FC878442

Overview
NameFC878442
Unique NameFC878442
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length940
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878442 vs. ExPASy Swiss-Prot
Match: TRP13_HUMAN (Thyroid receptor-interacting protein 13 OS=Homo sapiens GN=TRIP13 PE=1 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 7.678e-58
Identity = 110/234 (47.01%), Postives = 157/234 (67.09%), Query Frame = 3
Query:  183 LPLLAEEKFLVSVEVCLTLSSTARIDDVRLAVERMLEKRSLSYVXXXXXXXXXXXFLVENVQRICVCDTDEWVKNHDILLFWQVKPVVQVFQLSEEGPCEELSGDG--QLSSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEE 878
            LP +AE    V VEV    SSTA+ +D+ L+V ++L + ++ +            FL  NVQ + + DT+  VK+   +        + +FQL+E+GP  E   +    + + N W+LPA EF G+W+SL+Y+  +K  LL Y  + L+F++K VN  L++WNR+VLLHGPPGTGKTSLCKALAQKL+IR SSRY   QL+E+N+HSLFSKWFSESGKLV K+FQKIQ++++++
Sbjct:   12 LPCVAESP-TVHVEVHQRGSSTAKKEDINLSVRKLLNRHNIVF-GDYTWTEFDEPFLTRNVQSVSIIDTELKVKDSQPIDLSACTVALHIFQLNEDGPSSENLEEETENIIAANHWVLPAAEFHGLWDSLVYDVEVKSHLLDYVMTTLLFSDKNVNSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDK 243          

HSP 2 Score: 32.3426 bits (72), Expect = 7.678e-58
Identity = 16/21 (76.19%), Postives = 18/21 (85.71%), Query Frame = 2
Query:  875 RNHLVFVLIDEVESLAAARKA 937
            ++ LVFVLIDEVESL AAR A
Sbjct:  243 KDALVFVLIDEVESLTAARNA 263          
BLAST of FC878442 vs. ExPASy Swiss-Prot
Match: TRP13_RAT (Thyroid receptor-interacting protein 13 OS=Rattus norvegicus GN=Trip13 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.102e-56
Identity = 107/234 (45.73%), Postives = 156/234 (66.67%), Query Frame = 3
Query:  183 LPLLAEEKFLVSVEVCLTLSSTARIDDVRLAVERMLEKRSLSYVXXXXXXXXXXXFLVENVQRICVCDTDEWVKNHDILLFWQVKPVVQVFQLSEEGPCEELSGDG--QLSSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEE 878
            LP +AE    V VEV     STA+ +D++ +V R+L++ ++ +            FL  NVQ + + DT+   K+   +        + +FQL+EEGP  E   +    + + + W+LPA EF G+W+SL+Y+  +K  LL Y  + L+F++K V+  L++WNR+VLLHGPPGTGKTSLCKALAQKL+IR SSRY   QL+E+N+HSLFSKWFSESGKLV K+FQKIQ++++++
Sbjct:   12 LPCVAESP-AVHVEVLQRSGSTAKKEDIKQSVYRLLKRHNIVF-GDYVWTEFDEPFLTRNVQSVSIVDTELKAKDPQPIDLSACTIALHIFQLNEEGPSSENLDEETENIIAASHWVLPAAEFHGLWDSLVYDVEVKSHLLDYVMTTLLFSDKNVDSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDK 243          

HSP 2 Score: 31.9574 bits (71), Expect = 4.102e-56
Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = 2
Query:  884 LVFVLIDEVESLAAARKA 937
            LVFVLIDEVESL AAR A
Sbjct:  246 LVFVLIDEVESLTAARNA 263          
BLAST of FC878442 vs. ExPASy Swiss-Prot
Match: TRP13_MOUSE (Thyroid receptor-interacting protein 13 OS=Mus musculus GN=Trip13 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.014e-55
Identity = 106/234 (45.30%), Postives = 155/234 (66.24%), Query Frame = 3
Query:  183 LPLLAEEKFLVSVEVCLTLSSTARIDDVRLAVERMLEKRSLSYVXXXXXXXXXXXFLVENVQRICVCDTDEWVKNHDILLFWQVKPVVQVFQLSEEGPCEELSGDG--QLSSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEE 878
            LP +AE    V VEV     STA+ +D++ +V R+L + ++ +            FL  NVQ + + DT+   K+   +        + +FQL+EEGP  E   +    + + + W+LPA EF G+W+SL+Y+  +K  LL Y  + ++F++K V+  L++WNR+VLLHGPPGTGKTSLCKALAQKL+IR SSRY   QL+E+N+HSLFSKWFSESGKLV K+FQKIQ++++++
Sbjct:   12 LPCVAESP-AVHVEVLQRSGSTAKKEDIKSSVYRLLNRHNIVF-GDYVWTEFDDPFLSRNVQSVSIVDTELKAKDPQPIDLSACTIALHIFQLNEEGPSSENLDEETENIIAASHWVLPAAEFHGLWDSLVYDVEVKSHLLDYVMTTVLFSDKNVDSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDK 243          

HSP 2 Score: 31.9574 bits (71), Expect = 2.014e-55
Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = 2
Query:  884 LVFVLIDEVESLAAARKA 937
            LVFVLIDEVESL AAR A
Sbjct:  246 LVFVLIDEVESLTAARNA 263          
BLAST of FC878442 vs. ExPASy Swiss-Prot
Match: PCH2_CAEEL (Putative pachytene checkpoint protein 2 OS=Caenorhabditis elegans GN=pch-2 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 9.653e-39
Identity = 73/149 (48.99%), Postives = 103/149 (69.13%), Query Frame = 3
Query:  444 VQVFQLSEEGPCEEL----SGDGQLSSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEE 878
            + V++L ++GP  +      GD  +     W LP  EFD +WE+LIY+S LK  ++ Y A+    +EK VN  +++ NR++LL GPPGTGKTSLCK LAQ LSIR + +Y +  ++E+N+HSLFSKWFSESGKLV K+F +I E+ E+E
Sbjct:   95 IHVYKLHKDGPLSQNIGDDDGDESIIGSQLWQLPCVEFDSIWENLIYDSNLKNEVMSYVAALARLSEKHVNTKIINVNRLILLTGPPGTGKTSLCKGLAQHLSIRMNDKYSKSVMLEINSHSLFSKWFSESGKLVQKMFDQIDELAEDE 243          

HSP 2 Score: 27.335 bits (59), Expect = 9.653e-39
Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 2
Query:  884 LVFVLIDEVESLAAARKAA 940
            +VFVLIDEVESL   R+++
Sbjct:  246 MVFVLIDEVESLGMCRESS 264          
BLAST of FC878442 vs. ExPASy Swiss-Prot
Match: PCH2_YEAST (Pachytene checkpoint protein 2 OS=Saccharomyces cerevisiae GN=PCH2 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.929e-20
Identity = 54/139 (38.85%), Postives = 84/139 (60.43%), Query Frame = 3
Query:  504 LSSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALM---FAEKGVN-----PFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIR--FSSRYPQCQ------LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVE 872
            L+  N   LP   F+G WESL + + +K+RL  YA  +L    F + G +       L++ N+++L+HGPPGTGKT+LCKAL QKLS+R  FS             ++E++   +FSKWF ES K ++ +F+ I+E+++
Sbjct:  246 LNLVNISYLPGTTFEGQWESLYFGNNIKERLYSYATISLKIARFKQTGDSNQEDITTLITNNKLLLVHGPPGTGKTTLCKALCQKLSVRREFSDGSDTIDTNYKGIIIELSCARIFSKWFGESSKNISIVFKDIEELLK 384          

HSP 2 Score: 24.6386 bits (52), Expect = 5.929e-20
Identity = 10/20 (50.00%), Postives = 16/20 (80.00%), Query Frame = 2
Query:  872 GRNHLVFVLIDEVESLAAAR 931
            GR   + +LIDEVE++A++R
Sbjct:  388 GRGIFICLLIDEVEAIASSR 407          
The following BLAST results are available for this feature:
BLAST of FC878442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TRP13_HUMAN7.678e-5847.01Thyroid receptor-interacting protein 13 OS=Homo sa... [more]
TRP13_RAT4.102e-5645.73Thyroid receptor-interacting protein 13 OS=Rattus ... [more]
TRP13_MOUSE2.014e-5545.30Thyroid receptor-interacting protein 13 OS=Mus mus... [more]
PCH2_CAEEL9.653e-3948.99Putative pachytene checkpoint protein 2 OS=Caenorh... [more]
PCH2_YEAST5.929e-2038.85Pachytene checkpoint protein 2 OS=Saccharomyces ce... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA15CB11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA15CB11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878442 ID=FC878442; Name=FC878442; organism=Citrus clementina; type=EST; length=940bp
CTAGGCCTAGGGTTTGACACAGTATCCAATCCTCTGTGAAGCCGTTCACA
TTGTAATCCCTAATCCCGGTTACGCTCACCAAAATGAGTACTCCCATGGA
AATCACCGTACATAACTCCACAGAAGCCGAGATCTCTGACCAAGACGGCA
TCCCCGAGCAAAAAGGCGTCGCCGGCCCTCCCCTGCCTCTTCTCGCCGAA
GAAAAATTTCTCGTATCCGTTGAAGTTTGTTTAACGCTCTCAAGCACAGC
TCGAATAGACGATGTTAGGTTAGCTGTTGAAAGAATGCTTGAAAAGAGAA
GTTTAAGCTATGTAGATGGGCCGATCCCCATCCCTATTGATGATCCGTTT
CTTGTCGAAAATGTACAAAGAATCTGTGTTTGTGATACAGATGAATGGGT
AAAGAACCATGATATTCTTTTGTTCTGGCAAGTCAAGCCTGTAGTTCAAG
TCTTTCAGCTTAGTGAGGAAGGACCCTGTGAGGAACTTAGTGGGGATGGC
CAGCTGTCTAGCTTTAATGAATGGATTCTTCCTGCCAAGGAATTTGATGG
CATGTGGGAAAGCCTGATTTATGAATCTGGTCTCAAGCAAAGGTTATTGC
ACTATGCAGCAAGTGCATTGATGTTCGCTGAGAAGGGTGTTAATCCTTTC
CTCGTGTCATGGAACCGCATTGTCCTGTTACATGGACCTCCAGGAACTGG
GAAAACGTCATTATGTAAAGCATTGGCTCAAAAACTGTCTATTCGATTCA
GCTCCAGATATCCTCAGTGCCAGTTGGTTGAAGTTAACGCACACTCTTTA
TTTAGTAAATGGTTCTCTGAAAGTGGGAAGTTGGTTGCCAAGCTTTTTCA
AAAAATTCAAGAAATGGTAGAGGAAGAAATCATCTGGTATTTGTTTTGAT
TGATGAAGTTGAAAGTCTTGCTGCTGCTAGAAAGGCTGCT
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