FC878442
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878442 vs. ExPASy Swiss-Prot
Match: TRP13_HUMAN (Thyroid receptor-interacting protein 13 OS=Homo sapiens GN=TRIP13 PE=1 SV=2) HSP 1 Score: 213.772 bits (543), Expect = 7.678e-58 Identity = 110/234 (47.01%), Postives = 157/234 (67.09%), Query Frame = 3 Query: 183 LPLLAEEKFLVSVEVCLTLSSTARIDDVRLAVERMLEKRSLSYVXXXXXXXXXXXFLVENVQRICVCDTDEWVKNHDILLFWQVKPVVQVFQLSEEGPCEELSGDG--QLSSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEE 878 LP +AE V VEV SSTA+ +D+ L+V ++L + ++ + FL NVQ + + DT+ VK+ + + +FQL+E+GP E + + + N W+LPA EF G+W+SL+Y+ +K LL Y + L+F++K VN L++WNR+VLLHGPPGTGKTSLCKALAQKL+IR SSRY QL+E+N+HSLFSKWFSESGKLV K+FQKIQ++++++ Sbjct: 12 LPCVAESP-TVHVEVHQRGSSTAKKEDINLSVRKLLNRHNIVF-GDYTWTEFDEPFLTRNVQSVSIIDTELKVKDSQPIDLSACTVALHIFQLNEDGPSSENLEEETENIIAANHWVLPAAEFHGLWDSLVYDVEVKSHLLDYVMTTLLFSDKNVNSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDK 243 HSP 2 Score: 32.3426 bits (72), Expect = 7.678e-58 Identity = 16/21 (76.19%), Postives = 18/21 (85.71%), Query Frame = 2 Query: 875 RNHLVFVLIDEVESLAAARKA 937 ++ LVFVLIDEVESL AAR A Sbjct: 243 KDALVFVLIDEVESLTAARNA 263
BLAST of FC878442 vs. ExPASy Swiss-Prot
Match: TRP13_RAT (Thyroid receptor-interacting protein 13 OS=Rattus norvegicus GN=Trip13 PE=2 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 4.102e-56 Identity = 107/234 (45.73%), Postives = 156/234 (66.67%), Query Frame = 3 Query: 183 LPLLAEEKFLVSVEVCLTLSSTARIDDVRLAVERMLEKRSLSYVXXXXXXXXXXXFLVENVQRICVCDTDEWVKNHDILLFWQVKPVVQVFQLSEEGPCEELSGDG--QLSSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEE 878 LP +AE V VEV STA+ +D++ +V R+L++ ++ + FL NVQ + + DT+ K+ + + +FQL+EEGP E + + + + W+LPA EF G+W+SL+Y+ +K LL Y + L+F++K V+ L++WNR+VLLHGPPGTGKTSLCKALAQKL+IR SSRY QL+E+N+HSLFSKWFSESGKLV K+FQKIQ++++++ Sbjct: 12 LPCVAESP-AVHVEVLQRSGSTAKKEDIKQSVYRLLKRHNIVF-GDYVWTEFDEPFLTRNVQSVSIVDTELKAKDPQPIDLSACTIALHIFQLNEEGPSSENLDEETENIIAASHWVLPAAEFHGLWDSLVYDVEVKSHLLDYVMTTLLFSDKNVDSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDK 243 HSP 2 Score: 31.9574 bits (71), Expect = 4.102e-56 Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = 2 Query: 884 LVFVLIDEVESLAAARKA 937 LVFVLIDEVESL AAR A Sbjct: 246 LVFVLIDEVESLTAARNA 263
BLAST of FC878442 vs. ExPASy Swiss-Prot
Match: TRP13_MOUSE (Thyroid receptor-interacting protein 13 OS=Mus musculus GN=Trip13 PE=2 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 2.014e-55 Identity = 106/234 (45.30%), Postives = 155/234 (66.24%), Query Frame = 3 Query: 183 LPLLAEEKFLVSVEVCLTLSSTARIDDVRLAVERMLEKRSLSYVXXXXXXXXXXXFLVENVQRICVCDTDEWVKNHDILLFWQVKPVVQVFQLSEEGPCEELSGDG--QLSSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEE 878 LP +AE V VEV STA+ +D++ +V R+L + ++ + FL NVQ + + DT+ K+ + + +FQL+EEGP E + + + + W+LPA EF G+W+SL+Y+ +K LL Y + ++F++K V+ L++WNR+VLLHGPPGTGKTSLCKALAQKL+IR SSRY QL+E+N+HSLFSKWFSESGKLV K+FQKIQ++++++ Sbjct: 12 LPCVAESP-AVHVEVLQRSGSTAKKEDIKSSVYRLLNRHNIVF-GDYVWTEFDDPFLSRNVQSVSIVDTELKAKDPQPIDLSACTIALHIFQLNEEGPSSENLDEETENIIAASHWVLPAAEFHGLWDSLVYDVEVKSHLLDYVMTTVLFSDKNVDSNLITWNRVVLLHGPPGTGKTSLCKALAQKLTIRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDK 243 HSP 2 Score: 31.9574 bits (71), Expect = 2.014e-55 Identity = 16/18 (88.89%), Postives = 16/18 (88.89%), Query Frame = 2 Query: 884 LVFVLIDEVESLAAARKA 937 LVFVLIDEVESL AAR A Sbjct: 246 LVFVLIDEVESLTAARNA 263
BLAST of FC878442 vs. ExPASy Swiss-Prot
Match: PCH2_CAEEL (Putative pachytene checkpoint protein 2 OS=Caenorhabditis elegans GN=pch-2 PE=2 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 9.653e-39 Identity = 73/149 (48.99%), Postives = 103/149 (69.13%), Query Frame = 3 Query: 444 VQVFQLSEEGPCEEL----SGDGQLSSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALMFAEKGVNPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFSSRYPQCQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEE 878 + V++L ++GP + GD + W LP EFD +WE+LIY+S LK ++ Y A+ +EK VN +++ NR++LL GPPGTGKTSLCK LAQ LSIR + +Y + ++E+N+HSLFSKWFSESGKLV K+F +I E+ E+E Sbjct: 95 IHVYKLHKDGPLSQNIGDDDGDESIIGSQLWQLPCVEFDSIWENLIYDSNLKNEVMSYVAALARLSEKHVNTKIINVNRLILLTGPPGTGKTSLCKGLAQHLSIRMNDKYSKSVMLEINSHSLFSKWFSESGKLVQKMFDQIDELAEDE 243 HSP 2 Score: 27.335 bits (59), Expect = 9.653e-39 Identity = 12/19 (63.16%), Postives = 16/19 (84.21%), Query Frame = 2 Query: 884 LVFVLIDEVESLAAARKAA 940 +VFVLIDEVESL R+++ Sbjct: 246 MVFVLIDEVESLGMCRESS 264
BLAST of FC878442 vs. ExPASy Swiss-Prot
Match: PCH2_YEAST (Pachytene checkpoint protein 2 OS=Saccharomyces cerevisiae GN=PCH2 PE=1 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 5.929e-20 Identity = 54/139 (38.85%), Postives = 84/139 (60.43%), Query Frame = 3 Query: 504 LSSFNEWILPAKEFDGMWESLIYESGLKQRLLHYAASALM---FAEKGVN-----PFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIR--FSSRYPQCQ------LVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVE 872 L+ N LP F+G WESL + + +K+RL YA +L F + G + L++ N+++L+HGPPGTGKT+LCKAL QKLS+R FS ++E++ +FSKWF ES K ++ +F+ I+E+++ Sbjct: 246 LNLVNISYLPGTTFEGQWESLYFGNNIKERLYSYATISLKIARFKQTGDSNQEDITTLITNNKLLLVHGPPGTGKTTLCKALCQKLSVRREFSDGSDTIDTNYKGIIIELSCARIFSKWFGESSKNISIVFKDIEELLK 384 HSP 2 Score: 24.6386 bits (52), Expect = 5.929e-20 Identity = 10/20 (50.00%), Postives = 16/20 (80.00%), Query Frame = 2 Query: 872 GRNHLVFVLIDEVESLAAAR 931 GR + +LIDEVE++A++R Sbjct: 388 GRGIFICLLIDEVEAIASSR 407 The following BLAST results are available for this feature:
BLAST of FC878442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878442 ID=FC878442; Name=FC878442; organism=Citrus clementina; type=EST; length=940bpback to top |