FC878430
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878430 vs. ExPASy Swiss-Prot
Match: LYM1_ARATH (LysM domain-containing GPI-anchored protein 1 OS=Arabidopsis thaliana GN=At1g21880 PE=1 SV=1) HSP 1 Score: 418.698 bits (1075), Expect = 2.311e-116 Identity = 198/255 (77.65%), Postives = 226/255 (88.63%), Query Frame = 1 Query: 130 TPKSTIEPCSNSDSCSALLGYTLYTDLKVSEVGSLFNVDPVSILTANAIDISYPDVENHILPSQLFLRIPVTCACVDGIRKSVSTHYKTRPSDTLTSISNQVYAGLVSADQLREANDIQDPDVLDVGDNLLVPLPCTCFNGTDNSLPAVYLSYVVKDVDTLAGIAARYRTTLTDLMNVNAMGSTAVKAGDILAVPLPACATNFPRYALDHGLIVPNGSYAITASHCVQCSCGPGNLNLYCMPASLAVSCSSMQCK 894 T KSTIEPCS++D+C+ALLGYTLYTDLKVSEV SLF VDP+SIL ANAIDISYPDVENHILPS+LFL+IP+TC+CVDGIRKSVSTHYKTRPSD L SI++ VY GLVSA+Q++EAN + DP +LDVG +L++PLPC CFNGTDNSLPAVYLSYVVK++DTL GIA RY TT+TDLMNVNAMG+ V +GDILAVPL ACA+ FPRYA D GLIVPNGSYA+ A HCVQCSC G+ NLYC PASLAVSCSSMQC+ Sbjct: 26 TAKSTIEPCSSNDTCNALLGYTLYTDLKVSEVASLFQVDPISILLANAIDISYPDVENHILPSKLFLKIPITCSCVDGIRKSVSTHYKTRPSDNLGSIADSVYGGLVSAEQIQEANSVNDPSLLDVGTSLVIPLPCACFNGTDNSLPAVYLSYVVKEIDTLVGIARRYSTTITDLMNVNAMGAPDVSSGDILAVPLSACASKFPRYASDFGLIVPNGSYALAAGHCVQCSCALGSRNLYCEPASLAVSCSSMQCR 280
BLAST of FC878430 vs. ExPASy Swiss-Prot
Match: LYM3_ARATH (LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis thaliana GN=At1g77630 PE=1 SV=1) HSP 1 Score: 382.489 bits (981), Expect = 1.835e-105 Identity = 176/257 (68.48%), Postives = 221/257 (85.99%), Query Frame = 1 Query: 124 LVTPKSTIEPCSNSDSCSALLGYTLYTDLKVSEVGSLFNVDPVSILTANAIDISYPDVENHILPSQLFLRIPVTCACVDGIRKSVSTHYKTRPSDTLTSISNQVYAGLVSADQLREANDIQDPDVLDVGDNLLVPLPCTCFNGTDNSLPAVYLSYVVKDVDTLAGIAARYRTTLTDLMNVNAMGSTAVKAGDILAVPLPACATNFPRYALDHGLIVPNGSYAITASHCVQCSCGPGNLNLYCMPASLAVSCSSMQCK 894 + T KSTIEPCS+ D+C++LLGYTLYTDLKV+EV SLF VDPVS+L +N+IDISYPDVENH+LP++LFL+IP+TC+CVDGIRKS+STHYKTR SDTL SI++ VY GLVS +Q++ AN D VLDVG L++PLPC CFNGTD SLPA+YLSYVV+ +DT+AGIA R+ T++TDL NVNAMG+ + GDILAVPL AC++NFP+YA D+GLI+PNGSYA+TA HCVQCSC G+ ++YC PAS++VSCSSM+C+ Sbjct: 21 MATAKSTIEPCSSKDTCNSLLGYTLYTDLKVTEVASLFQVDPVSMLLSNSIDISYPDVENHVLPAKLFLKIPITCSCVDGIRKSLSTHYKTRTSDTLGSIADSVYGGLVSPEQIQVANSETDLSVLDVGTKLVIPLPCACFNGTDESLPALYLSYVVRGIDTMAGIAKRFSTSVTDLTNVNAMGAPDINPGDILAVPLLACSSNFPKYATDYGLIIPNGSYALTAGHCVQCSCVLGSRSMYCEPASISVSCSSMRCR 277
BLAST of FC878430 vs. ExPASy Swiss-Prot
Match: LYM2_ARATH (LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis thaliana GN=At2g17120 PE=1 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 3.096e-28 Identity = 80/243 (32.92%), Postives = 138/243 (56.79%), Query Frame = 1 Query: 154 CSNSDS-CSALLGYTLYTDLKVSEVGSLFNVDPV-SILTANAIDISYPDVENHILPSQLFLRIPVTCACVDGIRKSV-STHYKTRPSDTLTSISNQVYAGLVSADQLREANDIQDPDVLDVGDNLLVPLPCTC--FNGTDNSLPAVYLSYVVKDVDTLAGIAARYRTTLTDLMNVNA-MGSTAVKAGDILAVPLPACATNFPRYALDHGLIVPNGSYAITASHCVQCSCGP-GNLNLYCMPAS 861 CS S S C +L+GY+ + + +LF V + SIL AN + ++ + + P+Q+ +R+P+ C+C +G S Y + D L+ ++ +++ GLV+ +++ E N I DP+ +++G +PLPC+C NG D V+ ++VVK +L IAA++ T T L +N +G + + A L VPL AC+++ + +LD L++ N SY TA++CV+C+C N L C +S Sbjct: 31 CSGSTSTCQSLVGYSSKNATTLRNIQTLFAVKNLRSILGANNLPLN-TSRDQRVNPNQV-VRVPIHCSCSNGTGVSNRDIEYTIKKDDILSFVATEIFGGLVTYEKISEVNKIPDPNKIEIGQKFWIPLPCSCDKLNGED----VVHYAHVVKLGSSLGEIAAQFGTDNTTLAQLNGIIGDSQLLADKPLDVPLKACSSSVRKDSLDAPLLLSNNSYVFTANNCVKCTCDALKNWTLSCQSSS 267
BLAST of FC878430 vs. ExPASy Swiss-Prot
Match: CEBIP_ORYSJ (Chitin elicitor-binding protein OS=Oryza sativa subsp. japonica GN=CEBIP PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.488e-22 Identity = 72/241 (29.88%), Postives = 122/241 (50.62%), Query Frame = 1 Query: 169 SCSALLGYT-----LYTDLKVSEVGSL---FNVDPV-SILTANAIDISYPD--VENHILPSQLFLRIPVTCACVDGIRKSVSTH-YKTRPSDTLTSISNQVYAGLVSADQLREANDIQDPDVLDVGDNLLVPLPCTCFNGTDNSLPAVYLSYVVKDVDTLAGIAARYRTTLTDLMNVNAMGS-TAVKAGDILAVPLPACATNFPRYALDHGL-IVPNGSYAITASHCVQCSCGPGNLNLYC 849 +C+ G T LYT + G+L FN + +L AN + PD + + + + ++IP C C + +S Y +P D L +I+ V+ V+ ++ AN+I DP+ ++V L +PLPC+C + ++L+Y V + + IAA+Y T + L+ N + T ++ G IL VPLP C ++ + DH L ++P+G+Y TA +C++CSC L C Sbjct: 32 TCAVASGTTCKSAILYTSPNATTYGNLVARFNTTTLPDLLGANGL----PDGTLSSAPVAANSTVKIPFRCRCNGDVGQSDRLPIYVVQPQDGLDAIARNVFNAFVTYQEIAAANNIPDPNKINVSQTLWIPLPCSC--DKEEGSNVMHLAYSVGKGENTSAIAAKYGVTESTLLTRNKIDDPTKLQMGQILDVPLPVCRSSISDTSADHNLMLLPDGTYGFTAGNCIRCSCSSTTYQLNC 266 The following BLAST results are available for this feature:
BLAST of FC878430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878430 ID=FC878430; Name=FC878430; organism=Citrus clementina; type=EST; length=914bpback to top |