FC878455

Overview
NameFC878455
Unique NameFC878455
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length857
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878455 vs. ExPASy Swiss-Prot
Match: GH35_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.783e-28
Identity = 81/245 (33.06%), Postives = 120/245 (48.98%), Query Frame = 2
Query:  104 EDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGSSNENLSQLIRHS--SPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENG 832
            E+ + + E  T++A R Q +TL+ ILE  +   YLQ +  G     DA +YK  +PL  ++D   +I ++  GD      P++  +P+     SSGT+  KPK IP+ D  L         + S A   R +P      K L F+Y   +  TK G     A+    +    +   + I+    SP EVI G +F   +YCHLLCGL   E +  +FS +A  L+ AF  FE  WE LC D+ +G
Sbjct:    7 EETINEFEMLTRDAARVQKDTLKKILEINASAEYLQNF--GLGGRTDAESYKSCIPLCVHNDIEPYIQRIVDGD----TSPVVTGEPITNLSLSSGTTHGKPKFIPFNDELLETTLQ--IYRTSYAFRNREYPIGQ--GKALQFVYGSKQVITKGGILATTATTNLYRRQRYKEGMKDIQSQCCSPDEVIFGPDFHQSLYCHLLCGLIYSEEVHSVFSTFAHSLVHAFQTFEEVWEDLCTDIRDG 241          
BLAST of FC878455 vs. ExPASy Swiss-Prot
Match: GH33_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.3 OS=Oryza sativa subsp. japonica GN=GH3.3 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 4.443e-26
Identity = 83/251 (33.07%), Postives = 125/251 (49.80%), Query Frame = 2
Query:   86 IDMMTDEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGSSNENLSQLIRHS--SPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENG 832
            +D ++ E ++++ E  T++A   Q ETL+ IL    GV YL+    G     D AT++  VPL+ + D   +I+++A GD      P+L   P      SSGT+  K K +  F+  L K+  QI  + S A   R FP ++   K L FIYS  +T TK G     A+    +    +   + I+    SP EVI G +F   +YCHLL GL     +  + + +A  ++ AF  FE  WE LC D+  G
Sbjct:   12 VDGVSGEAVIEEFERVTRDAANVQRETLRRILAENGGVEYLRGL--GLAGATDPATFRARVPLATHADLEPYIDRIADGDAS----PVLTAKPATSISLSSGTTQGKRKYL-LFNEELVKSTMQI-YRISYAFRNREFPVEN--GKALQFIYSSRETRTKGGLTATTATTNVYRSEEFKATMRDIQSQCCSPDEVIFGPDFAQSLYCHLLAGLLAAGDVQIVSATFAHSVVLAFQTFERAWEDLCADIRRG 252          
BLAST of FC878455 vs. ExPASy Swiss-Prot
Match: GH37_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.7 OS=Oryza sativa subsp. japonica GN=GH3.7 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.892e-22
Identity = 71/258 (27.52%), Postives = 121/258 (46.90%), Query Frame = 2
Query:   83 PIDMMTDEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAA--TYKRTVPLSCYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVN------KILFFIYSDNKTTTKAGFKVMAASAFPLQGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENG 832
            P D+    D++ +L   T +A   Q   L+ IL R SG  YL+ +L G     D     +KR VP+S Y+D   +++++A G  G+    LL  DP+ C   SSGTS  + KL+P     L +     A+Q  V  +        D +        L F +  ++T +    +    + +  +     ++    + +SP E I+    +  MYC LLCGL +   +D + + +A GL+    F E+ WE++C ++ +G
Sbjct:   10 PADVRAGRDLIHRL---TADAAGIQRGVLREILSRNSGTEYLRRFLGGAAGDDDDVRDAFKRRVPVSGYEDVKPYVDRVASG--GEPSSALLCSDPITCLSRSSGTSGGQQKLLPSTAEELDRKVFFYAVQALVRNMSLHTDHGEDDDGGGGEGMYLMFAFHGDRTLSGLPIQSALTTYYHSRQFQECDIGGFDKCTSPLEAILCPYGEQSMYCQLLCGLLHRCRVDRVGASFAAGLVRGIKFLENHWEEMCFNIRSG 262          
BLAST of FC878455 vs. ExPASy Swiss-Prot
Match: GH312_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.12 OS=Oryza sativa subsp. japonica GN=GH3.12 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.083e-22
Identity = 74/251 (29.48%), Postives = 114/251 (45.42%), Query Frame = 2
Query:  101 DEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGSSNENLSQLIRHSSPR-------EVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENG 832
            DE+I+   E +T++A   Q ETL+ IL   +GV YL+    G     DA +++  VP+  + D   +I ++A GD      P+L   P+     SSGT+  K K + + D  L  +        S A   R FP +    ++L F+Y     TTK G          L+  S E  + +   S PR       EV+   +F   +YCHLLCGL     +  + + +A  ++ A    E  W +LC D+  G
Sbjct:   14 DEEIMAWFERTTRDAADVQRETLRRILAENAGVEYLREL--GLAGLTDAGSFRARVPVVTHADLDPYIQRVADGDAS----PVLTAKPVTAISLSSGTTQGKRKRLLFNDDLLRSSIR--FFHASYAFTNRAFPVED--GRVLQFMYGSRHETTKGGLTATTVMTNLLR--SEEFTASMAARSRPRLPSCSPSEVVFSPDFDESLYCHLLCGLLLAGEVRAVSASFAHSIVVALQALERVWRELCADIRRG 252          
BLAST of FC878455 vs. ExPASy Swiss-Prot
Match: GH36_ARATH (Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.523e-21
Identity = 71/250 (28.40%), Postives = 119/250 (47.60%), Query Frame = 2
Query:  113 LKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGF--KVMAASAFPLQGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITE 856
            L+ +ED T NA   Q   L+ IL R + V YL+ +  G     D  T+K  +P+  Y+D    IN++A GD  Q    +L  +P+  F  SSGTS  + KL+P  +  L + +   ++   V      F P  D  K ++F++  +++ T  G   + +  S +      N        ++SP + I+ S+    MY  +LCGL  ++ +  + + +A G I A  F E  W +L  D+  G    +IT+
Sbjct:   25 LQFIEDVTTNADDVQRRVLEEILSRNADVEYLKRH--GLEGRTDRETFKHIMPVVTYEDIQPEINRIANGDKSQ----VLCSNPISEFLTSSGTSGGERKLMPTIEEELDRRSLLYSLLMPVM---DQFVPGLDKGKGMYFLFIKSESKTPGGLPARPVLTSYYKSSHFKNRPYDPYTNYTSPNQTILCSDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIKFLEKHWPELARDIRTGTLSSEITD 265          
BLAST of FC878455 vs. ExPASy Swiss-Prot
Match: GH34_ARATH (Indole-3-acetic acid-amido synthetase GH3.4 OS=Arabidopsis thaliana GN=GH3.4 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.303e-21
Identity = 68/252 (26.98%), Postives = 124/252 (49.21%), Query Frame = 2
Query:   83 PIDMMTDEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPY-LSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAI-LRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENG 832
            P    T+   LK +E+ T+N    Q + L  IL R S   YL+ + L+G    +D  ++K  VP+  Y+D    I +++ GD      P+L+  P+  F  SSGTS+ + KL+P  +  +++      + G++ + +  L+ P  D  K L+F++  +++TT  G     A     +            ++SP+E I+  +    MY  +LCGL     ++ + + +  GL+ A SF ++ W++L  D+  G
Sbjct:   14 PTTSETEVKALKFIEEITRNPDSVQEKVLGEILSRNSNTEYLKRFDLNGA---VDRKSFKSKVPVVIYEDLKTDIQRISNGDRS----PILSSHPITEFLTSSGTSAGERKLMPTIEEDINRRQ----LLGNLLMPVMNLYVPGLDKGKGLYFLFVKSESTTSGGLPARPALTSYYKSDYFRTSDSDSVYTSPKEAILCCDSSQSMYTQMLCGLLMRHEVNRLGAVFPSGLLRAISFLQNNWKELSQDISTG 254          
BLAST of FC878455 vs. ExPASy Swiss-Prot
Match: GH310_ORYSJ (Putative indole-3-acetic acid-amido synthetase GH3.10 OS=Oryza sativa subsp. japonica GN=GH3.10 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.340e-21
Identity = 67/247 (27.13%), Postives = 117/247 (47.37%), Query Frame = 2
Query:  101 DEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGC---CAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENG 832
            D + L+ +E+ T N    Q   L  IL R +   YL      C    +  D AT++  VP++ YDD   ++ ++A GD      P+L+  P++ FF SSGTS+ + KL+P     +++     ++  SV     ++ P     K L+F+++ ++T T  G     A     +   +E+  +   ++SP   I+  +    MY  +LCGL     +  + + +A  L+ A  F +  W QL  D+E G
Sbjct:   28 DVENLRLIEELTSNVDAVQERVLAEILGRNADAEYLDK----CGLDASDTDRATFRAKVPVASYDDLKPYVKRIANGDRS----PILSTHPIIEFFTSSGTSAGERKLMPIVTDEMARREVLSSLATSVL---NVYVPGLHTGKGLYFLFARSETKTPGGLTAQPALTSVYK---SEHFKRAYAYTSPMAAILCEDASQSMYAQMLCGLCQRHDVLRVGAVFAAALVRAIRFLQLNWAQLAADIETG 260          
BLAST of FC878455 vs. ExPASy Swiss-Prot
Match: GH38_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.635e-20
Identity = 70/246 (28.46%), Postives = 115/246 (46.75%), Query Frame = 2
Query:  101 DEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGF--KVMAASAFPLQGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENG 832
            D + L+ +++ T N    Q   L  IL R +G  YL     G     D A ++  VP+  YDD   +I ++A GD      P+L+  P+  F  SSGTS+ + KL+P     L +     ++   V     L+ P  D  K L+F++  ++T T  G   + +  S +      N        ++SP   I+ ++    MY  ++CGL     +  + + +A GL+ A  F +  WEQL DD+E+G
Sbjct:   26 DVEKLRFIDEMTTNVDAVQERVLGEILGRNAGTEYLTK--CGLDGATDRAAFRAKVPVVSYDDLQPYIQRIANGDRS----PILSTHPVSEFLTSSGTSAGERKLMPTIMDELDRRQLLYSLLMPVM---NLYVPGLDKGKGLYFLFVKSETKTPGGLTARPVLTSYYKSDHFKNRPYDPYHNYTSPTAAILCADAFQSMYAQMVCGLCQRNDVLRLGAVFASGLLRAIRFLQLNWEQLADDIESG 262          
BLAST of FC878455 vs. ExPASy Swiss-Prot
Match: GH38_ORYSI (Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. indica GN=GH3.8 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.635e-20
Identity = 70/246 (28.46%), Postives = 115/246 (46.75%), Query Frame = 2
Query:  101 DEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPYLSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGF--KVMAASAFPLQGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENG 832
            D + L+ +++ T N    Q   L  IL R +G  YL     G     D A ++  VP+  YDD   +I ++A GD      P+L+  P+  F  SSGTS+ + KL+P     L +     ++   V     L+ P  D  K L+F++  ++T T  G   + +  S +      N        ++SP   I+ ++    MY  ++CGL     +  + + +A GL+ A  F +  WEQL DD+E+G
Sbjct:   26 DVEKLRFIDEMTTNVDAVQERVLGEILGRNAGTEYLTK--CGLDGATDRAAFRAKVPVVSYDDLQPYIQRIANGDRS----PILSTHPVSEFLTSSGTSAGERKLMPTIMDELDRRQLLYSLLMPVM---NLYVPGLDKGKGLYFLFVKSETKTPGGLTARPVLTSYYKSDHFKNRPYDPYHNYTSPTAAILCADAFQSMYAQMVCGLCQRNDVLRLGAVFASGLLRAIRFLQLNWEQLADDIESG 262          
BLAST of FC878455 vs. ExPASy Swiss-Prot
Match: GH32_ARATH (Indole-3-acetic acid-amido synthetase GH3.2 OS=Arabidopsis thaliana GN=GH3.2 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.758e-20
Identity = 70/247 (28.34%), Postives = 118/247 (47.77%), Query Frame = 2
Query:  101 DEDILKKLEDSTKNATRHQLETLQSILERQSGVRYLQPY-LSGCCAPIDAATYKRTVPLSCYDDYADHINQLAGGDHGQNDQPLLAVDPLVCFFYSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGF--KVMAASAFPLQGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENG 832
            D   LK +E+ T+N    Q + L  IL R S   YL+ + L G    +D  T+K  VP+  Y+D    I +++ GD      P+L+  P+  F  SSGTS+ + KL+P  +  L +     ++   V     L+ P  D  K L+F++  +++ T  G   + +  S +               ++SP E I+ S+    MY  +LCGL     +  + + +A GL+ A SF ++ W++L  D+  G
Sbjct:   20 DVKALKFIEEMTRNPDSVQEKVLGEILTRNSNTEYLKRFDLDGV---VDRKTFKSKVPVVTYEDLKPEIQRISNGDCS----PILSSHPITEFLTSSGTSAGERKLMPTIEEDLDRRQLLYSLLMPVM---NLYVPGLDKGKGLYFLFVKSESKTSGGLPARPVLTSYYKSDHFKRRPYDPYNVYTSPNEAILCSDSSQSMYAQMLCGLLMRHEVLRLGAVFASGLLRAISFLQNNWKELARDISTG 256          
The following BLAST results are available for this feature:
BLAST of FC878455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
GH35_ORYSJ2.783e-2833.06Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH33_ORYSJ4.443e-2633.07Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH37_ORYSJ3.892e-2227.52Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH312_ORYSJ5.083e-2229.48Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH36_ARATH2.523e-2128.40Indole-3-acetic acid-amido synthetase GH3.6 OS=Ara... [more]
GH34_ARATH4.303e-2126.98Indole-3-acetic acid-amido synthetase GH3.4 OS=Ara... [more]
GH310_ORYSJ7.340e-2127.13Putative indole-3-acetic acid-amido synthetase GH3... [more]
GH38_ORYSJ1.635e-2028.46Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH38_ORYSI1.635e-2028.46Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH32_ARATH4.758e-2028.34Indole-3-acetic acid-amido synthetase GH3.2 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA56DA01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA56DA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878455 ID=FC878455; Name=FC878455; organism=Citrus clementina; type=EST; length=857bp
CCCTGTTCCAAAAGCTGTTCATGCTAAGCTGCCCCGTCCCGTGAGCATAC
CACGATACCATAAACCGCGGCCACTACCGTTCCCGATAGATATGATGACC
GACGAAGACATCCTGAAGAAGCTCGAGGACTCCACAAAAAACGCCACGCG
TCACCAGCTCGAGACTCTGCAGTCAATCCTCGAACGCCAAAGCGGCGTAC
GTTATCTCCAACCCTACCTCTCAGGCTGCTGTGCGCCGATCGACGCGGCA
ACTTACAAGCGCACAGTGCCGTTGTCTTGCTACGATGACTACGCTGATCA
CATCAATCAATTGGCCGGTGGCGATCACGGTCAAAATGATCAACCTCTGC
TGGCCGTTGATCCCTTAGTATGCTTCTTTTACAGTTCTGGGACAAGTTCA
ATGAAGCCAAAATTGATTCCATATTTTGACTCAGCACTTTCAAAAGCTGC
TTCACAAATAGCTATTCAAGGCAGCGTTGCAATTCTTCGAAGGTTGTTTC
CTCCGAAACATGATGTTAATAAGATCTTATTTTTCATTTACTCCGACAAT
AAAACAACAACAAAAGCTGGATTTAAAGTTATGGCTGCGTCTGCTTTTCC
TTTGCAAGGTAGTAGTAACGAAAACTTGTCTCAACTTATCCGTCATTCTA
GTCCGCGTGAAGTCATTGTTGGATCAAATTTTCAGCACCAAATGTACTGC
CACCTTCTTTGCGGTCTAAGGAATTATGAATTTATCGATGGAATTTTTTC
TCCTTATGCTATAGGATTAATTGGAGCATTTAGTTTTTTTGAATCTAAGT
GGGAGCAGCTATGTGATGATCTTGAAAATGGGTACCCGTGTTTGGATATT
ACTGAGG
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