FC878471

Overview
NameFC878471
Unique NameFC878471
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length837
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC878471 vs. ExPASy Swiss-Prot
Match: EID1_ARATH (Phytochrome A-associated F-box protein OS=Arabidopsis thaliana GN=EID1 PE=1 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 7.071e-61
Identity = 127/252 (50.40%), Postives = 149/252 (59.13%), Query Frame = 1 
Query:  151 MAETLFSKLSDDVVLNIFFKLEDDPRNWARLACVCVKFSSLVRNICWKTKCSKSIPAVVADLI---------------SPNSGVPPGGWSSLHKLSVCCPGLLHAGVLLENSDFGLERELGPDSDYQSCXXXXXXXXXXXXXXXXXXXNLNSVTDCSWSLFDDLYYDTV--------YDKSESHXXXXXXXXSLXXXXXXXXXXXXGGESAKKRKICRSFRSHLASGVWNLCREQGNKLLASRFRGDCLYIC 837
            MAE++FS + +DVV NIFFKL+DDPRNWARLACVC KFSS+VRN+C KT+C  +IP V++DL+               + +S  PPGGW+SL+KL+VCCPGL HAG+LLENSDFGLERELGPD +                        L   T   WSL+DDLY DT+         D  E                             K+RKICRS  SHLASG WNL REQGNKLLASRFRGDCLYIC
Sbjct:    1 MAESVFSCIPEDVVFNIFFKLQDDPRNWARLACVCTKFSSIVRNVCCKTQCYSAIPTVISDLLPLPPSAAASASSSTAADSSLTPPGGWASLYKLAVCCPGLFHAGILLENSDFGLERELGPDQNLDPKPTTTDLALNDEEVSKPVGSGLE--TTSFWSLYDDLYTDTIPAPPPEDSIDDQEEEIETSEIRPGRDLPV------------RKRRKICRSLGSHLASGGWNLSREQGNKLLASRFRGDCLYIC 238
The following BLAST results are available for this feature:
BLAST of FC878471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EID1_ARATH7.071e-6150.40Phytochrome A-associated F-box protein OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA94CF12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA94CF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878471 ID=FC878471; Name=FC878471; organism=Citrus clementina; type=EST; length=837bp
CGCCCTTTGATTCAAAACTAAAACGATTGGCAGCCAAGCAATTTCACTGT
CGCTGTCTCTCTCTTTTCTAAGAATCAAGACCACCAAAGAAAGAACCGGA
GAGAACAAACAATTCTATCGCAAATTCACTTGATTCGATTCTTTCTTAGA
ATGGCAGAAACCTTATTCTCAAAGCTCTCTGACGACGTCGTGCTGAACAT
CTTCTTCAAACTGGAAGATGATCCAAGAAACTGGGCCCGCTTAGCTTGCG
TCTGCGTCAAATTCTCTTCTCTCGTTCGCAACATCTGCTGGAAGACCAAG
TGCTCCAAGTCCATTCCTGCCGTTGTCGCTGATCTCATCTCCCCGAATTC
TGGCGTTCCGCCCGGTGGCTGGTCATCCCTCCACAAGCTTTCCGTCTGCT
GCCCCGGCCTCCTTCACGCCGGCGTTCTCTTGGAGAATTCGGATTTCGGC
CTCGAGCGCGAGCTGGGCCCCGACTCTGATTATCAAAGTTGCAGCACGAG
CGCCATTCAACCGACGTCGACAACGACAACGGCCGAGGCTTGCTCCAGCA
ATCTAAATTCTGTTACTGATTGTTCTTGGTCACTTTTTGATGATCTTTAT
TACGATACTGTTTATGATAAATCCGAGTCACATGATGATGATGGTGGTGG
TGATGGTAGCTTAGTTGTTGAGGATGTCGACAAGTGTGAGGTTAAAGTGG
GTGGCGAATCCGCAAAGAAGAGGAAGATATGTAGATCATTTAGGTCTCAT
TTGGCATCTGGGGTTTGGAATTTGTGTCGTGAGCAGGGGAATAAATTGCT
TGCGAGTAGATTCAGAGGGGATTGTTTATACATTTGT
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