FC878410

Overview
NameFC878410
Unique NameFC878410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length872
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC878410 vs. ExPASy Swiss-Prot
Match: SRS1_ORYSJ (Salt stress root protein RS1 OS=Oryza sativa subsp. japonica GN=Os01g0233000 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.786e-21
Identity = 60/128 (46.88%), Postives = 81/128 (63.28%), Query Frame = 1 
Query:    4 WKSKVLPRIKKVFEKNGTKKAAAAEACKSFDDSXXXXXXXXXXXXXXLQPKVVEIYEASSAEIKTLVKDRKEDG-LKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEKVSTFI 384
            WK+KVL  + K+F+K+G KKAAAAE  KSF+                L+PKVVE+ E+S  EIK L+KD+K    +KK+  AV K LEEL KI+FPG+K VS+A +K G   +   + FI EKV+ F+
Sbjct:    5 WKTKVLTGLNKLFDKDG-KKAAAAEFLKSFNKEEIGKEIDDKKTE--LEPKVVEVVESSPPEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAFILEKVAPFV 129
[Close]
BLAST of FC878410 vs. ExPASy Swiss-Prot
Match: SRS1_ORYSI (Salt stress root protein RS1 OS=Oryza sativa subsp. indica GN=OsI_001009 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.786e-21
Identity = 60/128 (46.88%), Postives = 81/128 (63.28%), Query Frame = 1 
Query:    4 WKSKVLPRIKKVFEKNGTKKAAAAEACKSFDDSXXXXXXXXXXXXXXLQPKVVEIYEASSAEIKTLVKDRKEDG-LKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEKVSTFI 384
            WK+KVL  + K+F+K+G KKAAAAE  KSF+                L+PKVVE+ E+S  EIK L+KD+K    +KK+  AV K LEEL KI+FPG+K VS+A +K G   +   + FI EKV+ F+
Sbjct:    5 WKTKVLTGLNKLFDKDG-KKAAAAEFLKSFNKEEIGKEIDDKKTE--LEPKVVEVVESSPPEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAFILEKVAPFV 129
The following BLAST results are available for this feature:
BLAST of FC878410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SRS1_ORYSJ5.786e-2146.88Salt stress root protein RS1 OS=Oryza sativa subsp... [more]
SRS1_ORYSI5.786e-2146.88Salt stress root protein RS1 OS=Oryza sativa subsp... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA60DB05RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DB05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878410 ID=FC878410; Name=FC878410; organism=Citrus clementina; type=EST; length=872bp
TACTGGAAATCCAAGGTCCTCCCAAGGATCAAGAAAGTTTTCGAGAAAAA
CGGAACCAAGAAAGCTGCTGCTGCTGAGGCTTGCAAGTCCTTTGATGATT
CAAAGGAAGAAATCAATAAAGAGTTTGAAGAGAAGAAGCCTGAGCTCCAA
CCTAAAGTGGTCGAAATCTATGAAGCTTCTTCAGCTGAAATCAAGACCCT
GGTCAAGGATCGCAAGGAGGATGGACTTAAGAAGCACTCCACTGCTGTGC
ACAAGTTACTTGAAGAACTCGTTAAAATCGAGTTTCCAGGATCAAAAGCA
GTAAGTGAAGCATCGTCAAAGTTTGGGGCAGCCTCTGTTCCGGGGCCAGT
TTTCTTCATATTTGAGAAGGTCTCAACGTTTATTGTTACTGAAGAAAAAG
CAGCAGAGCCAGCAACCGCGGCAGCAGGAGAAGAAACAAAACCAGAACAA
GAGACAACAAGTAGTAGTACCGCCGGCCCTGAGAAAACTGAGCCGGCAGA
AGCCGCCGCCGCCCCAGCCCCAACTGAGCCTCTTCCTGCCGCCGCCAAGG
AGGACCAACCAGCTGCTGCAGAGCCACCAAAGCCTTGAGAACATGCATCA
ACTGACAAGACAAATTCATATCCATATATACATAGATATATATTTCATAT
TCATCAAGTGAAAGTGAAGTAATAATGTTAATATTTTGTGTACGTAAAAG
TCTTGTAAAATGCAAAACATGATTTGTTATTCTTTCTTTTTCCTCTATAT
GCGCATGTATATCACCTACTTGTTTTTTTTTCCCTTGTATTATTTTGTTT
TACAGTCTTTATTTTTACTTTCTTTATTATTATTATTTTTTGTATTTGTG
AATTATTATTATTTGTAATATT
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