FC878476

Overview
NameFC878476
Unique NameFC878476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length867
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878476 vs. ExPASy Swiss-Prot
Match: APXS_ARATH (L-ascorbate peroxidase S, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=APXS PE=1 SV=2)

HSP 1 Score: 376.711 bits (966), Expect = 9.212e-104
Identity = 178/214 (83.18%), Postives = 198/214 (92.52%), Query Frame = 3
Query:  228 RRSSVNRGY-STVATTKCAASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGWGKPETKYTKDGPGAPGGQSWT 866
            R +SVNR + ST A TK ++SDPDQLK+AREDI+ELL + FCHPILVRLGWHDAGTY+KNI+EWP+RGGAN SLRF++ELKHAANAGLVNAL LI+ IK+KYSG++YADLFQLASATAIEEAGGPKIPMKYGRVD SGPE CPEEGRLP AGPPSPA HLR VFYRMGL+DK+IVALSGAHT+GRSRPERSGWGKPETKYTK+GPGAPGGQSWT
Sbjct:   82 RIASVNRSFNSTTAATKSSSSDPDQLKNAREDIKELLSTKFCHPILVRLGWHDAGTYNKNIKEWPQRGGANGSLRFDIELKHAANAGLVNALNLIKDIKEKYSGISYADLFQLASATAIEEAGGPKIPMKYGRVDASGPEDCPEEGRLPDAGPPSPATHLREVFYRMGLDDKDIVALSGAHTLGRSRPERSGWGKPETKYTKEGPGAPGGQSWT 295          
BLAST of FC878476 vs. ExPASy Swiss-Prot
Match: APX6_ORYSJ (Probable L-ascorbate peroxidase 6, chloroplastic OS=Oryza sativa subsp. japonica GN=APX6 PE=2 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.522e-98
Identity = 172/207 (83.09%), Postives = 188/207 (90.82%), Query Frame = 3
Query:  249 GYSTVATTKCAASDPD-QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGWGKPETKYTKDGPGAPGGQSWT 866
            G    +++  AA D   +L+ ARED+++LLKST CHPILVRLGWHDAGTYDKNI EWP+ GGAN SLRFE+ELKHAANAGLVNALKLIQPIKDK++GVTYADLFQLASATAIEEAGGPKIPM YGRVDV+ PEQCP EGRLPAAGPPSPAEHLR VFYRMGL+DKEIVALSGAHT+GRSRPERSGWGKPETKYTK+GPGAPGGQSWT
Sbjct:   25 GRRPASSSAAAAGDAAAELRGAREDVKQLLKSTSCHPILVRLGWHDAGTYDKNITEWPKCGGANGSLRFEIELKHAANAGLVNALKLIQPIKDKHAGVTYADLFQLASATAIEEAGGPKIPMIYGRVDVAAPEQCPPEGRLPAAGPPSPAEHLREVFYRMGLSDKEIVALSGAHTLGRSRPERSGWGKPETKYTKNGPGAPGGQSWT 231          
BLAST of FC878476 vs. ExPASy Swiss-Prot
Match: APXT_ARATH (L-ascorbate peroxidase T, chloroplastic OS=Arabidopsis thaliana GN=APXT PE=2 SV=2)

HSP 1 Score: 357.066 bits (915), Expect = 7.553e-98
Identity = 168/216 (77.78%), Postives = 190/216 (87.96%), Query Frame = 3
Query:  219 ISQRRSSVNRGYSTVATTKCAASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGWGKPETKYTKDGPGAPGGQSWT 866
            + Q++  +N   + + + KCAASD  QL SA+EDI+ LL++ FCHPILVRLGWHDAGTY+KNIEEWP RGGAN SLRFE ELKHAANAGL+NALKLIQP+KDKY  ++YADLFQLASATAIEEAGGP IPMKYGRVDV  PEQCPEEGRLP AGPPSPA+HLR+VFYRMGL+DKEIVALSGAHT+GR+RP+RSGWGKPETKYTK GPG  GGQSWT
Sbjct:   59 VLQKKHPINGTSTRMISPKCAASDAAQLISAKEDIKVLLRTKFCHPILVRLGWHDAGTYNKNIEEWPLRGGANGSLRFEAELKHAANAGLLNALKLIQPLKDKYPNISYADLFQLASATAIEEAGGPDIPMKYGRVDVVAPEQCPEEGRLPDAGPPSPADHLRDVFYRMGLDDKEIVALSGAHTLGRARPDRSGWGKPETKYTKTGPGEAGGQSWT 274          
BLAST of FC878476 vs. ExPASy Swiss-Prot
Match: APX8_ORYSJ (Probable L-ascorbate peroxidase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=APX8 PE=2 SV=2)

HSP 1 Score: 357.066 bits (915), Expect = 7.553e-98
Identity = 167/202 (82.67%), Postives = 183/202 (90.59%), Query Frame = 3
Query:  261 VATTKCAASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGWGKPETKYTKDGPGAPGGQSWT 866
            +A    AASD  QLKSAREDIRE+LK+T+CHPI+VRLGWHD+GTYDKNIEEWP+RGGA+ SLRF+ EL H ANAGL+NALKLIQPIKDKY G+TYADLFQLASATAIEEAGGPKIPMKYGRVDV+  EQCP EGRLP AGP  PA+HLR VFYRMGL+DKEIVALSGAHT+GRSRP+RSGWGKPETKYTKDGPG PGGQSWT
Sbjct:   78 MAAAAVAASDAAQLKSAREDIREILKTTYCHPIMVRLGWHDSGTYDKNIEEWPQRGGADGSLRFDAELSHGANAGLINALKLIQPIKDKYPGITYADLFQLASATAIEEAGGPKIPMKYGRVDVTAAEQCPPEGRLPDAGPRVPADHLREVFYRMGLDDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGEPGGQSWT 279          
BLAST of FC878476 vs. ExPASy Swiss-Prot
Match: APX7_ORYSJ (Probable L-ascorbate peroxidase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=APX7 PE=2 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 4.896e-97
Identity = 165/204 (80.88%), Postives = 184/204 (90.20%), Query Frame = 3
Query:  255 STVATTKCAASDPDQLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGWGKPETKYTKDGPGAPGGQSWT 866
            S  A +   AS   +LK+AREDIRELLK+T CHPILVRLGWHD+GTYDKNI+EWP+RGGAN SLRF+VELKH ANAGLVNALKL+QPIKDKY  ++YADLFQLASATAIEEAGGPKIPM YGR+DV+GPEQCP EG+LP AGP +PA+HLR VFYRMGL+DKEIV LSGAHT+GRSRPERSGWGKPETKYTK+GPGAPGGQSWT
Sbjct:   77 SASAASAAVASGAAELKAAREDIRELLKTTHCHPILVRLGWHDSGTYDKNIKEWPQRGGANGSLRFDVELKHGANAGLVNALKLVQPIKDKYPNISYADLFQLASATAIEEAGGPKIPMTYGRIDVTGPEQCPPEGKLPDAGPSAPADHLRKVFYRMGLDDKEIVVLSGAHTLGRSRPERSGWGKPETKYTKNGPGAPGGQSWT 280          
BLAST of FC878476 vs. ExPASy Swiss-Prot
Match: APX5_ORYSJ (Probable L-ascorbate peroxidase 5, chloroplastic OS=Oryza sativa subsp. japonica GN=APX5 PE=2 SV=1)

HSP 1 Score: 329.717 bits (844), Expect = 1.291e-89
Identity = 159/208 (76.44%), Postives = 180/208 (86.54%), Query Frame = 3
Query:  246 RGYSTVATTKCAASDPD-QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGWGKPETKYTKDGPGAPGGQSWT 866
            R  S+ ++   AA D + +L++ARED+R+LLKS  CHPILVRLGWHDAGTYDKNI EWP+ GGAN SLRF VEL HAAN GL+ AL L+ PIK KY+GVTYAD+FQLASATAIEEAGGPKIPM YGR DV+  E+CP EGRLPAA PPSPAEHLR VFYRMGL+DKEIVALSGAHT+GR+RPERSGWGKPETKYT++GPGAPGGQSWT
Sbjct:   35 RPASSSSSAAAAAGDVEAELRAAREDVRQLLKSNPCHPILVRLGWHDAGTYDKNITEWPKCGGANGSLRFGVELVHAANKGLLKALFLVIPIKSKYAGVTYADIFQLASATAIEEAGGPKIPMIYGRADVADGEECPPEGRLPAADPPSPAEHLREVFYRMGLSDKEIVALSGAHTLGRARPERSGWGKPETKYTENGPGAPGGQSWT 242          
BLAST of FC878476 vs. ExPASy Swiss-Prot
Match: APX3_ORYSJ (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. japonica GN=APX3 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.399e-43
Identity = 94/175 (53.71%), Postives = 118/175 (67.43%), Query Frame = 3
Query:  297 QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGWGKPETK 821
            +++ AR D+R L+ S  C PI++RL WHDAGTYDK      + GG N S+RF  E  HAANAG+  A+ L++P+K K+  +TYADL+QLA   A+E  GGP I    GR D S     PEEGRLP A     A HLR VFYRMGL+DK+IVALSG HT+G++RPERSG+    TK
Sbjct:   14 EVERARRDLRALIASKSCAPIMLRLAWHDAGTYDKAT----KTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMKQKHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRDSS---DSPEEGRLPDA--KKGAAHLREVFYRMGLSDKDIVALSGGHTLGKARPERSGFDGAWTK 179          
BLAST of FC878476 vs. ExPASy Swiss-Prot
Match: APX3_ORYSI (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. indica GN=APX3 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.117e-43
Identity = 93/175 (53.14%), Postives = 118/175 (67.43%), Query Frame = 3
Query:  297 QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGWGKPETK 821
            +++ AR D+R L+ S  C PI++RL WHDAGTYDK      + GG N S+RF  E  HAANAG+  A+ L++P+K ++  +TYADL+QLA   A+E  GGP I    GR D S     PEEGRLP A     A HLR VFYRMGL+DK+IVALSG HT+G++RPERSG+    TK
Sbjct:   14 EVERARRDLRALIASKSCAPIMLRLAWHDAGTYDKAT----KTGGPNGSIRFPQEYSHAANAGIKIAIDLLEPMKQRHPKITYADLYQLAGVVAVEVTGGPTIDYVPGRRDSS---DSPEEGRLPDA--KKGAAHLREVFYRMGLSDKDIVALSGGHTLGKARPERSGFDGAWTK 179          
BLAST of FC878476 vs. ExPASy Swiss-Prot
Match: APX4_ORYSJ (Probable L-ascorbate peroxidase 4 OS=Oryza sativa subsp. japonica GN=APX4 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.639e-42
Identity = 91/169 (53.85%), Postives = 114/169 (67.46%), Query Frame = 3
Query:  297 QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGW 803
            Q+  AR  +R L+ S  C PI++RL WHDAGTYD N     + GGAN S+R+E E  H +NAGL  A+ L++PIK K   +TYADL+QLA   A+E  GGP +    GR D S    CP EGRLP A     A HLR++FYRMGL+DK+IVALSG HT+GR+ PERSG+
Sbjct:   13 QVDRARRHLRALISSKGCAPIMLRLAWHDAGTYDVNT----KTGGANGSIRYEEEYTHGSNAGLKIAIDLLEPIKAKSPKITYADLYQLAGVVAVEVTGGPTVEFIPGRRDSS---VCPREGRLPDA--KKGALHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGF 172          
BLAST of FC878476 vs. ExPASy Swiss-Prot
Match: APX3_ARATH (L-ascorbate peroxidase 3, peroxisomal OS=Arabidopsis thaliana GN=APX3 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.213e-40
Identity = 88/175 (50.29%), Postives = 114/175 (65.14%), Query Frame = 3
Query:  297 QLKSAREDIRELLKSTFCHPILVRLGWHDAGTYDKNIEEWPRRGGANASLRFEVELKHAANAGLVNALKLIQPIKDKYSGVTYADLFQLASATAIEEAGGPKIPMKYGRVDVSGPEQCPEEGRLPAAGPPSPAEHLRNVFYRMGLNDKEIVALSGAHTVGRSRPERSGWGKPETK 821
            ++  AR ++R L+ +  C PI++RL WHDAGTYD       + GG N S+R E E  H AN+GL  AL L + +K K+  +TYADL+QLA   A+E  GGP I    GR D      CP+EGRLP A      +HLR+VFYRMGL+DK+IVALSG HT+GR+ PERSG+  P T+
Sbjct:   13 EITKARRELRSLIANKNCAPIMLRLAWHDAGTYDAQ----SKTGGPNGSIRNEEEHTHGANSGLKIALDLCEGVKAKHPKITYADLYQLAGVVAVEVTGGPDIVFVPGRKD---SNVCPKEGRLPDA--KQGFQHLRDVFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTQ 178          
The following BLAST results are available for this feature:
BLAST of FC878476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
APXS_ARATH9.212e-10483.18L-ascorbate peroxidase S, chloroplastic/mitochondr... [more]
APX6_ORYSJ1.522e-9883.09Probable L-ascorbate peroxidase 6, chloroplastic O... [more]
APXT_ARATH7.553e-9877.78L-ascorbate peroxidase T, chloroplastic OS=Arabido... [more]
APX8_ORYSJ7.553e-9882.67Probable L-ascorbate peroxidase 8, chloroplastic O... [more]
APX7_ORYSJ4.896e-9780.88Probable L-ascorbate peroxidase 7, chloroplastic O... [more]
APX5_ORYSJ1.291e-8976.44Probable L-ascorbate peroxidase 5, chloroplastic O... [more]
APX3_ORYSJ1.399e-4353.71Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX3_ORYSI3.117e-4353.14Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX4_ORYSJ2.639e-4253.85Probable L-ascorbate peroxidase 4 OS=Oryza sativa ... [more]
APX3_ARATH4.213e-4050.29L-ascorbate peroxidase 3, peroxisomal OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA56DA04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA56DA04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878476 ID=FC878476; Name=FC878476; organism=Citrus clementina; type=EST; length=867bp
CTCGGCCAGCGTCACTGACACAACAACAGATACGACTGCAATCAAAATCA
CAATCACCGATGGCTTCCTCTTTGAGCACCGCCGCTTCTTCTCGCCTTCT
TTGCTCCACCACCGCCGCCGCCGCCGCAGCTGCTAAGCTTTCTTTCTCTT
CCGCTTCTTCACTCTCTTTCTCTCTCTCCTCCTCTTCCTCCCTCAAATGC
CTCAGATTCTCTCCTCTCATCAGCCAGAGGAGATCGTCTGTGAACAGAGG
ATATAGCACCGTAGCTACGACGAAATGTGCGGCGTCGGATCCTGATCAGT
TGAAGAGTGCTAGAGAAGATATTAGGGAGCTTCTCAAGTCTACATTTTGC
CATCCTATTTTGGTTCGTCTAGGATGGCATGATGCTGGTACTTATGACAA
GAACATTGAGGAGTGGCCTCGAAGGGGAGGAGCTAATGCAAGTCTTAGAT
TTGAGGTTGAGCTAAAACACGCAGCCAATGCTGGGCTTGTGAATGCATTG
AAACTGATTCAACCTATCAAGGACAAATATTCCGGTGTCACATATGCTGA
CTTATTCCAGTTGGCTAGCGCTACTGCTATAGAGGAAGCCGGGGGTCCTA
AGATCCCAATGAAGTATGGAAGAGTGGATGTCTCAGGACCTGAGCAGTGC
CCTGAAGAAGGAAGGCTTCCCGCTGCTGGGCCTCCATCACCTGCTGAACA
TTTAAGAAATGTCTTTTATAGAATGGGATTAAATGACAAGGAAATAGTTG
CCTTATCTGGTGCACACACAGTGGGAAGGTCTAGACCTGAACGAAGTGGT
TGGGGCAAGCCAGAAACAAAGTACACGAAAGATGGACCAGGAGCACCTGG
TGGGCAGTCCTGGACGG
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