FC878457

Overview
NameFC878457
Unique NameFC878457
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length797
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878457 vs. ExPASy Swiss-Prot
Match: U550_NEMVE (UPF0550 protein v1g238755 OS=Nematostella vectensis GN=v1g238755 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.590e-19
Identity = 68/254 (26.77%), Postives = 116/254 (45.67%), Query Frame = 3
Query:   75 LASAGTATDGMQLCIFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVM---------VVEKGKDSDAIWRIDALRK----VLKEVHSLFVMFYGSIRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDDTINLFTYAVPRLSPNALSS 797
            +A+  T    +   IF+   G  EG+E +KI+ + P +     ++  IGL E L+ FT  F+P+  CE +  ++   +FY+ E D WM+M         + + GK++      D L      VLK+ + +F +F G    + E      L +   Y F + YL      + L   SF D L     +Q L + +   +++QS V++++        Y+  L+ D LV + L  +D   L+ Y V  L P  + S
Sbjct:    1 MAAMKTTPGLVNFFIFNSTYGPREGEEHEKIILYIPTEEDIDRKIKTIGLCEALVKFTETFAPDKPCESLHTQKSRQIFYQPEPDFWMIMTISIPFSEKIAKDGKNTIEYHYDDVLDNVLDAVLKQSYKMFKLFNGPFNYLSETYGREALKKRSEY-FFLSYL------QTLNFSSF-DLLDIFAGIQFLPLDKNTFLKIQSFVNLIEHTFSQIK-YTAFLYSDKLVWSGLEQEDMRILYKYLVTSLFPATIDS 245          
BLAST of FC878457 vs. ExPASy Swiss-Prot
Match: CG028_HUMAN (UPF0550 protein C7orf28 OS=Homo sapiens GN=C7orf28A PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.777e-17
Identity = 64/235 (27.23%), Postives = 112/235 (47.66%), Query Frame = 3
Query:  117 IFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVV------EKGKDSDAIWRID-------ALRKVLKEVHSLFVMFYGSIRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDDTINLFTYAVPRLSP 782
            I++ R G  EGQE +KILF+ P ++  + ++  +GL E ++ FTR FSP    + +  +++   F E E + WMVMVV      ++ KD   +               VL++ +S++ +F G+    +E D    L++  L  F   YL      + L L S  D L   G +    + +   +++QS ++ ++    N   Y+  L++D L+ + L  DD   L+ Y    L P
Sbjct:   29 IYNPRFGPREGQEENKILFYHPNEVEKNEKIRNVGLCEAIVQFTRTFSPSKPAKSLHTQKNRQFFNEPEENFWMVMVVRNPIIEKQSKDGKPVIEYQEEELLDKVYSSVLRQCYSMYKLFNGTFLKAME-DGGVKLLKERLEKFFHRYL------QTLHLQSC-DLLDIFGGISFFPLDKMTYLKIQSFINRMEESL-NIVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFP 254          
BLAST of FC878457 vs. ExPASy Swiss-Prot
Match: CG028_MOUSE (UPF0550 protein C7orf28 homolog OS=Mus musculus PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.178e-16
Identity = 63/235 (26.81%), Postives = 112/235 (47.66%), Query Frame = 3
Query:  117 IFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVV------EKGKDSDAIWRID-------ALRKVLKEVHSLFVMFYGSIRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDDTINLFTYAVPRLSP 782
            I++ R G  EG+E +KILF+ P ++  + ++  +GL E ++ FTR FSP    + +  +++   F E E + WMVMVV      ++ KD  A+               VL++ +S++ +F G+    +E D    L++  L  F   YL      + L L S  D L   G +    + +   +++QS ++ ++        Y+  L++D L+ + L  DD   L+ Y    L P
Sbjct:   27 IYNPRFGPREGEEENKILFYHPNEVEKNEKIRNVGLCEAIVQFTRTFSPSKPAKSLHTQKNRQFFNEPEENFWMVMVVRNPIIEKQSKDGKAVVEYQEEELLDKVYSSVLQQCYSMYKLFNGTFLKAME-DGGVKLLKERLEKFFHRYL------QTLHLQSC-DLLDIFGGISFFPLDKMTYLKIQSFINRMEESLSVVK-YTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFP 252          
BLAST of FC878457 vs. ExPASy Swiss-Prot
Match: CG028_CHICK (UPF0550 protein C7orf28 homolog OS=Gallus gallus GN=RCJMB04_5g18 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.178e-16
Identity = 68/257 (26.46%), Postives = 119/257 (46.30%), Query Frame = 3
Query:   69 MGLASAGTATDGMQLC-------IFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVV-----EKGKDSDAIWRID-------ALRKVLKEVHSLFVMFYGSIRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDDTINLFTYAVPRLSP 782
            M  A+A  A    QL        I++ + G  EG+E  KILF+ P ++  + ++  +GL E ++ FTR FSP    + +  +++   F+E E + WMVMVV     EK KD   ++              VL++ +S++ +F G+    +E D    +++  L  F   YL      + L L S  D L     +    + +   +++QS ++ ++    N   Y+  L++D L+ + L  DD   L+ Y    L P
Sbjct:    1 MATAAAAGAGQEKQLAPTLLSFFIYNPKLGPKEGEEEKKILFYHPNEVEKNEKIRNVGLCEAIVQFTRTFSPTKPAKSLHTQKNRQFFHEPEENFWMVMVVRNPIIEKHKDGKPVYEYQEEELLDKVYSSVLQQCYSMYKLFNGTFLKAME-DGGVKVLKERLEKFFHRYL------QTLHLQSC-DLLDVFCGISFFPLDKMTYLKIQSFINRMEESL-NIVKYTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFP 248          
BLAST of FC878457 vs. ExPASy Swiss-Prot
Match: CG028_BOVIN (UPF0550 protein C7orf28 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.178e-16
Identity = 64/236 (27.12%), Postives = 115/236 (48.73%), Query Frame = 3
Query:  117 IFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVV------EKGKDSDAIWRID-------ALRKVLKEVHSLFVMFYGS-IRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDDTINLFTYAVPRLSP 782
            I++ R G  EG+E +KILF++P ++  + ++  +GL E ++ FTR FSP    + +  +++   F E E + WMVMVV      ++ KD   +               VL++ +S++ +F G+ +RAM  +D    L++  L  F   YL      + L L S  D L   G +    + +   +++QS ++ ++        Y+  L++D L+ + L  DD   L+ Y    L P
Sbjct:   27 IYNPRFGPREGEEENKILFYYPNEVEKNEKIRNVGLCEAIVQFTRTFSPSKPAKSLHTQKNRQFFNEPEENFWMVMVVRNPIIEKQSKDGKPVVEYQEEELLDKVYSSVLQQCYSMYKLFNGTFLRAM--EDGGVKLLKERLEKFFHRYL------QTLHLQSC-DLLDIFGGISFFPLDKMTYLKIQSFINRMEESLSIVK-YTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFP 252          
BLAST of FC878457 vs. ExPASy Swiss-Prot
Match: U550_DICDI (UPF0550 protein OS=Dictyostelium discoideum GN=DDB_G0288589 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.715e-16
Identity = 59/230 (25.65%), Postives = 110/230 (47.83%), Query Frame = 3
Query:  117 IFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVVEK-----GKDSDAIWRID-----ALRKVLKEVHSLFVMFYGSIRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLD---SCAGNSSCYSMILFHDLLVSTTLSPDDTINLFTYAV 767
            I+  + GQ EG E +KILFF+P  +    Q + +G+SE  + FT+ FSP   CE I  ++ +      E DIWMV+ V       GKD+   +  D      L K +++++  +  F GSI ++  K  S   +R  L  F+  Y+      +++Q     D       ++ L + +   + +   ++ +D       +S  + ++L+ D L+ ++L  ++T  L+ Y +
Sbjct:   15 IYCSKLGQKEGTEHEKILFFYPPTINIGEQTNSVGISEAYVLFTKQFSPGQPCEFIHTKKSTLALLHPEEDIWMVLSVYNPTGITGKDNKREYIEDEVDDIILMKTIQQIYQTWQTFNGSIMSLASK-TSYDNVRKRLESFVKPYI------QQIQFDQL-DLFTSLDGIKFLPLNKNVYLTIFGYINSVDLHFQSTLSSFRFGLVLYKDNLILSSLEQNETRILYNYLI 236          
BLAST of FC878457 vs. ExPASy Swiss-Prot
Match: CG028_XENLA (UPF0550 protein C7orf28 homolog OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.365e-15
Identity = 63/234 (26.92%), Postives = 113/234 (48.29%), Query Frame = 3
Query:  117 IFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVV-----EKGKDSDAI--WRIDAL-----RKVLKEVHSLFVMFYGSIRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDDTINLFTYAVPRLSP 782
            I++ + G  EG+E  KILF+ P ++  + ++  +GL E ++ FTR F+P    + +  +++   F+E E   WMVMVV     EK KD   +  ++ D L       VL++ + ++ +F G+    +E      L++  L  F   YL      + L L S  D L   G +    + +   ++VQS ++ ++    N   Y+  L++D L+ + L  +D   L+ Y    L P
Sbjct:   19 IYNPKFGPREGEEEKKILFYHPNEVEQNEKIRNVGLCEAIVQFTRTFNPTKPAKSLHTQKNRQFFHEPEEGFWMVMVVKNPVAEKQKDGKTVLEYQEDELLDKVYSSVLQQCYRMYKLFNGTFGRAMEVG-QVELLKDRLEKFFHRYL------QTLHLHSC-DLLDVFGGISFFPLDKMTYLKVQSFINRIEESL-NIVKYTAFLYNDQLIWSGLEQEDMRILYKYLTTTLFP 243          
BLAST of FC878457 vs. ExPASy Swiss-Prot
Match: CG028_XENTR (UPF0550 protein C7orf28 homolog OS=Xenopus tropicalis GN=TGas077n04.1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.151e-15
Identity = 61/234 (26.07%), Postives = 114/234 (48.72%), Query Frame = 3
Query:  117 IFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVV-----EKGKDSDAI--WRIDAL-----RKVLKEVHSLFVMFYGSIRAMLEKDPSGGLIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDDTINLFTYAVPRLSP 782
            I++ + G  EG+E  KILF+ P ++  + ++  +GL E ++ FTR F+P    + +  +++   F+E E   WMVMVV     EK K+   +  ++ D L       VL++ + ++ +F G+    +E      L++  L  F   YL      + L L S  D L   G +    + +   +++QS ++ ++    N   Y++ L++D L+ + L  +D   L+ Y    L P
Sbjct:   19 IYNPKFGPREGEEEKKILFYHPNEVEKNEKIRNVGLCEAIVQFTRTFNPTKPAKSLHTQKNRQFFHEPEEGFWMVMVVKNPLAEKQKEGKTVLEYQEDELLDKVYSSVLQQCYRMYKLFNGTFSRAMEVG-QVELLKDRLEKFFHRYL------QTLHLHSC-DLLDVFGGISFFPLDKMTYLKIQSFINRIEESL-NIVKYTVFLYNDQLIWSGLEQEDMRILYKYLTTTLFP 243          
BLAST of FC878457 vs. ExPASy Swiss-Prot
Match: CG028_TETNG (UPF0550 protein C7orf28 homolog OS=Tetraodon nigroviridis GN=GSTENG00024165001 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.195e-14
Identity = 61/238 (25.63%), Postives = 113/238 (47.48%), Query Frame = 3
Query:  117 IFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVV---------EKGKDSDAIWRIDAL-----RKVLKEVHSLFVMFYGSIRAMLEKDPSGG--LIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDDTINLFTYAVPRLSP 782
            I++   G  EG+E  KILF+ P+D+  + ++  +GL E ++ FTR F P    + +  +++   F+E E + W+VMVV         + GK     ++ + +       V+++ +S++ +F G+    +E   +GG  L+   L  F   YL      + L L S  D L   G +    + +   +++QS V+ ++        Y+  L++D L+ + L  DD   L+ Y    L P
Sbjct:   26 IYNPTFGPREGEEEKKILFYHPSDVEKNEKIRNVGLCEAIVQFTRTFCPTKPAKSLHTQKNRQFFFEPENNFWIVMVVRNPMIEKPNKDGKSQTIEYQEEEILDTVYGAVVRQCYSMYKLFNGTFARAME---TGGVELLMQKLEKFFYKYL------QTLHLQS-SDLLDVFGGISFFPLDKMTYLKIQSFVNRVEESLSLVK-YTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFP 252          
BLAST of FC878457 vs. ExPASy Swiss-Prot
Match: CG028_DANRE (UPF0550 protein C7orf28 homolog OS=Danio rerio GN=zgc:55344 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.039e-14
Identity = 64/238 (26.89%), Postives = 114/238 (47.90%), Query Frame = 3
Query:  117 IFDLRRGQNEGQELDKILFFFPADLPFSTQLSVIGLSEGLITFTRIFSPEAACEIIEAERHSHVFYEAETDIWMVMVV---------EKGKDSDAIWR----IDAL-RKVLKEVHSLFVMFYGSIRAMLEKDPSGG--LIRSHLYPFIMDYLSDFPVGKKLQLPSFRDCLKERGTVQMLTMGREAAIEVQSLVSVLDSCAGNSSCYSMILFHDLLVSTTLSPDDTINLFTYAVPRLSP 782
            I++ + G  EG+E  KILF+ P ++  + ++  +GL E ++ FTR F P    + +  +++   F+E E + WMVMVV         + GK     ++    ID++   VL++ +S++ +F G+     E   +GG  L+   L  F   YL      + L L S  D L   G +    + +   +++QS V+ ++        Y+  L++D L+ + L  DD   L+ Y    L P
Sbjct:   26 IYNPKFGPREGEEEKKILFYHPIEIEKNEKIRNVGLCEAIVQFTRTFCPTKPAKSLHTQKNRQFFHEPEENYWMVMVVRNPMVEKPNKDGKPPTVEYQEEEIIDSVYGSVLQQCYSMYKLFNGTFSRAFE---AGGVELLTQKLEKFFYRYL------QTLHLQSC-DLLDVFGGISFFPLDKMTYLKIQSFVNRVEESLSLVK-YTAFLYNDQLIWSGLEQDDMRILYKYLTTSLFP 252          
The following BLAST results are available for this feature:
BLAST of FC878457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
U550_NEMVE3.590e-1926.77UPF0550 protein v1g238755 OS=Nematostella vectensi... [more]
CG028_HUMAN9.777e-1727.23UPF0550 protein C7orf28 OS=Homo sapiens GN=C7orf28... [more]
CG028_MOUSE2.178e-1626.81UPF0550 protein C7orf28 homolog OS=Mus musculus PE... [more]
CG028_CHICK2.178e-1626.46UPF0550 protein C7orf28 homolog OS=Gallus gallus G... [more]
CG028_BOVIN2.178e-1627.12UPF0550 protein C7orf28 homolog OS=Bos taurus PE=2... [more]
U550_DICDI3.715e-1625.65UPF0550 protein OS=Dictyostelium discoideum GN=DDB... [more]
CG028_XENLA5.365e-1526.92UPF0550 protein C7orf28 homolog OS=Xenopus laevis ... [more]
CG028_XENTR9.151e-1526.07UPF0550 protein C7orf28 homolog OS=Xenopus tropica... [more]
CG028_TETNG1.195e-1425.63UPF0550 protein C7orf28 homolog OS=Tetraodon nigro... [more]
CG028_DANRE2.039e-1426.89UPF0550 protein C7orf28 homolog OS=Danio rerio GN=... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA94CF10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878457 ID=FC878457; Name=FC878457; organism=Citrus clementina; type=EST; length=797bp
ATCAATCTGAGAGCATTCAGCAGCTCGATTTTTTCAATTCATTTCGCAGT
TTATGAATTGGAAAACTTATGGGTTTGGCATCGGCTGGCACTGCTACTGA
TGGTATGCAATTATGCATATTTGACTTGAGAAGGGGACAAAATGAAGGGC
AGGAGCTAGACAAGATTTTGTTTTTCTTCCCTGCTGATTTGCCCTTTTCA
ACACAACTTTCTGTGATAGGACTCAGCGAAGGACTTATCACATTTACAAG
AATTTTCTCACCGGAAGCTGCATGTGAAATCATAGAAGCCGAGAGGCACT
CTCATGTTTTCTATGAAGCAGAAACAGATATCTGGATGGTGATGGTGGTG
GAGAAAGGTAAGGATTCAGATGCCATATGGCGCATTGATGCATTACGCAA
GGTTCTTAAGGAAGTTCACTCTCTTTTTGTGATGTTTTATGGATCTATAA
GAGCAATGCTTGAGAAAGACCCTAGTGGTGGACTAATACGATCTCATTTG
TACCCTTTCATCATGGATTATCTAAGTGATTTTCCTGTTGGGAAGAAACT
CCAGTTACCCTCATTCCGTGACTGTTTGAAGGAGCGTGGAACTGTACAAA
TGCTGACCATGGGGCGGGAGGCTGCGATTGAAGTTCAGTCACTTGTCAGT
GTACTGGATTCTTGTGCTGGGAACTCATCTTGCTACTCAATGATTTTATT
TCACGATCTTCTGGTGTCCACAACACTTTCTCCTGATGACACCATAAACT
TATTTACATATGCTGTTCCTAGGTTAAGCCCAAATGCTCTATCCTCG
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