FC878450

Overview
NameFC878450
Unique NameFC878450
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length898
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878450 vs. ExPASy Swiss-Prot
Match: NCED3_ARATH (9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.514e-59
Identity = 106/134 (79.10%), Postives = 118/134 (88.06%), Query Frame = 3
Query:  495 VSQERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFVQERSLSHPVFPKAIGELHGHTGIARLLLFYSRALFGLV 896
            VS E+ HPLPKTADP+VQIAGNF+PV E+PV +NLP  GK+PD I+GVYVRNGANPLHEPV GHHFFDGDGMVHAVKF  GS SY+CRFT+TNRFVQER L  PVFPKAIGELHGHTGIARL+LFY+RA  G+V
Sbjct:  105 VSHEKLHPLPKTADPSVQIAGNFAPVNEQPVRRNLPVVGKLPDSIKGVYVRNGANPLHEPVTGHHFFDGDGMVHAVKFEHGSASYACRFTQTNRFVQERQLGRPVFPKAIGELHGHTGIARLMLFYARAAAGIV 238          
BLAST of FC878450 vs. ExPASy Swiss-Prot
Match: NCED1_PHAVU (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 4.288e-59
Identity = 108/156 (69.23%), Postives = 118/156 (75.64%), Query Frame = 3
Query:  429 PSKWNFXXXXXXXXXXXXXXXXVSQERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFVQERSLSHPVFPKAIGELHGHTGIARLLLFYSRALFGLV 896
            P KWNF                VS E +HPLPKTADP VQIAGNF+PVPE    Q LP  GK+P CI GVYVRNGANPL+EPVAGHHFFDGDGMVHAVKF  G+ SY+CRFTET R  QE+SL  PVFPKAIGELHGH+GIARLLLFY+R+LF LV
Sbjct:  102 PQKWNFLQKAAATGLDMVETALVSHESKHPLPKTADPKVQIAGNFAPVPEHAADQALPVVGKIPKCIDGVYVRNGANPLYEPVAGHHFFDGDGMVHAVKFTNGAASYACRFTETQRLAQEKSLGRPVFPKAIGELHGHSGIARLLLFYARSLFQLV 257          
BLAST of FC878450 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.740e-58
Identity = 103/132 (78.03%), Postives = 114/132 (86.36%), Query Frame = 3
Query:  501 QERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFVQERSLSHPVFPKAIGELHGHTGIARLLLFYSRALFGLV 896
            + R+HP PKTADP VQIAGNF PVPEKPV  NLP TG VP+CIQGVYVRNGANPLH+PV+GHH FDGDGMVHAV+F+ GSVSY+CRFTETNR VQER    PVFPKAIGELHGH GIA+L+LF +R LFGLV
Sbjct:  167 ERRRHPHPKTADPAVQIAGNFFPVPEKPVVHNLPVTGTVPECIQGVYVRNGANPLHKPVSGHHLFDGDGMVHAVRFDNGSVSYACRFTETNRLVQERECGRPVFPKAIGELHGHLGIAKLMLFNTRGLFGLV 298          
BLAST of FC878450 vs. ExPASy Swiss-Prot
Match: NCED2_ARATH (9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.832e-53
Identity = 100/169 (59.17%), Postives = 116/169 (68.64%), Query Frame = 3
Query:  390 TTKQQPKENDNFAPSKWNFXXXXXXXXXXXXXXXXVSQERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFVQERSLSHPVFPKAIGELHGHTGIARLLLFYSRALFGLV 896
            TT   P+ N    P + N                 +S E+  PLPKTADP VQIAGN+SPVPE  V +NL   G +PDCI GVY+RNGANP+ EP AGHH FDGDGMVHAVK   GS SY+CRFT+T R VQE+ L  PVFPKAIGELHGH+GIARL+LFY+R L GL+
Sbjct:   57 TTATPPQHN----PLRLNIFQKAAAIAIDAAERALISHEQDSPLPKTADPRVQIAGNYSPVPESSVRRNLTVEGTIPDCIDGVYIRNGANPMFEPTAGHHLFDGDGMVHAVKITNGSASYACRFTKTERLVQEKRLGRPVFPKAIGELHGHSGIARLMLFYARGLCGLI 221          
BLAST of FC878450 vs. ExPASy Swiss-Prot
Match: NCED5_ARATH (Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 5.076e-52
Identity = 95/155 (61.29%), Postives = 112/155 (72.26%), Query Frame = 3
Query:  432 SKWNFXXXXXXXXXXXXXXXXVSQERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFVQERSLSHPVFPKAIGELHGHTGIARLLLFYSRALFGLV 896
            S+WN                 + +ER  PLPKT DP  QI+GN++PVPE+ V  +L   GK+PDCI GVY+RNGANPL EPV+GHH FDGDGMVHAVK   G  SYSCRFTET R VQE+ L  P+FPKAIGELHGH+GIARL+LFY+R LFGL+
Sbjct:   74 SRWNPLQRAASAALDFAETALLRRERSKPLPKTVDPRHQISGNYAPVPEQSVKSSLSVDGKIPDCIDGVYLRNGANPLFEPVSGHHLFDGDGMVHAVKITNGDASYSCRFTETERLVQEKQLGSPIFPKAIGELHGHSGIARLMLFYARGLFGLL 228          
BLAST of FC878450 vs. ExPASy Swiss-Prot
Match: NCED1_MAIZE (9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.868e-46
Identity = 88/132 (66.67%), Postives = 102/132 (77.27%), Query Frame = 3
Query:  504 ERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSV-SYSCRFTETNRFVQERSLSHPVFPKAIGELHGHTGIARLLLFYSRALFGLV 896
            ER H LP TADP VQIAGNF+PV E+P    LP +G++P  I GVY RNGANP  +PVAGHH FDGDGMVHA++   G+  SY+CRFTET R  QER++  PVFPKAIGELHGH+GIARL LFY+RA  GLV
Sbjct:  108 ERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGANPCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLV 239          
BLAST of FC878450 vs. ExPASy Swiss-Prot
Match: NCED6_ARATH (9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.596e-43
Identity = 80/135 (59.26%), Postives = 99/135 (73.33%), Query Frame = 3
Query:  495 VSQERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFN-KGSVSYSCRFTETNRFVQERSLSHPVFPKAIGELHGHTGIARLLLFYSRALFGLV 896
            +  E+  PLPK  DP VQ++GNF+PV E PV   L   G++P C++GVY+RNGANP+  P+AGHH FDGDGM+HAV       VSYSCR+T+TNR VQE +L   VFPK IGELHGH+G+ARL LF +RA  GLV
Sbjct:   83 IPMEQNRPLPKPTDPAVQLSGNFAPVNECPVQNGLEVVGQIPSCLKGVYIRNGANPMFPPLAGHHLFDGDGMIHAVSIGFDNQVSYSCRYTKTNRLVQETALGRSVFPKPIGELHGHSGLARLALFTARAGIGLV 217          
BLAST of FC878450 vs. ExPASy Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.032e-20
Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = 3
Query:  537 PTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFVQERSLSHPVFPKAIGELHGHTGI 851
            P   + GNF PV E P  ++LP  G +PDC+ G +VR G NP   PVAG+H+FDGDGM+H ++   G  +Y  RF ET+R  QE       F K IG+L G  G+
Sbjct:   47 PHHYLTGNFGPVTETPPTKDLPVKGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVETSRLKQEEYFGRSKFMK-IGDLKGLFGL 150          
BLAST of FC878450 vs. ExPASy Swiss-Prot
Match: CCD_CROSA (Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.348e-20
Identity = 49/116 (42.24%), Postives = 71/116 (61.21%), Query Frame = 3
Query:  537 PTVQIAGNFSPV-PEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFVQERSLSHPVFPKAIGELHGHTGIARLLLFYSRA 881
            P   ++GNF+PV  E P C +LP  G +P+C+ G +VR G NP   PVAG+H+FDGDGM+H ++   G  +Y+ R+ +T+R  QE     P F K IG+L G  G+  + +   RA
Sbjct:   48 PCHYLSGNFAPVVDETPPCPDLPVRGHLPECLNGEFVRVGPNPKFMPVAGYHWFDGDGMIHGMRIKDGKATYASRYVKTSRLKQEEYFEGPKFMK-IGDLKGFFGLFMVQMQLLRA 162          
BLAST of FC878450 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.321e-19
Identity = 49/112 (43.75%), Postives = 69/112 (61.61%), Query Frame = 3
Query:  549 IAGNFSPVP-EKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFVQERSLSHPVFPKAIGELHGHTGIARLLLFYSRA 881
            ++GNF+PV  E P  ++L   G +PDC+ G +VR G NP   PVAG+H+FDGDGM+H ++   G  SY  RF +T+RF QE   +   F K IG+L G  G+  + +   RA
Sbjct:   48 LSGNFAPVKDETPPVKDLTVQGHLPDCLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKASYVSRFVKTSRFKQEEYFNGSKFMK-IGDLKGLFGLLMVNMQMLRA 158          
The following BLAST results are available for this feature:
BLAST of FC878450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
NCED3_ARATH2.514e-5979.109-cis-epoxycarotenoid dioxygenase NCED3, chloropla... [more]
NCED1_PHAVU4.288e-5969.239-cis-epoxycarotenoid dioxygenase NCED1, chloropla... [more]
NCED9_ARATH4.740e-5878.039-cis-epoxycarotenoid dioxygenase NCED9, chloropla... [more]
NCED2_ARATH7.832e-5359.179-cis-epoxycarotenoid dioxygenase NCED2, chloropla... [more]
NCED5_ARATH5.076e-5261.29Probable 9-cis-epoxycarotenoid dioxygenase NCED5, ... [more]
NCED1_MAIZE1.868e-4666.679-cis-epoxycarotenoid dioxygenase 1, chloroplastic... [more]
NCED6_ARATH9.596e-4359.269-cis-epoxycarotenoid dioxygenase NCED6, chloropla... [more]
CCD1_PHAVU1.032e-2045.71Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD_CROSA1.348e-2042.24Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Cr... [more]
CCD1_PEA3.321e-1943.75Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA49BF10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA49BF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878450 ID=FC878450; Name=FC878450; organism=Citrus clementina; type=EST; length=898bp
CTCTGAATAGTCAATACTCAAAAGCACTTAAACGTTAAGCGATTCCCTGA
AAATCTTACAGTCCTACTTAACTCGCATTACAAGTTTACAACTACTCCCG
CTGCTACTACTAGAAGTGCTTCTTCTTCAAATACACTTGCGAAAATAGAG
AATCAATCCTCATGGCGGCAGCAACTACTACTTCTTCACTCATAGACTTG
GGCTCTTGTAAAGATTCTTGTTCTTCTCCGTCTTTTTCTTCTTCAAGAGC
AAGAATGGCTTTTAGTTTAAAAAAGCCCACCGAAATCACTTGCTCTCTTC
AAACACCTTCCATTCTTCATTTCCCCAAGCAGTCCCCAAAATACCCTCCA
TCACCTGCAGCTTCCCCTCCTCCATCTTCTCCTCCTCTTACAACTAAGCA
GCAACCCAAGGAAAATGACAATTTCGCCCCTTCAAAATGGAACTTCTTAC
AAAAAGCAGCAGCTTTAGCCTTGGACGCAGTCGAAAACGCATTGGTTTCT
CAAGAGCGTCAGCATCCTCTCCCCAAAACAGCCGACCCCACCGTCCAAAT
CGCCGGAAACTTCTCTCCGGTGCCCGAAAAACCCGTCTGCCAGAACCTTC
CCACTACCGGAAAGGTCCCCGACTGCATTCAAGGCGTCTACGTCAGAAAC
GGAGCCAACCCACTTCACGAACCGGTCGCCGGCCACCATTTCTTCGACGG
AGACGGCATGGTTCATGCAGTCAAATTCAACAAAGGCTCTGTCAGCTATT
CTTGTCGTTTCACTGAAACAAACCGTTTTGTTCAAGAACGTAGCTTAAGC
CACCCCGTATTCCCCAAAGCCATTGGCGAGCTTCACGGCCACACGGGCAT
CGCAAGATTGCTTCTCTTCTACAGCAGAGCGCTCTTCGGTCTCGTTGA
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