FC878451

Overview
NameFC878451
Unique NameFC878451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length871
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC878451 vs. ExPASy Swiss-Prot
Match: ESCA_ARATH (Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.047e-46
Identity = 106/228 (46.49%), Postives = 133/228 (58.33%), Query Frame = 2 
Query:  287 GTASRYVHHQLHRPDLH------------------------LQHQPADDSEEHDXXXXXXXXXHRVGGAQFSDGSDHHQGLDLVNAAGNSGGHGDIVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQP---------AAAGAIVTLHGRFEILSLSGSFLPPPAPPGGTSLTIFLAGGQGQVVGG 871
            G ASRY H+ L RP++H                         Q QP+DDS E D                 S+   H QG    +   +S   G    +RPRGRPPGSKNK KPP+I+TR+S N LR+H+LEV  G D+ + V+ YARRR RG+ +L G+GTV+NV++RQP         +  G +VTLHGRFEILSL+G+ LPPPAPPG   L+IFLAGGQGQVVGG
Sbjct:    9 GGASRYFHN-LFRPEIHHQQLQPQGGINLIDQHHHQHQQHQQQQQPSDDSRESDH----------------SNKDHHQQGRPDSDPNTSSSAPG----KRPRGRPPGSKNKAKPPIIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPAPPGAGGLSIFLAGGQGQVVGG 215
The following BLAST results are available for this feature:
BLAST of FC878451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ESCA_ARATH3.047e-4646.49Putative DNA-binding protein ESCAROLA OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA100AE09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA100AE09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878451 ID=FC878451; Name=FC878451; organism=Citrus clementina; type=EST; length=871bp
CACTCGATCCTCGTCGTTGCTGTTTTTGTTTTTCTTATTCATAAATAAAC
AAATTTCTCTCTATTCAAATTAAATCAATTCATCGAGTCCCGAAGCTTTC
CTCCTTTCCCTTTCTTTAATTACTCTTCTTTTATATATAATTTTTCTCAC
CACTTCCCCTCAACTTAGCTTAAAATAAACAAATTTAACCCCTAAAACAG
TTTTTAATTTTAATTTTAATTTTAATCTTTTTTTTCTTTTTCGGGTTTTC
CTTTTGTTTGATGTTGGCATGGCCGGTTTGGATTTAGGCACAGCTTCTCG
CTACGTTCATCATCAGCTCCATAGACCTGACCTTCACCTTCAGCATCAAC
CTGCTGATGATTCAGAAGAGCACGACAACAACAACAACAACAACAACAAC
AACCATCGCGTAGGTGGGGCCCAGTTCTCGGATGGAAGTGATCACCACCA
AGGCCTTGACCTCGTCAACGCTGCCGGCAACTCAGGCGGCCATGGAGACA
TCGTCGCCCGGAGGCCCAGAGGCCGTCCCCCCGGCTCCAAGAACAAACCA
AAACCTCCAGTTATAATCACACGCGAGAGCGCCAACACGCTCCGGGCCCA
CATTCTTGAAGTGGGAAACGGCTGTGATGTATTCGACTGCGTTGCCAATT
ACGCCAGGAGAAGGCAGCGTGGAATCTGCATACTCAGTGGAAGCGGGACG
GTCACTAACGTCAGCATTAGACAACCAGCTGCAGCAGGAGCGATAGTCAC
TCTTCATGGAAGATTCGAGATACTTTCTCTGTCAGGTTCTTTCTTACCAC
CACCCGCTCCTCCAGGTGGCACAAGCTTGACAATTTTTCTAGCCGGTGGT
CAAGGGCAAGTCGTGGGGGGG
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