FC878441

Overview
NameFC878441
Unique NameFC878441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length870
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878441 vs. ExPASy Swiss-Prot
Match: BCS1_YEAST (Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae GN=BCS1 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.588e-13
Identity = 38/91 (41.76%), Postives = 63/91 (69.23%), Query Frame = 3
Query:  600 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVVT-SDSSLEYLLLHVPNRSILV 869
            ++++D  +KE +L+D+  F +  ++Y   G  ++RGYLLYGPPG+GK+S I A+A  ++Y+I  LNLS    +D  L +L+ ++P RSIL+
Sbjct:  227 SVILDSGIKEGILDDVYDFMKNGKWYSDRGIPYRRGYLLYGPPGSGKTSFIQALAGELDYNICILNLSENNLTDDRLNHLMNNMPERSILL 317          
BLAST of FC878441 vs. ExPASy Swiss-Prot
Match: BCS1_SCHPO (Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe GN=SPAC644.07 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.767e-13
Identity = 38/115 (33.04%), Postives = 71/115 (61.74%), Query Frame = 3
Query:  537 TIRHDRWSSSGVNLDHPMT---FGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVV-TSDSSLEYLLLHVPNRSILV 869
            T  +  W++      HP +     ++V++ ++K+ + +D+  F R  ++Y   G  ++RGYLLYGPPG+GK+S + A+A  ++YDI  LNL+    +D  L +LL +VP +++++
Sbjct:  185 TTIYTAWATEWKPFGHPRSKRMLSSVVLESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALAGELDYDICVLNLAEKGLTDDRLNHLLSNVPPKAVVL 299          
BLAST of FC878441 vs. ExPASy Swiss-Prot
Match: BCS1A_DICDI (Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum GN=bcs1la PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.191e-12
Identity = 49/162 (30.25%), Postives = 86/162 (53.09%), Query Frame = 3
Query:  387 DINSTSHFETRWYELKFHKMHAELVKKKYLVHVLEMAKMFKDRNRIVRFHTIRHDRWSSSGVNLDHPMTFGTLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLSVV-TSDSSLEYLLLHVPNRSILV 869
            D+ + + FE+    +  +K +A+L+ +  L+       + +D  + V +    +  W   G N     +  ++++  DLK  ++ D+  F   + +YR  G  ++RGYLLYG PG GKSSLI A+A  +N DI  ++LS     D  + +LL + P +SIL+
Sbjct:  122 DMGAGAPFES--ISISTYKSNAQLINQ--LLQEAMTLSLNRDIGKTVIYINGGNGNWERFG-NPRSIRSLSSVILADDLKSKLIEDIKSFITNESWYRNRGIPYRRGYLLYGEPGNGKSSLINAIAGELNLDICIVSLSSKDIDDKQINHLLNNAPPKSILL 278          
BLAST of FC878441 vs. ExPASy Swiss-Prot
Match: BCS1B_DICDI (Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.738e-12
Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  600 TLVMDGDLKETVLNDLDCFRRGKEYYRKIGKVWKRGYLLYGPPGTGKSSLIAAMANYMNYDIYNLNLS-VVTSDSSLEYLLLHVPNRSILV 869
            ++++D    E ++ D+  F    ++Y   G  ++RGYLLYGPPGTGKSS I A+A  +   I  LNL+    SD+SL  LL   P RSI++
Sbjct:  208 SVILDKGKSELIIQDVKKFLNNSDWYNDRGIPYRRGYLLYGPPGTGKSSFITALAGELQLSICILNLAGKSVSDTSLNQLLATAPQRSIIL 298          
The following BLAST results are available for this feature:
BLAST of FC878441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
BCS1_YEAST2.588e-1341.76Mitochondrial chaperone BCS1 OS=Saccharomyces cere... [more]
BCS1_SCHPO5.767e-1333.04Probable mitochondrial chaperone bcs1 OS=Schizosac... [more]
BCS1A_DICDI2.191e-1230.25Probable mitochondrial chaperone BCS1-A OS=Dictyos... [more]
BCS1B_DICDI3.738e-1241.76Probable mitochondrial chaperone BCS1-B OS=Dictyos... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA60DB10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA60DB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878441 ID=FC878441; Name=FC878441; organism=Citrus clementina; type=EST; length=870bp
TGATTGAGTAGGCCAAGGCAAGGCAAGGCAAGAGGCAAGGCGAGATGGGA
TCAGCTTTCTCAGTGGTGGCCTCAGTGGCCATACTTCGGAGCACATTCAA
CGAAATGATTCCGGATGAAGTACGCGGCTATATTTGGAGCATCACTCGCC
GCTTCTCAACGGAGATCACCATGGTCATTAAAGAATCCCACGACGGCTCA
ACTAACCGTCTCTTCAAAGCCGTCGTCACTTACCTCGACGGCCACGCTCT
CTCCAACTCCGTCCTCCCCAAACGCCTCACCGTCGGCAAGAACGAGAACG
TCAGAAACTTTACCTACGGCCTCGAGCGCAACTCCGAGATCGTCGACGTT
TTCCAAGGCGTGACCATGAAGTGGAAGTTCAATTCTGACATCAACTCAAC
CAGCCACTTCGAGACGAGGTGGTACGAGCTCAAGTTTCACAAAATGCACG
CTGAGTTGGTCAAGAAGAAGTATCTTGTCCATGTTCTTGAAATGGCTAAG
ATGTTCAAGGATCGGAATCGTATAGTGAGGTTCCACACTATAAGGCATGA
CCGCTGGAGCTCCAGTGGAGTGAATCTCGACCATCCGATGACCTTTGGTA
CGTTGGTTATGGACGGCGACTTGAAAGAGACTGTGCTGAACGATCTTGAT
TGTTTCAGAAGAGGGAAGGAGTATTACAGGAAGATCGGTAAAGTTTGGAA
GAGAGGTTACTTGTTGTACGGGCCACCGGGAACCGGCAAGTCCAGTTTGA
TTGCTGCTATGGCTAATTATATGAATTATGATATTTACAACTTGAACTTA
TCGGTTGTCACTTCCGATTCTTCACTTGAGTACTTGCTGCTCCATGTGCC
TAACCGTTCAATTCTTGTTG
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