FC878434

Overview
NameFC878434
Unique NameFC878434
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length898
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878434 vs. ExPASy Swiss-Prot
Match: AOC4_ARATH (Allene oxide cyclase 4, chloroplastic OS=Arabidopsis thaliana GN=AOC4 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.292e-71
Identity = 141/254 (55.51%), Postives = 179/254 (70.47%), Query Frame = 2
Query:   95 MACSSAALRTISSASVKLANSTSPTKSSSIL-VPFKLNNPFLITQCPHLQAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVN-SLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 847
            M  +S+A  +IS  +++  +    +  S+ L      +N  + +  P L        +     F     ++S+D  RPTK+QEL+VYE NE DR SPA L+L +KP    LGDLVPF+NKLYTGDL KR+GITAGLC+LI++ PEKKGDR+EA YSFYFGDYGHI+VQGPYLTYEDT+LA+TGGSG+FEG YGQVKL+QLV+P KLFYTFYLKG+  DLP  L GK V+P   V+P+  A+A +PGA I NFTN
Sbjct:    1 MIMASSAAASISMITLRNLSRNHQSHQSTFLGFSRSFHNQRISSNSPGLSTRARSTTSSTGGFFRTICSSSSNDYSRPTKIQELNVYEFNEGDRNSPAVLKLGKKPDQLCLGDLVPFTNKLYTGDLTKRIGITAGLCVLIQHVPEKKGDRFEASYSFYFGDYGHISVQGPYLTYEDTFLAITGGSGVFEGAYGQVKLRQLVYPTKLFYTFYLKGVAADLPVELTGKHVEPSKEVKPAAEAQATQPGATIANFTN 254          
BLAST of FC878434 vs. ExPASy Swiss-Prot
Match: AOC2_ARATH (Allene oxide cyclase 2, chloroplastic OS=Arabidopsis thaliana GN=AOC2 PE=1 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.866e-70
Identity = 142/261 (54.41%), Postives = 181/261 (69.35%), Query Frame = 2
Query:   95 MACSSAALRTISSASVKLANSTSPTKSSSILVPFKLNNPFLITQCPHLQAATSCNFTVPKRSFTCR---------SQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 847
            MA S+ +L++IS  ++   +       SS+L   K      I+       +   +F+ P  SFT +         SQ  + ++PRP+KVQEL VYEINE DR SP  L+ +   +  LGDLVPF+NKLYTGDL+KR+GITAGLC++IE+ PEKKG+R+EA YSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG YGQVKLQQLV+P KLFYTFYLKG+  DLP  L G PV P   +EP+P AKA EP   I N+TN
Sbjct:    1 MASSAVSLQSISMTTLNNLSCNQQFHRSSLLGSSKSFQNLGIS-------SNGSDFSYPS-SFTAKKNLTASRALSQNGNIENPRPSKVQELSVYEINELDRHSPKILKNAFSLMFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELTGTPVPPSKDIEPAPEAKALEPSGVISNYTN 253          
BLAST of FC878434 vs. ExPASy Swiss-Prot
Match: AOC3_ARATH (Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 3.182e-70
Identity = 147/261 (56.32%), Postives = 183/261 (70.11%), Query Frame = 2
Query:   95 MACSSAALRTISSASVKLANSTSPTKSS--SILVPFK--LNNPFLITQCPHL----QAATSCNFTVPKRSFTCRSQANSSDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVN-SLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 847
            MA SSAA+ ++ S S+   N+ S    S  S L+ F     N  + +  P      ++ TS N  V +  F   +    +++ RP+K+QEL+VYE+NE DR SPA L+L +KP    LGDLVPF+NKLYTGDL+KR+GITAGLC+LI++ PEK GDR+EA YSFYFGDYGH++VQG YLTYEDT+LAVTGGSGIFEG YGQVKL+QLV+P KLFYTFYLKG+  DLP  L G  V P   V+P+P AKA EP   I NFTN
Sbjct:    1 MASSSAAM-SLESISMTTLNNLSRNHQSHRSSLLGFSRSFQNLGISSNGPDFSSRSRSTTSKNLNVTRAFFW--NWGKKTENSRPSKIQELNVYELNEGDRNSPAVLKLGKKPTELCLGDLVPFTNKLYTGDLKKRVGITAGLCVLIQHVPEKSGDRFEASYSFYFGDYGHLSVQGQYLTYEDTFLAVTGGSGIFEGAYGQVKLRQLVYPTKLFYTFYLKGLANDLPLELTGTAVTPSKDVKPAPEAKAMEPSGVISNFTN 258          
BLAST of FC878434 vs. ExPASy Swiss-Prot
Match: AOC1_ARATH (Allene oxide cyclase 1, chloroplastic OS=Arabidopsis thaliana GN=AOC1 PE=1 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 9.259e-70
Identity = 142/256 (55.47%), Postives = 183/256 (71.48%), Query Frame = 2
Query:   95 MACSSAALRTISSASVKLANSTSPTKSSSILVPFKLNNPFLITQC-PHLQAATSCNFTVPKRSFTCRSQANS---SDDPRPTKVQELHVYEINERDRGSPAYLRLSQKPVNSLGDLVPFSNKLYTGDLQKRLGITAGLCILIENKPEKKGDRYEAIYSFYFGDYGHIAVQGPYLTYEDTYLAVTGGSGIFEGVYGQVKLQQLVFPFKLFYTFYLKGI-KDLPEVLLGKPVDPHPGVEPSPAAKACEPGAAIDNFTN 847
            MA S+ +L++IS  ++   + +     SS+L   K    F I+   P   + TS  FT  K+    R+ + +   +++PRP+KVQEL VYEIN+ DR SP  L+ +      LGDLVPF+NKLYTGDL+KR+GITAGLC++IE+ PEK GDR+EA YSFYFGDYGH++VQGPYLTYED++LA+TGG+GIFEG YGQVKLQQLV+P KLFYTFYLKG+  DLP  L+G PV P   VEP+P AKA +P   + NFTN
Sbjct:    1 MASSTISLQSISMTTLNNLSYSKQFHRSSLLGFSKSFQNFGISSNGPGSSSPTS--FTPKKKLTPTRALSQNLGNTENPRPSKVQELSVYEINDLDRHSPKILKNAFSFRFGLGDLVPFTNKLYTGDLKKRVGITAGLCVVIEHVPEKNGDRFEATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYPTKLFYTFYLKGLANDLPLELIGTPVPPSKDVEPAPEAKALKPSGVVSNFTN 254          
The following BLAST results are available for this feature:
BLAST of FC878434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AOC4_ARATH1.292e-7155.51Allene oxide cyclase 4, chloroplastic OS=Arabidops... [more]
AOC2_ARATH1.866e-7054.41Allene oxide cyclase 2, chloroplastic OS=Arabidops... [more]
AOC3_ARATH3.182e-7056.32Allene oxide cyclase 3, chloroplastic OS=Arabidops... [more]
AOC1_ARATH9.259e-7055.47Allene oxide cyclase 1, chloroplastic OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ5YP01RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YP01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878434 ID=FC878434; Name=FC878434; organism=Citrus clementina; type=EST; length=898bp
CATTTTCTCATCAGAAAATTCCCTCACTTTCTTTCCTCCCAAACAGTCAT
ACACTGATTTAACAACAGAAATTATCAACAAAAGATTATCCCCAATGGCT
TGTTCAAGCGCCGCTTTGAGAACCATCTCTTCTGCTTCTGTCAAGCTAGC
CAATTCAACATCACCAACCAAATCATCATCAATTTTAGTACCATTTAAGC
TGAATAATCCTTTTCTAATCACTCAATGCCCCCACCTTCAAGCCGCCACA
AGCTGCAACTTCACAGTACCCAAAAGATCTTTCACTTGCAGAAGCCAAGC
TAACTCATCAGATGATCCCAGACCCACCAAAGTTCAAGAACTTCATGTGT
ATGAGATCAACGAGCGAGATCGTGGCAGTCCAGCTTATCTTCGCTTGAGC
CAGAAACCTGTGAATTCACTTGGTGATCTTGTCCCTTTTAGCAACAAATT
ATATACTGGAGACCTGCAAAAGAGGTTGGGAATAACAGCGGGTTTATGCA
TTTTGATCGAAAACAAACCAGAAAAGAAAGGTGACCGATATGAAGCAATT
TACAGCTTCTACTTTGGAGACTATGGTCACATAGCTGTGCAAGGACCGTA
TTTGACCTATGAGGACACTTATCTGGCTGTGACTGGTGGATCCGGCATCT
TCGAGGGAGTGTATGGGCAGGTTAAGCTGCAGCAACTTGTGTTTCCATTT
AAGCTGTTTTACACATTTTATTTGAAGGGCATTAAGGACTTGCCAGAAGT
GCTTCTGGGGAAGCCGGTGGATCCGCACCCTGGTGTTGAGCCCTCCCCTG
CTGCTAAGGCTTGTGAGCCTGGTGCAGCCATTGACAATTTCACTAATTAG
TTAGGGATATGAGGACATCTTTAAATTGGTTGTTTTTTAATTCAGTGA
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