FC878462

Overview
NameFC878462
Unique NameFC878462
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length880
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878462 vs. ExPASy Swiss-Prot
Match: WRK40_ARATH (Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.750e-60
Identity = 142/273 (52.01%), Postives = 168/273 (61.54%), Query Frame = 3
Query:   93 SFSWVDTSLDLNSNPLRLNDEVLAPAKKELQGDFSGFGNKDSVKQETGALVAELNRVSAENKKLTETLTALCESYNALRNQLMDYMSKNPEISKEVFIXXXXXXXXXXXXXXXXVALTMGNSESSSTDEES--CKKPREEHI-KAKISRVHYRTEPSDTTSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPLPCQMDAAS---------GSTSRCVTAGSVPCSTGQTITLDLTRSNNKSS 875
            S S VDTSLDL     R+  E   P                     T ALV ELNRVSAENKKL+E LT +C++YN LR QLM+Y++K+  I++   I                 A+  G SESSSTD++   CKK REE + K K+SRV+Y+TE SDTT LVVKDGYQWRKYGQKVTRDNPSPRAYFKC+ APSC VKKKVQRSVEDQSVLVATYEGEHNHP+P Q+D+ +         GS S  V A      T    T+D+  S   +S
Sbjct:    5 SSSLVDTSLDLTIGVTRMRVEEDPP---------------------TSALVEELNRVSAENKKLSEMLTLMCDNYNVLRKQLMEYVNKS-NITERDQISPPKKRKSPAREDAFSCAVIGGVSESSSTDQDEYLCKKQREETVVKEKVSRVYYKTEASDTT-LVVKDGYQWRKYGQKVTRDNPSPRAYFKCACAPSCSVKKKVQRSVEDQSVLVATYEGEHNHPMPSQIDSNNGLNRHISHGGSASTPVAANRRSSLTVPVTTVDMIESKKVTS 254          
BLAST of FC878462 vs. ExPASy Swiss-Prot
Match: WRK18_ARATH (WRKY transcription factor 18 OS=Arabidopsis thaliana GN=WRKY18 PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 6.001e-50
Identity = 123/259 (47.49%), Postives = 152/259 (58.69%), Query Frame = 3
Query:   87 MDSFSWVDTSLDLNSNPLRLNDEVLAPAKKELQGDFSGFGNKDSVKQETGA--LVAELNRVSAENKKLTETLTALCESYNALRNQLMDYMSKNPEISKEVFIXXXXXXXXXXXXXXXXVALTMGNSESSSTDEE---------------SCKKPREEHI-KAKISRVHYRTEPSDTTSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNH--PLPCQMDAASGSTSRCVT 803
            MD  S++D SLDLN+NP           KKE+    S    +  ++Q+  A  L  ELNRV++ENKKLTE L  +CESYN L N L    S+     ++  I                + L+ G +E+SS++E+               SCK+P  +   KAK+S V+  TE SDT SL VKDG+QWRKYGQKVTRDNPSPRAYF+CSFAPSCPVKKKVQRS ED S+LVATYEG HNH  P   + DA S   S  VT
Sbjct:    1 MDGSSFLDISLDLNTNPFSAK-----LPKKEVSVLASTHLKRKWLEQDESASELREELNRVNSENKKLTEMLARVCESYNELHNHLEKLQSRQSPEIEQTDIPIKKRKQDPDEFLGFPIGLSSGKTENSSSNEDHHHHHQQHEQKNQLLSCKRPVTDSFNKAKVSTVYVPTETSDT-SLTVKDGFQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPSLLVATYEGTHNHLGPNASEGDATSQGGSSTVT 253          
BLAST of FC878462 vs. ExPASy Swiss-Prot
Match: WRK60_ARATH (Probable WRKY transcription factor 60 OS=Arabidopsis thaliana GN=WRKY60 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.811e-38
Identity = 101/217 (46.54%), Postives = 126/217 (58.06%), Query Frame = 3
Query:  120 DLNSNPLRLNDEVLAPAKKELQGDFSGFGNKD-SVKQET-GALVAELNRVSAENKKLTETLTALCESYNALRNQLMDYMS-KNPE-ISKEVFIXXXXXXXXXXXXXXXXVALTMGNSESSSTDEESCKKPREEHIKAKISRVHYRTEPSDTTSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPLP 758
            D N+NP  L+     P K+E+    S    K   VK E    L  E+NRV++ENKKLTE L  +CE Y AL N + +  S K+PE ++ +                   + L++G  E+ + D            KA +S  ++  E SDT SL VKDGYQWRKYGQK+TRDNPSPRAYF+CSF+PSC VKKKVQRS ED S LVATYEG HNH  P
Sbjct:    4 DPNTNPFDLHFSGKLP-KREVSASASKVVEKKWLVKDEKRNMLQDEINRVNSENKKLTEMLARVCEKYYALNNLMEELQSRKSPESVNFQNKQLTGKRKQELDEFVSSPIGLSLGPIENITND------------KATVSTAYFAAEKSDT-SLTVKDGYQWRKYGQKITRDNPSPRAYFRCSFSPSCLVKKKVQRSAEDPSFLVATYEGTHNHTGP 206          
BLAST of FC878462 vs. ExPASy Swiss-Prot
Match: WRKY6_ARATH (WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.681e-25
Identity = 90/323 (27.86%), Postives = 145/323 (44.89%), Query Frame = 3
Query:  105 VDTSLDLNSNPLRLNDEVLAPAKKELQGDFSGFGNKDSVKQETGALVAELNRVSAENKKLTETLTALCESYNALRNQLMDYMSKNPEISKEVFIXXXXXXXXXXXXXXXXVALT--MGNSE--SSSTDEESCKKP---------------REEHIKAKISRVHYRTEPSDTT---------------------SLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPLP---CQMDAASGSTSRCVTAGS------------------VPCSTGQ----------TITLDLTRS 860
            V+T L+L +     +DE +        G+ S   +K + K E   L  EL +++ +N+KL E LT +  SY +L+  L+  M +  + + +V                  +  T  +G +E  S+S+ E+  +                 REE  + + +++      + TT                     + ++ DG QWRKYGQK+ + NP PRAY++C+ A  CPV+K+VQR  ED+S+L+ TYEG HNHPLP     M + + + +  + +GS                  +PCST            T+TLDLT S
Sbjct:  121 VNTGLNLRTTGNTKSDESMID-----DGESSEMEDKRA-KNELVKLQDELKKMTMDNQKLRELLTQVSNSYTSLQMHLVSLMQQQQQQNNKVIEAAEKPEETIVPRQFIDLGPTRAVGEAEDVSNSSSEDRTRSGGSSAAERRSNGKRLGREESPETESNKIQKVNSTTPTTFDQTAEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMATGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAVAMASTTTAAANMLLSGSMSSHDGMMNPTNLLARAVLPCSTSMATISASAPFPTVTLDLTHS 437          
BLAST of FC878462 vs. ExPASy Swiss-Prot
Match: WRK47_ARATH (Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.260e-23
Identity = 76/242 (31.40%), Postives = 108/242 (44.63%), Query Frame = 3
Query:  213 DSVKQETGALVAELNRVSAENKKLTETLTALCESYNALRN--------QLMDYMSKNPEISKEVFIXXXXXXXXXXXXXXXXVALTMGN---------------------SESSSTDEESCKKPREEHIKAKISRVHYRTEPSDTTSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPLPCQMDAASGSTSRC---VTAGSVPCSTGQTIT 842
            D  K +   L  EL R+  EN KL   L  + ESYN L+         Q+     K  E   +                    A T+                        ++ ST+ E  + P ++ +  + +RV  R     TT   V DG QWRKYGQK+ + NP PRAY++C+ A  CPV+K+VQR  ED ++L  TYEG HNHPLP    A + +TS     + +GS   +  QT++
Sbjct:   93 DKTKTQISRLKLELERLHEENHKLKHLLDEVSESYNDLQRRVLLARQTQVEGLHHKQHEDVPQAGSSQALENRRPKDMNHETPATTLKRRSPDDVDGRDMHRGSPKTPRIDQNKSTNHEEQQNPHDQ-LPYRKARVSVRARSDATT---VNDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDTTILTTTYEGNHNHPLPPSATAMAATTSAAAAMLLSGSSSSNLHQTLS 330          
BLAST of FC878462 vs. ExPASy Swiss-Prot
Match: WRK31_ARATH (Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.067e-22
Identity = 64/170 (37.65%), Postives = 91/170 (53.53%), Query Frame = 3
Query:  450 GNSESSSTDEESCKKPREEHIKAKISRVHYRTEPSDTTSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPLPCQMDAASGSTSRCVT---AGS------------------VPCSTGQ----------TITLDLTRSNN 866
            GN   +  D+ + +       KA++S V  R+E +     ++ DG QWRKYGQK+ + NP PRAY++C+ A  CPV+K+VQR  ED+S+L+ TYEG HNHPLP    A + +T+   +   +GS                  +PCS+            TITLDLT S N
Sbjct:  264 GNRNGNVIDQSAAEATMR---KARVS-VRARSEAA-----MISDGCQWRKYGQKMAKGNPCPRAYYRCTMAGGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAATAMASTTTAAASMLLSGSMSSQDGLMNPTNLLARAILPCSSSMATISASAPFPTITLDLTNSPN 424          
BLAST of FC878462 vs. ExPASy Swiss-Prot
Match: WRKY9_ARATH (Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.819e-22
Identity = 74/250 (29.60%), Postives = 109/250 (43.60%), Query Frame = 3
Query:  174 KELQGDFSGFG----NKDSVKQETGALVAELNRVSAENKKLTETLTALCESYNALRNQLMDYMSKNPEISKEVFIXXXXXXXXXXXXXXXXVALTMGNSESSSTDEESC------KKPREEHIKAKISRVHYRTEPSDTT-------------------------SLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPLPCQMDAASGSTSRCVTAGSVP 818
            KE + D S  G     +++ ++E   L  ++  V  EN +L + +    E Y  L  +    + K  ++  E+F+                 A   G   S S + E        KK ++E  K  +   H R   S                            +  + DG QWRKYGQK  + NP PRAY++C+ AP CPV+K+VQR +ED S+L+ TYEG HNHPLP       G+T+   TA + P
Sbjct:   71 KEDEDDSSSLGLRTREEENEREELLQLQIQMESVKEENTRLRKLVEQTLEDYRHLEMKF-PVIDKTKKMDLEMFLGVQGKRCVDITSK----ARKRGAERSPSMEREIGLSLSLEKKQKQEESKEAVQSHHQRYNSSSLDMNMPRIISSSQGNRKARVSVRARCETATMNDGCQWRKYGQKTAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPV------GATAMASTASTSP 309          
BLAST of FC878462 vs. ExPASy Swiss-Prot
Match: WRK61_ARATH (Probable WRKY transcription factor 61 OS=Arabidopsis thaliana GN=WRKY61 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.376e-22
Identity = 51/111 (45.95%), Postives = 69/111 (62.16%), Query Frame = 3
Query:  519 KISRVHYRTEPSDTTSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPLPCQMDAASGSTSRCVTAGSVPCSTGQTITLDL 851
            K +RV  R+     T   + DG QWRKYGQK+ + NP PRAY++C+ A SCPV+K+VQR  ED S+L++TYEG HNHPLP    A + +TS   +      S+  +   DL
Sbjct:  175 KKTRVSVRSRCETPT---MNDGCQWRKYGQKIAKGNPCPRAYYRCTIAASCPVRKQVQRCSEDMSILISTYEGTHNHPLPMSATAMASATSAAASMLLSGASSSSSAAADL 282          
BLAST of FC878462 vs. ExPASy Swiss-Prot
Match: WRK42_ARATH (Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.179e-21
Identity = 64/157 (40.76%), Postives = 89/157 (56.69%), Query Frame = 3
Query:  513 KAKISRVHYRTEPSDTTSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPL-PCQMDAASGSTSRC--VTAGS-------------------VPCSTGQ----------TITLDLTRS---NNKSSN 878
            KA++S V  R+E       ++ DG QWRKYGQK+ + NP PRAY++C+ A  CPV+K+VQR  ED+++L+ TYEG HNHPL P  M+ AS +T+    + +GS                   +PCS+            TITLDLT S   NN ++N
Sbjct:  277 KARVS-VRARSEAP-----MLSDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMNMASTTTAAASMLLSGSTMSNQDGLMNPTNLLARTILPCSSSMATISASAPFPTITLDLTESPNGNNPTNN 427          
BLAST of FC878462 vs. ExPASy Swiss-Prot
Match: WRK72_ARATH (Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.224e-20
Identity = 52/133 (39.10%), Postives = 76/133 (57.14%), Query Frame = 3
Query:  498 REEHIKAKISRVHYRTEPSDTTSLVVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVEDQSVLVATYEGEHNHPLPCQMDAASGSTSRCVT---AGSVPCSTGQTI---TLDLTRSNNKSSN 878
            ++ H+K   +RV  R      T   + DG QWRKYGQK+ + NP PRAY++C+ AP CPV+K+VQR  +D S+L+ TYEG H+H LP      + +TS   +   +GS      + I     D +R NN + +
Sbjct:  206 QQNHVKR--ARVCVRARCDTPT---MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCADDMSILITTYEGTHSHSLPLSATTMASTTSAAASMLLSGSSSSPAAEMIGNNLYDNSRFNNNNKS 333          
The following BLAST results are available for this feature:
BLAST of FC878462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
WRK40_ARATH3.750e-6052.01Probable WRKY transcription factor 40 OS=Arabidops... [more]
WRK18_ARATH6.001e-5047.49WRKY transcription factor 18 OS=Arabidopsis thalia... [more]
WRK60_ARATH1.811e-3846.54Probable WRKY transcription factor 60 OS=Arabidops... [more]
WRKY6_ARATH6.681e-2527.86WRKY transcription factor 6 OS=Arabidopsis thalian... [more]
WRK47_ARATH1.260e-2331.40Probable WRKY transcription factor 47 OS=Arabidops... [more]
WRK31_ARATH1.067e-2237.65Probable WRKY transcription factor 31 OS=Arabidops... [more]
WRKY9_ARATH1.819e-2229.60Probable WRKY transcription factor 9 OS=Arabidopsi... [more]
WRK61_ARATH2.376e-2245.95Probable WRKY transcription factor 61 OS=Arabidops... [more]
WRK42_ARATH1.179e-2140.76Probable WRKY transcription factor 42 OS=Arabidops... [more]
WRK72_ARATH2.224e-2039.10Probable WRKY transcription factor 72 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA10CA03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA10CA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878462 ID=FC878462; Name=FC878462; organism=Citrus clementina; type=EST; length=880bp
AAAATTTAAGTAATACAAGTCTTTTGAGAAAATTTAAGTAATACAAGTCT
TTTGAGTAAATTTGTTCTTCTTGTTGGTCGTTAGCTATGGATTCTTTTTC
ATGGGTTGATACTTCATTGGATCTCAACTCCAACCCTCTCCGATTGAATG
ATGAAGTTCTGGCGCCGGCGAAGAAAGAATTGCAAGGCGATTTTTCTGGT
TTTGGGAACAAGGATTCTGTGAAACAAGAGACCGGAGCTTTAGTGGCGGA
ATTGAACCGCGTGAGTGCAGAAAATAAGAAGCTAACAGAAACGTTAACAG
CGTTGTGTGAGAGTTACAATGCTTTGAGAAACCAATTGATGGATTATATG
AGCAAGAATCCTGAGATTAGTAAGGAGGTTTTTATTAGTTCATCGAAGAA
ACGAAAATCCGAAAGCAGCAACAACGACAACAATGTTGCGCTAACAATGG
GAAATTCTGAAAGCAGTTCTACTGATGAAGAATCTTGCAAGAAACCAAGG
GAAGAACACATCAAGGCAAAGATTTCGAGAGTTCATTATAGGACCGAGCC
ATCTGATACCACCAGCCTTGTTGTGAAAGATGGATATCAATGGAGGAAAT
ACGGACAAAAGGTCACTAGAGATAATCCTTCTCCTAGAGCTTACTTCAAA
TGCTCTTTCGCTCCAAGCTGCCCAGTTAAAAAGAAGGTACAAAGAAGTGT
TGAGGACCAATCTGTATTGGTAGCGACTTACGAGGGGGAGCACAACCATC
CACTTCCGTGTCAAATGGACGCAGCATCCGGTTCAACAAGCCGTTGTGTG
ACGGCCGGTTCGGTCCCCTGCTCGACCGGACAAACCATCACTCTTGATCT
CACAAGGTCTAATAATAAGTCCAGCAACGA
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