FC878430

Overview
NameFC878430
Unique NameFC878430
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length914
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878430 vs. ExPASy Swiss-Prot
Match: LYM1_ARATH (LysM domain-containing GPI-anchored protein 1 OS=Arabidopsis thaliana GN=At1g21880 PE=1 SV=1)

HSP 1 Score: 418.698 bits (1075), Expect = 2.311e-116
Identity = 198/255 (77.65%), Postives = 226/255 (88.63%), Query Frame = 1
Query:  130 TPKSTIEPCSNSDSCSALLGYTLYTDLKVSEVGSLFNVDPVSILTANAIDISYPDVENHILPSQLFLRIPVTCACVDGIRKSVSTHYKTRPSDTLTSISNQVYAGLVSADQLREANDIQDPDVLDVGDNLLVPLPCTCFNGTDNSLPAVYLSYVVKDVDTLAGIAARYRTTLTDLMNVNAMGSTAVKAGDILAVPLPACATNFPRYALDHGLIVPNGSYAITASHCVQCSCGPGNLNLYCMPASLAVSCSSMQCK 894
            T KSTIEPCS++D+C+ALLGYTLYTDLKVSEV SLF VDP+SIL ANAIDISYPDVENHILPS+LFL+IP+TC+CVDGIRKSVSTHYKTRPSD L SI++ VY GLVSA+Q++EAN + DP +LDVG +L++PLPC CFNGTDNSLPAVYLSYVVK++DTL GIA RY TT+TDLMNVNAMG+  V +GDILAVPL ACA+ FPRYA D GLIVPNGSYA+ A HCVQCSC  G+ NLYC PASLAVSCSSMQC+
Sbjct:   26 TAKSTIEPCSSNDTCNALLGYTLYTDLKVSEVASLFQVDPISILLANAIDISYPDVENHILPSKLFLKIPITCSCVDGIRKSVSTHYKTRPSDNLGSIADSVYGGLVSAEQIQEANSVNDPSLLDVGTSLVIPLPCACFNGTDNSLPAVYLSYVVKEIDTLVGIARRYSTTITDLMNVNAMGAPDVSSGDILAVPLSACASKFPRYASDFGLIVPNGSYALAAGHCVQCSCALGSRNLYCEPASLAVSCSSMQCR 280          
BLAST of FC878430 vs. ExPASy Swiss-Prot
Match: LYM3_ARATH (LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis thaliana GN=At1g77630 PE=1 SV=1)

HSP 1 Score: 382.489 bits (981), Expect = 1.835e-105
Identity = 176/257 (68.48%), Postives = 221/257 (85.99%), Query Frame = 1
Query:  124 LVTPKSTIEPCSNSDSCSALLGYTLYTDLKVSEVGSLFNVDPVSILTANAIDISYPDVENHILPSQLFLRIPVTCACVDGIRKSVSTHYKTRPSDTLTSISNQVYAGLVSADQLREANDIQDPDVLDVGDNLLVPLPCTCFNGTDNSLPAVYLSYVVKDVDTLAGIAARYRTTLTDLMNVNAMGSTAVKAGDILAVPLPACATNFPRYALDHGLIVPNGSYAITASHCVQCSCGPGNLNLYCMPASLAVSCSSMQCK 894
            + T KSTIEPCS+ D+C++LLGYTLYTDLKV+EV SLF VDPVS+L +N+IDISYPDVENH+LP++LFL+IP+TC+CVDGIRKS+STHYKTR SDTL SI++ VY GLVS +Q++ AN   D  VLDVG  L++PLPC CFNGTD SLPA+YLSYVV+ +DT+AGIA R+ T++TDL NVNAMG+  +  GDILAVPL AC++NFP+YA D+GLI+PNGSYA+TA HCVQCSC  G+ ++YC PAS++VSCSSM+C+
Sbjct:   21 MATAKSTIEPCSSKDTCNSLLGYTLYTDLKVTEVASLFQVDPVSMLLSNSIDISYPDVENHVLPAKLFLKIPITCSCVDGIRKSLSTHYKTRTSDTLGSIADSVYGGLVSPEQIQVANSETDLSVLDVGTKLVIPLPCACFNGTDESLPALYLSYVVRGIDTMAGIAKRFSTSVTDLTNVNAMGAPDINPGDILAVPLLACSSNFPKYATDYGLIIPNGSYALTAGHCVQCSCVLGSRSMYCEPASISVSCSSMRCR 277          
BLAST of FC878430 vs. ExPASy Swiss-Prot
Match: LYM2_ARATH (LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis thaliana GN=At2g17120 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.096e-28
Identity = 80/243 (32.92%), Postives = 138/243 (56.79%), Query Frame = 1
Query:  154 CSNSDS-CSALLGYTLYTDLKVSEVGSLFNVDPV-SILTANAIDISYPDVENHILPSQLFLRIPVTCACVDGIRKSV-STHYKTRPSDTLTSISNQVYAGLVSADQLREANDIQDPDVLDVGDNLLVPLPCTC--FNGTDNSLPAVYLSYVVKDVDTLAGIAARYRTTLTDLMNVNA-MGSTAVKAGDILAVPLPACATNFPRYALDHGLIVPNGSYAITASHCVQCSCGP-GNLNLYCMPAS 861
            CS S S C +L+GY+      +  + +LF V  + SIL AN + ++    +  + P+Q+ +R+P+ C+C +G   S     Y  +  D L+ ++ +++ GLV+ +++ E N I DP+ +++G    +PLPC+C   NG D     V+ ++VVK   +L  IAA++ T  T L  +N  +G + + A   L VPL AC+++  + +LD  L++ N SY  TA++CV+C+C    N  L C  +S
Sbjct:   31 CSGSTSTCQSLVGYSSKNATTLRNIQTLFAVKNLRSILGANNLPLN-TSRDQRVNPNQV-VRVPIHCSCSNGTGVSNRDIEYTIKKDDILSFVATEIFGGLVTYEKISEVNKIPDPNKIEIGQKFWIPLPCSCDKLNGED----VVHYAHVVKLGSSLGEIAAQFGTDNTTLAQLNGIIGDSQLLADKPLDVPLKACSSSVRKDSLDAPLLLSNNSYVFTANNCVKCTCDALKNWTLSCQSSS 267          
BLAST of FC878430 vs. ExPASy Swiss-Prot
Match: CEBIP_ORYSJ (Chitin elicitor-binding protein OS=Oryza sativa subsp. japonica GN=CEBIP PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.488e-22
Identity = 72/241 (29.88%), Postives = 122/241 (50.62%), Query Frame = 1
Query:  169 SCSALLGYT-----LYTDLKVSEVGSL---FNVDPV-SILTANAIDISYPD--VENHILPSQLFLRIPVTCACVDGIRKSVSTH-YKTRPSDTLTSISNQVYAGLVSADQLREANDIQDPDVLDVGDNLLVPLPCTCFNGTDNSLPAVYLSYVVKDVDTLAGIAARYRTTLTDLMNVNAMGS-TAVKAGDILAVPLPACATNFPRYALDHGL-IVPNGSYAITASHCVQCSCGPGNLNLYC 849
            +C+   G T     LYT    +  G+L   FN   +  +L AN +    PD  + +  + +   ++IP  C C   + +S     Y  +P D L +I+  V+   V+  ++  AN+I DP+ ++V   L +PLPC+C    +     ++L+Y V   +  + IAA+Y  T + L+  N +   T ++ G IL VPLP C ++    + DH L ++P+G+Y  TA +C++CSC      L C
Sbjct:   32 TCAVASGTTCKSAILYTSPNATTYGNLVARFNTTTLPDLLGANGL----PDGTLSSAPVAANSTVKIPFRCRCNGDVGQSDRLPIYVVQPQDGLDAIARNVFNAFVTYQEIAAANNIPDPNKINVSQTLWIPLPCSC--DKEEGSNVMHLAYSVGKGENTSAIAAKYGVTESTLLTRNKIDDPTKLQMGQILDVPLPVCRSSISDTSADHNLMLLPDGTYGFTAGNCIRCSCSSTTYQLNC 266          
The following BLAST results are available for this feature:
BLAST of FC878430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
LYM1_ARATH2.311e-11677.65LysM domain-containing GPI-anchored protein 1 OS=A... [more]
LYM3_ARATH1.835e-10568.48LysM domain-containing GPI-anchored protein 2 OS=A... [more]
LYM2_ARATH3.096e-2832.92LysM domain-containing GPI-anchored protein 2 OS=A... [more]
CEBIP_ORYSJ1.488e-2229.88Chitin elicitor-binding protein OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA60DB09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DB09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878430 ID=FC878430; Name=FC878430; organism=Citrus clementina; type=EST; length=914bp
CAAAACTTTCCCCTTCCCTCCTTACACACTCCAAAACCCTAACCTGAAGT
TAACAACAACTCACCAACAATGCCCAAAACCCTACTCTATCTCCTGCTCC
TCTTCAGCAATGCAGCAATGGTACTGGTGACGCCCAAGTCAACAATCGAG
CCCTGCTCCAATTCCGACTCCTGCAGCGCATTGCTCGGCTACACTCTTTA
CACCGACCTCAAAGTCTCCGAAGTGGGCTCCCTCTTCAACGTCGACCCCG
TCTCCATCCTCACCGCCAACGCCATCGACATTTCCTACCCGGACGTGGAG
AACCACATCCTCCCTTCTCAGCTCTTTCTCAGGATCCCCGTCACCTGCGC
CTGCGTCGACGGGATTCGCAAGTCCGTTTCCACCCACTACAAGACTCGCC
CTTCGGACACGCTTACCTCGATTTCGAACCAGGTCTACGCGGGTTTGGTC
TCTGCTGATCAGTTGAGGGAGGCTAATGATATACAGGACCCGGATGTTTT
GGACGTTGGGGATAATTTGCTTGTGCCGTTGCCTTGTACCTGTTTTAATG
GCACGGATAATTCGTTGCCGGCTGTTTACTTGAGTTATGTTGTGAAAGAT
GTGGACACGCTTGCGGGAATTGCGGCTAGGTATAGGACTACGCTTACTGA
TTTGATGAATGTTAATGCTATGGGAAGTACTGCTGTCAAGGCTGGTGATA
TTCTTGCTGTTCCATTGCCAGCCTGTGCAACTAATTTTCCTAGATATGCT
TTGGATCATGGATTGATTGTACCAAATGGGAGCTACGCAATCACAGCAAG
CCACTGTGTGCAATGCAGTTGTGGGCCAGGGAATCTCAATTTGTACTGCA
TGCCTGCTTCATTGGCAGTTTCTTGCTCAAGCATGCAATGTAAAAAATAG
TAACTTCATGCTTG
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