FC878432

Overview
NameFC878432
Unique NameFC878432
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length880
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC878432 vs. ExPASy Swiss-Prot
Match: GID2_ARATH (F-box protein GID2 OS=Arabidopsis thaliana GN=GID2 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.638e-18
Identity = 46/86 (53.49%), Postives = 56/86 (65.12%), Query Frame = 3 
Query:  117 EEEQVKETSFTNLYENSLFEVLKHADTRTSXXXXXXXXXXXXDTQNEHLWKLICTHHFANVGCATQQLRSVVLALGGSRRLHSLYL 374
            EEE++    F+NL EN ++EVLKH D +T               Q+E LW+LICT H+ N+GC   QLRSVVLALGG RRLHSLYL
Sbjct:   26 EEEEI---GFSNLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYL 108
The following BLAST results are available for this feature:
BLAST of FC878432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GID2_ARATH4.638e-1853.49F-box protein GID2 OS=Arabidopsis thaliana GN=GID2... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA49BF08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878432 ID=FC878432; Name=FC878432; organism=Citrus clementina; type=EST; length=880bp
CAAAATAAAGTCATCCTAGTTTTACTTGATGAAGCGTATGGGTCTTGATT
CTTCGGTCACCACCGAAGACAACCAAAGGATGAAAAAAGTCAAACAAGTT
GAGGAAGAATAAGAAAGAGGAAGAGCAAGTCAAAGAAACTAGCTTCACAA
ATCTATATGAGAATTCCCTGTTCGAGGTGTTGAAACACGCGGACACCAGG
ACTTCGTTGCAGGCGGCCTTGCGTCAACAAGCTATGGCACAAGACACGCA
AAATGAGCACCTTTGGAAGTTAATTTGCACCCACCACTTCGCTAACGTTG
GGTGCGCTACCCAACAGCTCAGATCTGTTGTCCTGGCTCTCGGTGGCTCC
CGTCGCCTTCACTCCCTCTATCTCGGTGGCTCTCGTCGCTTTCTCTCTCT
GCCATTCTTTCTCTCACAGTCGAAACCAAAACTCAAATCCCTAACTCCCC
AGCCACAAAACCTCTCATTTGCCTCAAAACAAAACAAAATCAATCCGTTC
TCCTTCTCTCTGATTATTCGAAAGTTAGAAGCACCTTAAATAGTTCTCTC
TGAAAAGCCATTCACCCAAACCCTAACCTCACTAATAAAATTTTTATTAA
TAGTGATTTTTTCAATTAATTAAGATATGGGTTCATTGGCAGAGAAACAA
AGAGACTTCGCCCTGTTGTATCCACTTTGAGAAACTACTCATCTGCAACT
AAACAGGAAAATTCCAAGGGATTTGACAGAGGCATCACTATCTGGTGCAA
GATTATCCATAATAGCAGCCCTTTCTATGTTCTTTTTATTTGGAATGGAC
CTGATTTAAGACCCACTGGTTCTGAATTCCACTCAATGCTTGTTATACAT
TCGCTTAAGCATGGAGAGGAAGCTGATGAT
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