FC878363

Overview
NameFC878363
Unique NameFC878363
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878363_ssr57 microsatellite FC878363_ssr57:57..68. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12473 contig Ccv1_Contig12473:136..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878363 vs. ExPASy Swiss-Prot
Match: AMT31_ORYSJ (Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 2.497e-101
Identity = 175/211 (82.94%), Postives = 188/211 (89.10%), Query Frame = 3
Query:  117 AVPDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGS-----VETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHGGVMDYSGGYVIHLSSGIAGFTAAYWVGPR 734
            AVP+WLNKGDNAWQMISATLVG+QSVPGLVILYGSIVKKKWAVNSAFMALYAFAAV +CW TW Y MSFG KLLPFWGKA PALGQ FL+ Q+ LP+TTQF+  G      VET  V P YPMA+MV+FQCVFAAITL++LAGS+LGRMNIKAWM FVPLWLTFSYTVGAFSLWGGGFLFH GVMDYSGGYVIHLSSG+AGFTAAYWVGPR
Sbjct:   18 AVPEWLNKGDNAWQMISATLVGMQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVWLCWVTWGYNMSFGHKLLPFWGKARPALGQSFLLAQAVLPQTTQFYKGGGGADAVVETPWVNPLYPMATMVYFQCVFAAITLILLAGSLLGRMNIKAWMLFVPLWLTFSYTVGAFSLWGGGFLFHWGVMDYSGGYVIHLSSGVAGFTAAYWVGPR 228          
BLAST of FC878363 vs. ExPASy Swiss-Prot
Match: AMT32_ORYSJ (Ammonium transporter 3 member 2 OS=Oryza sativa subsp. japonica GN=AMT3-2 PE=2 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 2.584e-98
Identity = 165/213 (77.46%), Postives = 188/213 (88.26%), Query Frame = 3
Query:   96 YQGGTSAAVPDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHGGVMDYSGGYVIHLSSGIAGFTAAYWVGPR 734
            YQG TSA+V DWLNKGDNAWQ+++AT+VGLQSVPGLV+LYG +VKKKWAVNSAFMALYAFAAV ICW TWAY MSFG+KLLP WGKA PAL Q  L+ ++ALP T  +  DGSVETA V P YPMA++V+FQCVFAAITL+++AGS+LGRM+  AWM FVPLWLTFSYTVGAFSLWGGGFLFH GV+DY GGYVIH+S+GIAGFTAAYWVGPR
Sbjct:   12 YQGNTSASVADWLNKGDNAWQLVAATVVGLQSVPGLVVLYGGVVKKKWAVNSAFMALYAFAAVWICWVTWAYNMSFGEKLLPIWGKARPALDQGLLVGRAALPATVHYRADGSVETAAVEPLYPMATVVYFQCVFAAITLILVAGSLLGRMSFLAWMIFVPLWLTFSYTVGAFSLWGGGFLFHWGVIDYCGGYVIHVSAGIAGFTAAYWVGPR 224          
BLAST of FC878363 vs. ExPASy Swiss-Prot
Match: AMT33_ORYSJ (Ammonium transporter 3 member 3 OS=Oryza sativa subsp. japonica GN=AMT3-3 PE=2 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 9.192e-96
Identity = 164/209 (78.47%), Postives = 183/209 (87.56%), Query Frame = 3
Query:  108 TSAAVPDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHGGVMDYSGGYVIHLSSGIAGFTAAYWVGPR 734
            T+ + PDWLNKGDNAWQM SATLVGLQS+PGLVILYGSIVKKKWA+NSAFMALYAFAAV ICW  WAY MSFGD+LLPFWGKA PALGQ FL+ QS L  T   + +GS E  M+ P YP+A+MV+FQC+FA+IT++ILAGS+LGRMNIKAWMAFVPLW+TFSYTV AFSLWGGGFLF  GV+DYSGGYVIHLSSGIAG TAAYWVGPR
Sbjct:   12 TTPSSPDWLNKGDNAWQMTSATLVGLQSMPGLVILYGSIVKKKWAINSAFMALYAFAAVWICWVVWAYNMSFGDRLLPFWGKARPALGQSFLVAQSELTATAIRYHNGSAEAPMLKPLYPVATMVYFQCMFASITIIILAGSLLGRMNIKAWMAFVPLWITFSYTVCAFSLWGGGFLFQWGVIDYSGGYVIHLSSGIAGLTAAYWVGPR 220          
BLAST of FC878363 vs. ExPASy Swiss-Prot
Match: AMT22_ORYSJ (Ammonium transporter 2 member 2 OS=Oryza sativa subsp. japonica GN=AMT2-2 PE=2 SV=2)

HSP 1 Score: 317.775 bits (813), Expect = 3.871e-86
Identity = 145/206 (70.39%), Postives = 174/206 (84.47%), Query Frame = 3
Query:  117 AVPDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHGGVMDYSGGYVIHLSSGIAGFTAAYWVGPR 734
            AVP WLNKGD AWQ+++AT VG+QS+PGLV++YGSIVKKKWAVNSAFMALYA+A+ +I W    ++M+FGD+LLPFW KAGPAL Q FL++++  P T  +  DG++ET    PFY  A++V F+  FAAITLV+LAGS+LGRMNIKAWMAF PLWL FSYTVGAFSLWGGGFL+  GV+DYSGGYVIHLSSG+AGFTAAYWVGPR
Sbjct:   20 AVPAWLNKGDTAWQLVAATFVGIQSMPGLVVIYGSIVKKKWAVNSAFMALYAYASTLIVWVLVGFRMAFGDRLLPFWAKAGPALTQDFLVQRAVFPATAHYGSDGTLETPRTEPFYAEAALVLFEFEFAAITLVLLAGSLLGRMNIKAWMAFTPLWLLFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHLSSGVAGFTAAYWVGPR 225          
BLAST of FC878363 vs. ExPASy Swiss-Prot
Match: AMT23_ORYSJ (Ammonium transporter 2 member 3 OS=Oryza sativa subsp. japonica GN=AMT2-3 PE=2 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.277e-85
Identity = 147/206 (71.36%), Postives = 173/206 (83.98%), Query Frame = 3
Query:  117 AVPDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHGGVMDYSGGYVIHLSSGIAGFTAAYWVGPR 734
            AVP+WLN GDN WQ+ +AT VGLQS+PGLV+LYGSIVKKKWAVNSAFMALYA+A+ +I W    ++M+FGD+LLPFWGKAG AL + FL+ ++++P T  +  DG++E+    PFYP ASMV FQ   AAITLV+LAGS+LGRMNIKAWMAF PLWL FSYTV AFSLWGGGFL+  GV+DYSGGYVIHLSSGIAGFTAAYWVGPR
Sbjct:   16 AVPEWLNTGDNGWQLAAATFVGLQSMPGLVVLYGSIVKKKWAVNSAFMALYAYASTLIVWVLVGFRMAFGDRLLPFWGKAGAALTEGFLVARASVPATAHYGKDGALESPRTEPFYPEASMVLFQFELAAITLVLLAGSLLGRMNIKAWMAFTPLWLLFSYTVCAFSLWGGGFLYQWGVIDYSGGYVIHLSSGIAGFTAAYWVGPR 221          
BLAST of FC878363 vs. ExPASy Swiss-Prot
Match: AMT2_ARATH (Ammonium transporter 2 OS=Arabidopsis thaliana GN=AMT2 PE=1 SV=2)

HSP 1 Score: 308.916 bits (790), Expect = 1.798e-83
Identity = 143/205 (69.76%), Postives = 170/205 (82.93%), Query Frame = 3
Query:  120 VPDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHGGVMDYSGGYVIHLSSGIAGFTAAYWVGPR 734
            VP+WLNKGDNAWQ+ +ATLVGLQS+PGLVILY SIVKKKWAVNSAFMALYAFAAV++CW    YKM+FG++LLPFWGK GPA  Q +L  Q+ +P +            +  P++PMA++V+FQ  FAAIT +++AGSVLGRMNIKAWMAFVPLWL FSYTVGA+S+WGGGFL+  GV+DYSGGYVIHLSSG+AGF AAYWVGPR
Sbjct:   12 VPEWLNKGDNAWQLTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAFAAVLLCWVLLCYKMAFGEELLPFWGKGGPAFDQGYLKGQAKIPNSN-----------VAAPYFPMATLVYFQFTFAAITTILVAGSVLGRMNIKAWMAFVPLWLIFSYTVGAYSIWGGGFLYQWGVIDYSGGYVIHLSSGVAGFVAAYWVGPR 205          
BLAST of FC878363 vs. ExPASy Swiss-Prot
Match: AMT21_ORYSJ (Ammonium transporter 2 member 1 OS=Oryza sativa subsp. japonica GN=AMT2-1 PE=2 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 8.924e-83
Identity = 147/206 (71.36%), Postives = 172/206 (83.50%), Query Frame = 3
Query:  117 AVPDWLNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHGGVMDYSGGYVIHLSSGIAGFTAAYWVGPR 734
            AVPDWLNKGDNAWQ+ ++TLVG+QS+PGLV+LYGSIVKKKWAVNSAFMALYA+A+ ++ W    ++M+FGD+LLPFWGKAG AL Q +L+ ++ LP T      G++      PFYP A++V FQ  FAAITLV+LAGSVLGRMNIKAWMAF PLWL  SYTVGAFSLWGGGFL+  GV+DYSGGYVIHLSSGIAGFTAAYWVGPR
Sbjct:   13 AVPDWLNKGDNAWQLTASTLVGIQSMPGLVVLYGSIVKKKWAVNSAFMALYAYASSLLVWVLVGFRMAFGDQLLPFWGKAGVALTQSYLVGRATLPATAH----GAIPRTE--PFYPEATLVLFQFEFAAITLVLLAGSVLGRMNIKAWMAFTPLWLLLSYTVGAFSLWGGGFLYRWGVIDYSGGYVIHLSSGIAGFTAAYWVGPR 212          
BLAST of FC878363 vs. ExPASy Swiss-Prot
Match: Y663_METTH (Putative ammonium transporter MTH_663 OS=Methanobacterium thermoautotrophicum GN=MTH_663 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.016e-34
Identity = 72/201 (35.82%), Postives = 110/201 (54.73%), Query Frame = 3
Query:  132 LNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHGGVMDYSGGYVIHLSSGIAGFTAAYWVGPR 734
            LN GD AW ++S  LV L +VPG+ + YG + KK+  +N+ F++L AFA   I W  + Y+ +FG  ++ F G                 P     +  G    A + P  P    + FQ  FAAIT+ +++G+V+ RM   AW+AF+ LW++  Y   A  +WGGGFL   G +D++GG V+H++SG+A     Y +G R
Sbjct:   10 LNSGDTAWMLVSTALVMLMTVPGVALFYGGLTKKENVLNTMFLSLIAFAVTSIIWVLYGYQFAFGADIMGFIGS----------------PVNLLMNGVGVNTAAALAPTIPDFLYIAFQLTFAAITVALISGAVVERMKFSAWLAFIVLWVSLVYVPVAHWVWGGGFLAQLGALDFAGGTVVHINSGVAALALVYLLGKR 194          
BLAST of FC878363 vs. ExPASy Swiss-Prot
Match: AMT_AQUAE (Ammonia channel OS=Aquifex aeolicus GN=amt PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.681e-29
Identity = 69/201 (34.33%), Postives = 106/201 (52.74%), Query Frame = 3
Query:  132 LNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHGGVMDYSGGYVIHLSSGIAGFTAAYWVGPR 734
            L+ G+ AW ++++ LV   +VPGL + YG + K K  +N+  M+  AFA V + W    Y +++GD +  F G     +  K +   ++        D G          YP    + FQ  FA IT  +++GS +GRM   AW+ F  LW  F Y   A  +WGGGFL + G +D++GG V+H+++GIAG   A  +G R
Sbjct:   25 LDTGNTAWMLVASALVVFMTVPGLALFYGGLDKSKSILNTIAMSFSAFAVVTLTWIFVGYSVAYGDDIFGFIGNPFQYVLGKGISGINS--------DTG----------YPALLDLMFQLTFATITTALISGSFVGRMKFSAWILFAILWSVFVYPPVAHWVWGGGFLANDGALDFAGGTVVHINAGIAGLVGALILGRR 207          
BLAST of FC878363 vs. ExPASy Swiss-Prot
Match: Y661_METTH (Putative ammonium transporter MTH_661 OS=Methanobacterium thermoautotrophicum GN=MTH_661 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.281e-28
Identity = 67/201 (33.33%), Postives = 103/201 (51.24%), Query Frame = 3
Query:  132 LNKGDNAWQMISATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVVICWATWAYKMSFGDKLLPFWGKAGPALGQKFLIKQSALPETTQFHDDGSVETAMVLPFYPMASMVWFQCVFAAITLVILAGSVLGRMNIKAWMAFVPLWLTFSYTVGAFSLWGGGFLFHGGVMDYSGGYVIHLSSGIAGFTAAYWVGPR 734
            LN GD AW +IS  LV L +VPG+ + Y  + K++  +N+ F++  +   V + W  + Y + FG  +    G     +G   +   SA               +   P  P      FQ  FAAIT+ +++G+V+ R+   +W+ F+PLW    Y   A  +WGGGFL + GV D++GG V+H++SGIA    A   GPR
Sbjct:    3 LNSGDTAWMLISTALVILMTVPGVAMFYSGLTKRENVLNTIFLSFVSLGIVSLLWFLFGYGLIFGGDVSGIIGSH--QVGISLINLGSA---------------SKYAPTIPEGLFAIFQMTFAAITVALISGAVVERIKFSSWILFIPLWFALVYVPVAHWVWGGGFLQNLGVHDFAGGIVVHITSGIAALALALVTGPR 186          
The following BLAST results are available for this feature:
BLAST of FC878363 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
AMT31_ORYSJ2.497e-10182.94Ammonium transporter 3 member 1 OS=Oryza sativa su... [more]
AMT32_ORYSJ2.584e-9877.46Ammonium transporter 3 member 2 OS=Oryza sativa su... [more]
AMT33_ORYSJ9.192e-9678.47Ammonium transporter 3 member 3 OS=Oryza sativa su... [more]
AMT22_ORYSJ3.871e-8670.39Ammonium transporter 2 member 2 OS=Oryza sativa su... [more]
AMT23_ORYSJ3.277e-8571.36Ammonium transporter 2 member 3 OS=Oryza sativa su... [more]
AMT2_ARATH1.798e-8369.76Ammonium transporter 2 OS=Arabidopsis thaliana GN=... [more]
AMT21_ORYSJ8.924e-8371.36Ammonium transporter 2 member 1 OS=Oryza sativa su... [more]
Y663_METTH2.016e-3435.82Putative ammonium transporter MTH_663 OS=Methanoba... [more]
AMT_AQUAE5.681e-2934.33Ammonia channel OS=Aquifex aeolicus GN=amt PE=1 SV... [more]
Y661_METTH6.281e-2833.33Putative ammonium transporter MTH_661 OS=Methanoba... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ7YA23RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ7YA23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878363 ID=FC878363; Name=FC878363; organism=Citrus clementina; type=EST; length=734bp
AAAAAGAGACAAAGTACAAGAGCAAGCAATAGTATATAATAAGTGCAATA
GCAATGGCTGCTGCTGCTGTTCCCCCGAACCCGGTCCCAATCGCCTACCA
AGGTGGCACCTCGGCAGCAGTACCGGACTGGCTAAACAAAGGCGACAACG
CATGGCAGATGATCTCAGCAACACTCGTGGGTCTCCAAAGCGTCCCGGGG
CTCGTGATCCTCTACGGCAGCATCGTCAAGAAGAAATGGGCAGTCAACTC
AGCTTTCATGGCCCTTTACGCCTTCGCGGCCGTCGTCATTTGTTGGGCCA
CCTGGGCTTACAAAATGTCCTTCGGTGACAAACTCTTGCCCTTCTGGGGC
AAAGCCGGACCTGCCTTGGGACAGAAGTTTCTCATCAAACAATCCGCCCT
CCCCGAGACTACGCAGTTCCACGACGACGGTTCCGTTGAAACGGCAATGG
TCTTGCCGTTTTATCCCATGGCTTCCATGGTTTGGTTCCAGTGCGTGTTT
GCTGCCATTACGTTGGTTATACTGGCCGGGTCCGTGCTGGGGAGAATGAA
TATTAAGGCTTGGATGGCGTTTGTGCCGCTTTGGCTTACGTTTTCGTACA
CGGTTGGGGCGTTCAGCCTGTGGGGTGGTGGTTTCTTGTTTCACGGGGGC
GTCATGGACTACTCCGGTGGCTACGTTATTCACCTCTCCTCTGGGATTGC
CGGCTTCACTGCCGCTTACTGGGTGGGGCCCAGA
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