FC878437

Overview
NameFC878437
Unique NameFC878437
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length880
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878437 vs. ExPASy Swiss-Prot
Match: C86A2_ARATH (Cytochrome P450 86A2 OS=Arabidopsis thaliana GN=CYP86A2 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.065e-46
Identity = 97/232 (41.81%), Postives = 145/232 (62.50%), Query Frame = 1
Query:  196 GLPIWPFLGMLPSLISGLQGNMYEWMTDIIISQSGTFRF---KGPWLSSLN--CVVTSDPRNLEHLLKTKFPNFPKGHYFRDTVRDLLGDGIFNADDETWLRQRKTSSIEFHSAKFRQMTTESLFELVHSRLLPVLESSLNSSAAIDLQDVLLRLTFDNVCMIAFGADPGCLRVGLPEIPFAKAFEDATEATVLRFVTPTCVWKTMRFLDIGNEKKLKRSIKGVDEFADEVI 876
            G  +WP LG LP LI   +  M++W+T+ + +  GT++      P+L+       VT DP+N+EH+LKT+F N+PKG  ++    D LG GIFN+D +TWL QRKT+++EF +   RQ     +   +  R  P+LE++ N+   +DLQD++LRLTFDN+C +AFG D      GLPE  FA AF+ ATEA++ RF+ P  +W+  ++L +G E  L RS+  +D + D VI
Sbjct:   29 GPRVWPVLGSLPGLIEQ-RDRMHDWITENLRACGGTYQTCICAVPFLAKKQGLVTVTCDPKNIEHMLKTRFDNYPKGPTWQAVFHDFLGQGIFNSDGDTWLFQRKTAALEFTTRTLRQAMGRWVNRGIKLRFCPILETAQNNYEPVDLQDLILRLTFDNICGLAFGKDTRTCAPGLPENGFASAFDRATEASLQRFILPEFLWRLKKWLGLGLEVSLSRSLGEIDGYLDAVI 259          
BLAST of FC878437 vs. ExPASy Swiss-Prot
Match: C86A1_ARATH (Cytochrome P450 86A1 OS=Arabidopsis thaliana GN=CYP86A1 PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 9.971e-45
Identity = 93/249 (37.35%), Postives = 154/249 (61.85%), Query Frame = 1
Query:  145 ALFVFIAIHSLRKKKRYGLPIWPFLGMLPSLISGLQGNMYEWMTDIIISQSGTFR---FKGPWLSSLN--CVVTSDPRNLEHLLKTKFPNFPKGHYFRDTVRDLLGDGIFNADDETWLRQRKTSSIEFHSAKFRQMTTESLFELVHSRLLPVLESSLNSSAAIDLQDVLLRLTFDNVCMIAFGADPGCLRVGLPEIPFAKAFEDATEATVLRFVTPTCVWKTMRFLDIGNEKKLKRSIKGVDEFADEVI 876
            AL V+        ++  G  + PF+G LP LI+  +  +++W+ D + +  GT++      P+++       VT  P+N+EH+LKT+F N+PKG  +R    DLLG GIFN+D +TWL QRKT+++EF +   RQ     +   + +RL  +L+ ++ ++  +DLQD+ LRLTFDN+C + FG DP  L + LP+ PF+ AF+ ATEAT+ R +    +W+  + + IG+E KLK+S++ V+ + ++ I
Sbjct:   15 ALSVYALWFYFLSRRLTGPKVLPFVGSLPYLIAN-RSRIHDWIADNLRATGGTYQTCTMVIPFVAKAQGFYTVTCHPKNVEHILKTRFDNYPKGPMWRAAFHDLLGQGIFNSDGDTWLMQRKTAALEFTTRTLRQAMARWVNGTIKNRLWLILDRAVQNNKPVDLQDLFLRLTFDNICGLTFGKDPETLSLDLPDNPFSVAFDTATEATLKRLLYTGFLWRIQKAMGIGSEDKLKKSLEVVETYMNDAI 262          
BLAST of FC878437 vs. ExPASy Swiss-Prot
Match: C94A2_VICSA (Cytochrome P450 94A2 OS=Vicia sativa GN=CYP94A2 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.068e-38
Identity = 89/225 (39.56%), Postives = 134/225 (59.56%), Query Frame = 1
Query:  208 WPFLGMLPSLISGLQGNMYEWMTDIIIS-QSGTFRFKGPWLSSLNCVVTSDPRNLEHLLKTKFPNFPKGHYFRDTVRDLLGDGIFNADDETWLRQRKTSSIEFHSAKFRQMTTESLFELVHSRLLPVLESSLNSSAAIDLQDVLLRLTFDNVCMIAFGADPGCLRVGLPEIPFAKAFEDATEATVLRF-VTPTCVWKTMRFLDIGNEKKLKRSIKGVDEFADEVI 876
            +P  G   SL++     + +W +DI+ +  S TF    P+      V T+ P  ++H+L+T F  + KG  F  ++ D LGDGIFNAD E+W  QR+ SS EF++   R+     +   +  RL+PVL  + NS   +D QD+L RLTFDN+CMIAFG DP  L   LPEIPFAKAF+++++ ++ R       +WK  RFL+IG E++LK ++  V   A +++
Sbjct:   46 YPIFGSAFSLLANFHRRI-QWTSDILQTIPSSTFVLHRPF--GARQVFTAQPAVVQHILRTNFTCYGKGLTFYQSINDFLGDGIFNADGESWKFQRQISSHEFNTRSLRKFVETVVDVELSDRLVPVLSQASNSQTTLDFQDILQRLTFDNICMIAFGYDPEYLLPSLPEIPFAKAFDESSQLSIERLNALIPLLWKVKRFLNIGVERQLKEAVAEVRGLATKIV 267          
BLAST of FC878437 vs. ExPASy Swiss-Prot
Match: C94A1_VICSA (Cytochrome P450 94A1 OS=Vicia sativa GN=CYP94A1 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 9.994e-37
Identity = 83/225 (36.89%), Postives = 130/225 (57.78%), Query Frame = 1
Query:  208 WPFLGMLPSLISGLQGNMYEWMTDII-ISQSGTFRFKGPWLSSLNCVVTSDPRNLEHLLKTKFPNFPKGHYFRDTVRDLLGDGIFNADDETWLRQRKTSSIEFHSAKFRQMTTESLFELVHSRLLPVLESSLNSSAAIDLQDVLLRLTFDNVCMIAFGADPGCLRVGLPEIPFAKAFEDATEATVLRFVTP-TCVWKTMRFLDIGNEKKLKRSIKGVDEFADEVI 876
            +P +G   S    L   + +W++DI+ IS S TF+  G        ++T +P  ++H+LK +F N+ KG  F +T+ D LG GIFN +   W  QR+ +S EF++   R      +   + +RL+P+L SS  ++  +D QD+L R TFDN+C IAFG DP  L        FA+A+EDATE +  RF  P   +WK  ++ +IG+EK+LK ++  V  FA +++
Sbjct:   51 YPLIGSYLSFRKNLHRRI-QWLSDIVQISPSATFQLDGTL--GKRQIITGNPSTVQHILKNQFSNYQKGTTFTNTLSDFLGTGIFNTNGPNWKFQRQVASHEFNTKSIRNFVEHIVDTELTNRLIPILTSSTQTNNILDFQDILQRFTFDNICNIAFGYDPEYLTPSTNRSKFAEAYEDATEISSKRFRLPLPIIWKIKKYFNIGSEKRLKEAVTEVRSFAKKLV 272          
BLAST of FC878437 vs. ExPASy Swiss-Prot
Match: C04C1_PINTA (Cytochrome P450 704C1 OS=Pinus taeda GN=CYP704C1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.002e-28
Identity = 83/260 (31.92%), Postives = 135/260 (51.92%), Query Frame = 1
Query:  115 LDVQILELFLALFVFIAIHSLRKKKRYGLPIWPFLGMLPSLISGLQGNM--YEWMTDIIISQSGTFRFKGPWLSSLNCVVTSDPRNLEHLLKTKFPNFPKGHYFRDTVRDLLGDGIFNADDETWLRQRKTSSIEFHSAKFRQMTTESLFELVHSRLLPVLESSLNSSAAIDLQDVLLRLTFDNVCMIAFGADPGCLRVGL----PEIPFAKAFEDATEATVLRFVTPTCVWKTMRFLDIGNEKKLKRSIKGVDEFADEVI 876
            +DV IL +F+ +       SL       L  W   G+ P ++  +  +   +E + D    Q+  ++       + + V T+DP N+EH+LKT F N+ KG +  D ++DLLGDGIFN D + W +QRK +S EF S   +  ++  +F    ++L  +L  +   + ++++QD+ +R + D++C + FG D   L        PE  FAKAF D   A V         WK  RF ++G+E  L+ +IK VD+F  +VI
Sbjct:    1 MDVNILTMFVTVSALALACSLWIASY--LRNWRKKGVYPPVVGTMLNHAINFERLHDYHTDQAQRYKTFRVVYPTCSYVFTTDPVNVEHILKTNFANYDKGTFNYDIMKDLLGDGIFNVDGDKWRQQRKLASSEFASKVLKDFSS-GVFCNNAAKLANILAQAAKLNLSVEMQDLFMRSSLDSICKVVFGIDINSLSSSKAESGPEASFAKAF-DVANAMVFHRHMVGSFWKVQRFFNVGSEAILRDNIKMVDDFLYKVI 256          
The following BLAST results are available for this feature:
BLAST of FC878437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
C86A2_ARATH1.065e-4641.81Cytochrome P450 86A2 OS=Arabidopsis thaliana GN=CY... [more]
C86A1_ARATH9.971e-4537.35Cytochrome P450 86A1 OS=Arabidopsis thaliana GN=CY... [more]
C94A2_VICSA1.068e-3839.56Cytochrome P450 94A2 OS=Vicia sativa GN=CYP94A2 PE... [more]
C94A1_VICSA9.994e-3736.89Cytochrome P450 94A1 OS=Vicia sativa GN=CYP94A1 PE... [more]
C04C1_PINTA1.002e-2831.92Cytochrome P450 704C1 OS=Pinus taeda GN=CYP704C1 P... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA49BF09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878437 ID=FC878437; Name=FC878437; organism=Citrus clementina; type=EST; length=880bp
TGCATTTCCTATCAACCAAACACCATGATCAGCCCTAGCTCTAATCTCAC
TTCCCTCTCCTCCTCCGATCACAAACTCGCCGGAAACTTCGTTTCCCGGG
GGCTCTTTTTCTTGCTTGACGTCCAAATTTTAGAGCTTTTTCTAGCCCTA
TTTGTCTTCATAGCCATACATTCACTGAGGAAGAAAAAACGTTACGGGCT
GCCCATATGGCCATTCCTAGGCATGTTACCGTCTCTCATCTCCGGTCTCC
AGGGCAACATGTACGAATGGATGACCGACATCATTATAAGCCAAAGCGGA
ACGTTTAGATTCAAAGGTCCCTGGCTTAGCAGCCTCAATTGTGTCGTCAC
CTCCGATCCTCGTAACCTTGAGCATCTTCTCAAGACCAAGTTCCCCAACT
TCCCTAAAGGACATTACTTCCGCGACACCGTTCGTGATCTTTTGGGTGAC
GGGATATTCAACGCCGACGACGAGACGTGGCTCCGGCAAAGAAAGACCTC
CAGCATCGAGTTCCATTCTGCAAAGTTCCGGCAAATGACGACCGAGTCGT
TGTTCGAGCTTGTGCACTCCAGACTCTTACCTGTCCTCGAAAGTTCATTA
AACAGCTCGGCGGCTATTGATCTACAGGACGTATTACTGAGACTGACGTT
CGATAATGTATGCATGATAGCTTTCGGGGCTGATCCGGGGTGTTTACGGG
TAGGGTTACCCGAGATCCCGTTTGCTAAGGCCTTCGAGGATGCAACCGAG
GCGACGGTGTTGCGTTTCGTCACCCCTACTTGTGTGTGGAAAACGATGAG
GTTTCTTGATATAGGTAACGAGAAGAAGCTGAAAAGATCCATAAAGGGTG
TCGATGAGTTTGCTGATGAAGTGATACTAA
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