA +A  I+ G YDIG+A G+ESM++      G +  ++    +ARDCL+PMGITSENVA+RFG++R++QD                G F+ EI+PV T + D K G ++ +T++ D+GIRP+TT+
Sbjct:   37 DVVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGAGAIM-ARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDCLIPMGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDK-GTKRSITVTQDEGIRPSTTM 254          
BLAST of FC878360 vs. ExPASy Swiss-Prot
Match: THIK_YARLI (3-ketoacyl-CoA thiolase, peroxisomal OS=Yarrowia lipolytica GN=POT1 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.486e-45
Identity = 103/221 (46.61%), Postives = 139/221 (62.90%), Query Frame = 3
Query:  201 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVLAPGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN-SISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTT 860
            DDVVI AAYRTA  K  +G FKDT + +LLA +L+ ++++++++P  +GD+V G VLA G+  A E R A   AG PETVP   +NRQCSSGL AV DVA  I+AG  DIGI  G+ESM+     + V   + K +   +A+ CL+PMGITSENVA ++ V+R+ QD                GKF  EI+P+ T ++D     EK VT++ DDGIRP  T
Sbjct:   28 DDVVITAAYRTAHTKGGKGLFKDTSSSELLASLLEGLVKESKIDPKLIGDVVCGNVLAAGAG-ATEHRAACLVAGIPETVPFVALNRQCSSGLMAVNDVANKIRAGQIDIGIGCGVESMSNQYGPNSVTPFSNKFQNNEEAKKCLIPMGITSENVAAKYNVSRKAQDAFAAKSYEKAAAAQAAGKFDQEILPIKTTVLDDDDN-EKEVTVNKDDGIRPGVT 246          
BLAST of FC878360 vs. ExPASy Swiss-Prot
Match: THIKB_CANTR (3-ketoacyl-CoA thiolase B, peroxisomal OS=Candida tropicalis PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.318e-37
Identity = 91/224 (40.62%), Postives = 127/224 (56.70%), Query Frame = 3
Query:  201 DDVVIVAAYRTAICKAKRGGFKDTLADDLLAPVLKAVIEKTRLNPSEVGDIVVGTVL--APGSTRAMECRMAAFYAGFPETVPLRTVNRQCSSGLQAVADVATAIKAGLYDIGIAAGLESMTVN--SISVVGQVNPKVEIFTQARDCLLPMGITSENVAQRFGVTRQEQDLXXXXXXXXXXXXXXXGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTT 860
            DDVVIVAAYRTAI K  +G F++  ++ +L   LK  I+KT ++PS + D+ +G VL  A G+T   E R A   AG P T     VNR CSSGL A++D+A  IK G  + G+A G ESM+ N     V  +++P +    Q   CL+PMGIT+ENVA +F ++R+ QD                G FK EI+P+ + I+    G EK + +  D+G R   T
Sbjct:   25 DDVVIVAAYRTAIGKGFKGSFRNVHSEFILTEFLKEFIKKTNIDPSLIEDVAIGNVLNQAAGAT---EHRGACLAAGIPYTAAFIAVNRFCSSGLMAISDIANKIKTGEIECGLAGGAESMSTNYRDPRVAPRIDPHLADDAQMEKCLIPMGITNENVANQFNISRERQDEFAAKSYNKAAKAVASGAFKSEILPIRS-IIRNSDGTEKEIIVDTDEGPREGVT 244          
The following BLAST results are available for this feature:
BLAST of FC878360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
THIK2_ARATH1.566e-9567.783-ketoacyl-CoA thiolase 2, peroxisomal OS=Arabidop... [more]
THIK1_ARATH1.284e-8965.803-ketoacyl-CoA thiolase 1, peroxisomal OS=Arabidop... [more]
THIK5_ARATH3.063e-8362.603-ketoacyl-CoA thiolase 5, peroxisomal OS=Arabidop... [more]
THIKB_RAT4.169e-5648.213-ketoacyl-CoA thiolase B, peroxisomal OS=Rattus n... [more]
THIKA_MOUSE2.702e-5547.623-ketoacyl-CoA thiolase A, peroxisomal OS=Mus musc... [more]
THIKB_MOUSE6.020e-5547.813-ketoacyl-CoA thiolase B, peroxisomal OS=Mus musc... [more]
THIKA_RAT2.987e-5447.013-ketoacyl-CoA thiolase A, peroxisomal OS=Rattus n... [more]
THIK_HUMAN8.692e-5450.003-ketoacyl-CoA thiolase, peroxisomal OS=Homo sapie... [more]
THIK_YARLI1.486e-4546.613-ketoacyl-CoA thiolase, peroxisomal OS=Yarrowia l... [more]
THIKB_CANTR3.318e-3740.633-ketoacyl-CoA thiolase B, peroxisomal OS=Candida ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA99CG01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA99CG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878360 ID=FC878360; Name=FC878360; organism=Citrus clementina; type=EST; length=863bp
CTGGTTCTCGATTCATCAGAACTCAAAAGCTTTCCATTGAAACCTGAGAG
TGAGAGATGGAGAAAGCTCTTCACAGACAGAGAATTCTGCTTCAACATCT
TCAACCTTCTTCTTCCCAAACCAGTGACTCGCCGGCTATTTCTGCTTCGA
TTTGTTCGGCTGGTGAAGCTGCAGGATACCATAGGAAGCCTGCTTTCGAT
GATGATGTCGTAATTGTGGCTGCATACCGTACTGCAATTTGCAAGGCGAA
ACGTGGAGGCTTCAAGGATACTCTTGCCGATGATCTGCTTGCACCTGTTC
TAAAGGCAGTGATAGAGAAAACGAGGTTGAATCCCAGTGAAGTAGGGGAT
ATAGTTGTTGGTACAGTCTTGGCACCTGGCTCAACAAGAGCCATGGAGTG
TAGGATGGCAGCGTTCTATGCTGGTTTCCCTGAAACGGTGCCCCTCAGAA
CTGTCAACAGGCAGTGTTCATCTGGCTTGCAGGCGGTTGCTGATGTTGCA
ACAGCTATAAAAGCTGGATTGTATGACATTGGTATTGCTGCTGGATTGGA
AAGCATGACTGTGAATTCTATTAGCGTTGTTGGCCAAGTTAACCCCAAAG
TGGAGATCTTTACTCAAGCTCGGGACTGTCTGCTTCCTATGGGTATCACT
TCTGAAAATGTTGCACAGAGATTTGGTGTGACACGACAAGAGCAAGACCT
GGCTGCCGTTGAATCTCATAGGCGTGCTGCTGCTGCAACTGCATCTGGCA
AGTTTAAAGATGAAATTATTCCAGTGAATACCAAGATTGTGGACCCAAAA
ACTGGAGTGGAGAAGCGTGTCACAATTTCTGTGGATGATGGAATTCGACC
AAACACAACAATT
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