FC878414

Overview
NameFC878414
Unique NameFC878414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC878414 vs. ExPASy Swiss-Prot
Match: SYP24_ARATH (Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 9.977e-31
Identity = 70/145 (48.28%), Postives = 91/145 (62.76%), Query Frame = 2 
Query:  269 NKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVPLTPFYQGHKNTSYLNPVFEGQQILL--GGALRDYNKENNAGVFSIDVKLKLKVRFKLGKIKTPKFKPTIECDLKVP--LNSSN 691
            N VKF V DA LT F+L SNNNL Y L+LN++IRN    IG+HYDR EA VYY ++RL +VP+  FY G KNT  L  +FEGQ ++L  G   + +  +   GV+ IDVKL +  R  +  + T   KP + C LK+P  L SSN
Sbjct:    5 NDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRLGAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVMVLHLVTWPMKPVVRCHLKIPLALGSSN 149
The following BLAST results are available for this feature:
BLAST of FC878414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SYP24_ARATH9.977e-3148.28Putative syntaxin-24 OS=Arabidopsis thaliana GN=SY... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA100AE02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA100AE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878414 ID=FC878414; Name=FC878414; organism=Citrus clementina; type=EST; length=844bp
CTTCTTGCTTCCCAAAAAGTGCTCACAAATTATATAACTTCTCAAGCTTC
CTTCACTAGTCATCATGGCTGAACAACAAGCTCCTTTGAATGGAGCTTAT
TATGGTCCGGCGGTGCCACCGCCAACGAAGCACTACCACCGCCCTGGCCG
CGGCGGAGGCTGCGGCGGCTGCTGCTGCCTATTCACCCTTTTGATCAAAA
TCATCGTCTCCGCCGTGTTGATCCTTGGCCTCGCAGCCTTGATCGTATGG
CTCATATTCCGCCCCATCAACAAGGTCAAGTTCCACGTCACCGATGCCTC
TCTCACTGAATTCAACCTCACTTCCAACAACAACCTCAACTACAAGCTTG
CCCTTAACATCACCATCAGAAACCCTAACAAAAAGATCGGCGTACACTAC
GACCGCATCGAAGCTAGGGTTTACTACGACGACAAGAGGTTAACATCTGT
TCCTCTCACTCCATTTTATCAAGGACACAAAAACACCAGCTATTTGAACC
CCGTTTTCGAAGGGCAGCAGATTCTGCTTGGCGGTGCACTTAGAGACTAT
AATAAAGAGAATAATGCCGGAGTTTTTAGCATCGACGTGAAGCTTAAATT
GAAAGTTAGGTTCAAGTTGGGCAAAATCAAGACTCCAAAGTTCAAGCCCA
CGATCGAGTGTGATCTGAAGGTTCCTTTGAATTCTTCTAATGGCAGATTT
GCTGGCCGTCGTTTTGAAACTACTAAGTGCGATGTTGATTTCTAGTTAAT
TGATCATCATTGTTGATGATCATGATGATCTTATTCTCTTGTTTGATCGA
GTCTTCGTGTTTTTTTTTTTTTTTTCCTTTTTTGAGTTTATTAT
back to top