FC878440

Overview
NameFC878440
Unique NameFC878440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length870
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878440 vs. ExPASy Swiss-Prot
Match: ERD22_CAEEL (Putative ER lumen protein retaining receptor C28H8.4 OS=Caenorhabditis elegans GN=C28H8.4 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.563e-26
Identity = 72/217 (33.18%), Postives = 119/217 (54.84%), Query Frame = 3
Query:  213 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILN-RIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSV 848
            N+F ++A+  H + I +L+ K+ K ++C+G+S +SQ L A+    R   L+ +++  Y+                +Y++ F  RS+YM + D F +  ++VP A+LALLI+    H+     + W F +YLEAV++LPQL ++Q+T   E  TAHY+FALG  R L   +W+ +                +  +V+++ IVQT + ADF Y YV  V
Sbjct:    2 NIFRISADMSHLLAIIILLLKIWKSRSCSGISARSQILFALVFTARYLDLFSTYISLYNTTMKITFLAATYA--TVYLMFFKFRSTYMRESDTFRVELLIVPAAILALLIN----HDFAPFELLWTFSIYLEAVAILPQLFLLQSTGSAEVITAHYLFALGSYRALYIFNWIYRYYTE----------DYFDPIVVVAGIVQTVLYADFFYLYVTRV 202          
BLAST of FC878440 vs. ExPASy Swiss-Prot
Match: ERD2_ENTHI (ER lumen protein retaining receptor OS=Entamoeba histolytica GN=ERD2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.911e-24
Identity = 68/222 (30.63%), Postives = 114/222 (51.35%), Query Frame = 3
Query:  213 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHXXXXXXXXXXXX-WVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKS-VFGGQLVL 869
            NLF ++A+ VH + I  L+ K++  K C G+SL+SQ L  I    R    F   Y ++             + IY+I    R++Y +  D   ++Y++VPC VLA +    T    +  I W F ++LEAV++LPQ+ ++++T  VE   + Y+F LG+ R L   +W+ +    + +         W  +  I   +QT +  ++ YYY+KS V G + VL
Sbjct:    4 NLFRISADLVHLLSIYFLLTKIISHKNCIGISLRSQILFFIVWVTRYLDIFYNFYSLYNTILKIVYLTTSAYTIYLISKRFRATYDKIHDTLNVWYLIVPCIVLAFIF---TEDYSITEICWTFSIFLEAVAILPQILLLRSTGEVENLNSQYIFCLGLYRALYIINWIYRYATEQSY---------WSPLTWICGSIQTLLYVEYFYYYIKSRVEGTKFVL 213          
BLAST of FC878440 vs. ExPASy Swiss-Prot
Match: ERD2_CAEEL (ER lumen protein retaining receptor OS=Caenorhabditis elegans GN=erd-2 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.496e-24
Identity = 68/214 (31.78%), Postives = 110/214 (51.40%), Query Frame = 3
Query:  213 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHXXXXXXXXXXXXW-VIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSV 848
            NLF   A+  H+I I VL+ K+ K ++C G+S +SQ L A+    R    F   +  +            +  +Y++    +++Y  + D+F I ++V+P  +LALLI+      I   + W F +YLEAV+++PQL ++  T   E  TAHY+FALG  RFL   +WV +                +  + +++ IVQT + ADF Y Y+  V
Sbjct:    2 NLFRFTADVAHAIAIVVLLLKIWKSRSCEGISGRSQLLFALVFVTRYLDLFTNFFSFYNTAMKIFYLVASFGTVYLMWAKFKATYDRNNDSFRIEFLVIPSMILALLINHEF---IFMEVMWTFSIYLEAVAIMPQLFMLSRTGNAETITAHYLFALGSYRFLYILNWVYRYYTE----------SFFDPISVVAGIVQTVLYADFFYLYITRV 202          
BLAST of FC878440 vs. ExPASy Swiss-Prot
Match: ERD2_DICDI (ER lumen protein retaining receptor OS=Dictyostelium discoideum GN=kdelr PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.259e-24
Identity = 70/227 (30.84%), Postives = 121/227 (53.30%), Query Frame = 3
Query:  213 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILN---RIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKS-VFGGQLVL 869
            NLF    + +H   + +L++K+  +K+CAG+SLKSQ L  I    R   L+ ++V  Y               + +++I    + +Y +D D F I Y++  CA+L+L+ +  T+  I +    I W F +YLE++++LPQL ++Q T  VE  T++Y+  LG  R     +W+ ++            Y     + ++S ++QT + ADF YYY KS ++G +LVL
Sbjct:    2 NLFSFLGDMLHLGSMLILLFKIKNDKSCAGVSLKSQILFTIVFTARYLDLFTNYVSLYITFMKITYIAVSY--YTLHLIARKYKFTYDKDHDTFKIVYLIASCAILSLITYDKTTIGIYSTFLEILWTFSIYLESIAILPQLILLQRTGEVEALTSNYIVLLGGYRAFYLFNWIYRI----------TFYNWSGKIEMLSGLLQTILYADFFYYYAKSRMYGKKLVL 216          
BLAST of FC878440 vs. ExPASy Swiss-Prot
Match: ERD2_CAEBR (ER lumen protein retaining receptor OS=Caenorhabditis briggsae GN=erd-2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.560e-24
Identity = 64/214 (29.91%), Postives = 110/214 (51.40%), Query Frame = 3
Query:  213 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVRLYCSFVMEYDIHXXXXXXXXXXXX-WVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSV 848
            N+F + A+  H++ I +L+ K+ K ++C G+S +SQ L A+    R    F   Y ++               +Y++    +++Y  + D F I ++V+P  +LAL+I+      +   + W F +YLEAV+++PQL ++  T   E  TAHY+FALG  RFL   +WV +                +  + +++ IVQT + ADF Y Y+  V
Sbjct:    2 NIFRITADLAHAVAIVILLLKIWKSRSCEGISGRSQILFAVTFFTRYLDLFTSFYSLYNTVMKVLFLAGSIGTVYLMWVKFKATYDRNNDTFRIEFLVIPSIILALIINHEF---MFMEVMWTFSIYLEAVAIMPQLFMLSRTGNAETITAHYLFALGSYRFLYIFNWVYRYYTE----------SFFDPIAVVAGIVQTVLYADFFYLYITRV 202          
BLAST of FC878440 vs. ExPASy Swiss-Prot
Match: ERD2_DROME (ER lumen protein retaining receptor OS=Drosophila melanogaster GN=KdelR PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.239e-23
Identity = 68/220 (30.91%), Postives = 117/220 (53.18%), Query Frame = 3
Query:  213 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQ 860
            N+F  A +  H   I +L+ K+ K ++CAG+S KSQ L A+    R   L+ ++V  Y+                +Y++    +++Y  + D+F I +++VPCA+L+L+I+   +   +  + W F +YLE+V++LPQL ++  T   E  T+HY+FALG  R L   +WV + +    + L+A+  G          +VQT +  DF Y Y+  V  G+
Sbjct:    2 NIFRFAGDLSHVFAIIILLLKIWKTRSCAGISGKSQILFAVVYLTRYLDLFTTYVSLYN--SVMKVLFLATSGATVYLMYVKFKATYDHNHDSFRIEFLLVPCALLSLVINHEFT---VMEVLWTFSIYLESVAILPQLFLVSRTGEAESITSHYLFALGSYRALYLLNWVYRYMVESHYDLIAIFAG----------VVQTVLYCDFFYLYITKVLKGK 206          
BLAST of FC878440 vs. ExPASy Swiss-Prot
Match: ERD2_PETHY (ER lumen protein retaining receptor OS=Petunia hybrida GN=ERD2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.759e-23
Identity = 68/217 (31.34%), Postives = 117/217 (53.92%), Query Frame = 3
Query:  213 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFN--LRSSYMEDKDNFAIYYVVVPCAVLALLIHPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKS 845
            N+F +A +  H   + VL+ K+   K+CAG+SLK+QEL A+    R   ++  F+  Y+               +++ +R +  +R SY +D+D F   ++V+PC +LAL+I+   +      + W F +YLEAV++LPQL ++Q T+ ++  T  Y+F LG  R     +WV +   +  H +       W  +  I+ ++QT + ADF YYY +S
Sbjct:    2 NIFRLAGDMTHLASVLVLLLKIHTIKSCAGVSLKTQELYALVFVTRYLDIFTDFISLYNTTMKLVFLGSSLS--IVWYMRHHKIVRRSYDKDQDTFRHLFLVLPCLLLALVINEKFT---FKEVMWTFSIYLEAVAILPQLVLLQRTRNIDNLTGQYIFLLGAYRSFYILNWVYRYF-TEPHFV------HW--ITWIAGLIQTLLYADFFYYYFQS 204          
BLAST of FC878440 vs. ExPASy Swiss-Prot
Match: ERD21_RAT (ER lumen protein retaining receptor 1 OS=Rattus norvegicus GN=Kdelr1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.706e-23
Identity = 72/221 (32.58%), Postives = 115/221 (52.04%), Query Frame = 3
Query:  213 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLI-HPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQ 860
            NLF    +  H + I +L+ K+ K ++CAG+S KSQ L A+    R   L+ +++  Y+                ++MI    +++Y  + D F + ++VVP AVLA L+ H  T   IL    W F +YLE+V++LPQL ++  T   E  T+HY+FALGV R L   +W+      R H       G +  + +++ +VQT +  DF Y Y+  V  G+
Sbjct:    2 NLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNT--CMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAVLAFLVNHDFTPLEIL----WTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIW-----RYHF-----EGFFDLIAIVAGLVQTVLYCDFFYLYITKVLKGK 206          
BLAST of FC878440 vs. ExPASy Swiss-Prot
Match: ERD21_MOUSE (ER lumen protein retaining receptor 1 OS=Mus musculus GN=Kdelr1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.147e-23
Identity = 71/221 (32.13%), Postives = 115/221 (52.04%), Query Frame = 3
Query:  213 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLI-HPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQ 860
            NLF    +  H + I +L+ K+ K ++CAG+S KSQ L A+    R   L+ +++  Y+                ++MI    +++Y  + D F + ++VVP A+LA L+ H  T   IL    W F +YLE+V++LPQL ++  T   E  T+HY+FALGV R L   +W+      R H       G +  + +++ +VQT +  DF Y Y+  V  G+
Sbjct:    2 NLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNT--CMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEIL----WTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIW-----RYHF-----EGFFDLIAIVAGLVQTVLYCDFFYLYITKVLKGK 206          
BLAST of FC878440 vs. ExPASy Swiss-Prot
Match: ERD21_BOVIN (ER lumen protein retaining receptor 1 OS=Bos taurus GN=KDELR1 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 8.028e-23
Identity = 70/221 (31.67%), Postives = 115/221 (52.04%), Query Frame = 3
Query:  213 NLF-VAAEAVHSIGISVLIYKLMKEKTCAGLSLKSQELTAIFLAVR---LYCSFVMEYDIHXXXXXXXXXXXXWVIYMIRFNLRSSYMEDKDNFAIYYVVVPCAVLALLI-HPSTSHNILNRIFWAFCVYLEAVSVLPQLRVMQNTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDSRGHLLVALGYGLWPSMVLISEIVQTFILADFCYYYVKSVFGGQ 860
            NLF    +  H + I +L+ K+ K ++CAG+S KSQ L A+    R   L+ +++  Y+                ++MI    +++Y  + D F + ++V+P A+LA L+ H  T   IL    W F +YLE+V++LPQL ++  T   E  T+HY+FALGV R L   +W+      R H       G +  + +++ +VQT +  DF Y Y+  V  G+
Sbjct:    2 NLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYNT--CMKVVYIACSFTTVWMIYSKFKATYDGNHDTFRVEFLVIPTAILAFLVNHDFTPLEIL----WTFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIW-----RYHF-----EGFFDLIAIVAGLVQTVLYCDFFYLYITKVLKGK 206          
The following BLAST results are available for this feature:
BLAST of FC878440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ERD22_CAEEL1.563e-2633.18Putative ER lumen protein retaining receptor C28H8... [more]
ERD2_ENTHI1.911e-2430.63ER lumen protein retaining receptor OS=Entamoeba h... [more]
ERD2_CAEEL2.496e-2431.78ER lumen protein retaining receptor OS=Caenorhabdi... [more]
ERD2_DICDI3.259e-2430.84ER lumen protein retaining receptor OS=Dictyosteli... [more]
ERD2_CAEBR5.560e-2429.91ER lumen protein retaining receptor OS=Caenorhabdi... [more]
ERD2_DROME1.239e-2330.91ER lumen protein retaining receptor OS=Drosophila ... [more]
ERD2_PETHY2.759e-2331.34ER lumen protein retaining receptor OS=Petunia hyb... [more]
ERD21_RAT4.706e-2332.58ER lumen protein retaining receptor 1 OS=Rattus no... [more]
ERD21_MOUSE6.147e-2332.13ER lumen protein retaining receptor 1 OS=Mus muscu... [more]
ERD21_BOVIN8.028e-2331.67ER lumen protein retaining receptor 1 OS=Bos tauru... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA22DH01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22DH01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878440 ID=FC878440; Name=FC878440; organism=Citrus clementina; type=EST; length=870bp
CTCGCTCTCTCTAAATTACATCTCACTCTCTCGCACTTTCTCTTAATTTC
CGGTAAAATATTTTTAGACCGCTCATGAGGGCGCCGAAGAGGCCGATCCA
CGCGGTTTCGACATGGGTCCGGCGACAGCCGCCGAAAGTGAAGGCATTTT
TGGCGGTGGTCTCCGGCATGGCAGCGCTGGTTTTGCTCCGATTCATTGTA
CACGACCACGATAACCTCTTCGTTGCTGCCGAGGCCGTGCACTCCATTGG
AATCTCCGTGTTAATATACAAGCTCATGAAAGAGAAAACTTGTGCTGGAC
TGTCACTCAAATCCCAGGAACTAACAGCTATTTTCTTAGCTGTGAGGCTA
TACTGTAGTTTTGTGATGGAATATGATATACACACCCTACTGGATTTAGC
TACTTTGGCTACGACCCTTTGGGTTATTTATATGATCCGTTTCAATCTAA
GGTCTAGTTACATGGAGGACAAGGACAACTTTGCAATATATTATGTGGTG
GTACCCTGTGCAGTATTGGCTCTGTTAATTCATCCATCGACTTCGCATAA
TATATTGAATAGGATTTTCTGGGCTTTCTGTGTTTATCTGGAAGCTGTTT
CAGTACTGCCCCAGTTGCGGGTGATGCAGAACACAAAGATTGTTGAACCA
TTCACAGCCCATTATGTATTTGCGCTTGGTGTTGCGAGGTTTTTGAGCTG
TGCCCACTGGGTTCTCCAGGTTCTGGATAGTCGTGGACACTTGCTGGTAG
CCCTGGGCTATGGATTATGGCCTTCGATGGTGCTTATCTCAGAGATTGTC
CAAACTTTCATCTTAGCGGACTTCTGTTACTACTATGTCAAAAGTGTCTT
TGGCGGACAGCTAGTCCTCC
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