FC878478

Overview
NameFC878478
Unique NameFC878478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length760
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878478 vs. ExPASy Swiss-Prot
Match: RAP1_ARATH (Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.598e-29
Identity = 68/181 (37.57%), Postives = 107/181 (59.12%), Query Frame = 2
Query:    5 IVQNRPEWWVYSIFWQPLKDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEVQ-VHFGEDMDLDRMVDGDVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLF 544
            +++   E W Y+IFWQP  D +G  VL WGDGY++G +D A           + P    +  RKKV +E+  +  G     D  VD +VTD EW++ VS+T+SFA G G + G+ F++G+ VW++G  +L    CER K+  + G+ T+ C+ +A GVVE+GS++ I++   L+   + LF
Sbjct:   75 LIEGTHEGWTYAIFWQPSYDFSGASVLGWGDGYYKGEEDKANPRRRSSSPPFSTPADQEY--RKKVLRELNSLISGGVAPSDDAVDEEVTDTEWFFLVSMTQSFACGAG-LAGKAFATGNAVWVSGSDQLSGSGCERAKQGGVFGMHTIACIPSANGVVEVGSTEPIRQSSDLINKVRILF 252          
BLAST of FC878478 vs. ExPASy Swiss-Prot
Match: BH004_ARATH (Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.685e-26
Identity = 64/188 (34.04%), Postives = 107/188 (56.91%), Query Frame = 2
Query:    5 IVQNRPEWWVYSIFWQPL-------KDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEVQ-VHFGEDMDLDRMVDGDVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLF 544
            +++   E W Y++FWQ          + N  ++L WGDGY++G ++ + +  +    A  +        RK+V +E+  +  G     D   D +VTD EW++ VS+T+SF  G G + G+ FS+ D +WL+G + L    CER ++ +++G+QT+VCV+T  GVVELGSS++I +   LV    + F
Sbjct:   70 LIEGANENWTYAVFWQSSHGFAGEDNNNNNTVLLGWGDGYYKGEEEKSRKKKSNPASAAEQE------HRKRVIRELNSLISGGVGGGDEAGDEEVTDTEWFFLVSMTQSFVKGTG-LPGQAFSNSDTIWLSGSNALAGSSCERARQGQIYGLQTMVCVATENGVVELGSSEIIHQSSDLVDKVDTFF 250          
BLAST of FC878478 vs. ExPASy Swiss-Prot
Match: ATR2_ARATH (Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.236e-23
Identity = 62/186 (33.33%), Postives = 102/186 (54.84%), Query Frame = 2
Query:    5 IVQNRPEWWVYSIFWQPLKDVNGR-----LVLSWGDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEVQVHFGEDMDL-DRMVDGDVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLF 544
            ++++  E W Y+IFWQ   D +       ++L WGDGY++G +D        K+   N         RK+V +E+       + + D   D +VTD EW++ VS+T+SF  G G + G  F +   +WL+G   L    CER  + +++G++T+VC++T  GVVELGSS++I +   L+    +LF
Sbjct:   59 LIESAGENWTYAIFWQISHDFDSSTGDNTVILGWGDGYYKGEED--------KEKKKNNTNTAEQEHRKRVIRELNSLISGGIGVSDESNDEEVTDTEWFFLVSMTQSFVNGVG-LPGESFLNSRVIWLSGSGALTGSGCERAGQGQIYGLKTMVCIATQNGVVELGSSEVISQSSDLMHKVNNLF 235          
BLAST of FC878478 vs. ExPASy Swiss-Prot
Match: BH028_ARATH (Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.229e-18
Identity = 60/191 (31.41%), Postives = 98/191 (51.31%), Query Frame = 2
Query:    5 IVQNRPEWWVYSIFWQP-LKDVNGRLVLSWGDGYFRGSKDFATRAAAGKQG---AGNEPKFGFFLERKKVSKEVQVHFGEDM------DLDRMVDGDVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLFG 547
            ++    E W Y+IFW+P   D +G  VL WGDG + G  +  TR    ++    +  E K      R  V +E+ +    +       D+    D +VTD EW++ VS+T SF  G G + G+ F+S + V +TG   +    C+R K+    G+QT++C+ +  GV+EL S++ I+ +  L    + LFG
Sbjct:   41 VLNGTHEPWSYAIFWKPSYDDFSGEAVLKWGDGVYTGGNEEKTRGRLRRKKTILSSPEEKE----RRSNVIRELNLMISGEAFPVVEDDVSDDDDVEVTDMEWFFLVSMTWSFGNGSG-LAGKAFASYNPVLVTGSDLIYGSGCDRAKQGGDVGLQTILCIPSHNGVLELASTEEIRPNSDLFNRIRFLFG 226          
BLAST of FC878478 vs. ExPASy Swiss-Prot
Match: GL3_ARATH (Transcription factor GLABRA 3 OS=Arabidopsis thaliana GN=GL3 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.702e-16
Identity = 56/185 (30.27%), Postives = 84/185 (45.41%), Query Frame = 2
Query:   29 WVYSIFWQPLKDVNGRLVLSWGDGYFRGSKDFATRAA-------AGKQGAGNEPKFGFFLERKKVSKEVQVHFGEDMDLDRMVDG------DVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLF 544
            W Y IFW      +G  VL WGDGY+ G  D  TR         A + G     +     E   V++           + R          D+ D EWYY V ++  F IG+G + GR F++G+ +WL   H        R   A+   ++T+VC     GVVE+G+++ I ED +++Q  K+ F
Sbjct:   27 WSYGIFWSVSASQSG--VLEWGDGYYNG--DIKTRKTIQASEIKADQLGLRRSEQLSELYESLSVAESSSSGVAAGSQVTRRASAAALSPEDLADTEWYYLVCMSFVFNIGEG-MPGRTFANGEPIWLCNAHTADSKVFSRSLLAKSAAVKTVVCFPFLGGVVEIGTTEHITEDMNVIQCVKTSF 206          
BLAST of FC878478 vs. ExPASy Swiss-Prot
Match: BH014_ARATH (Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.006e-15
Identity = 58/193 (30.05%), Postives = 87/193 (45.08%), Query Frame = 2
Query:    2 FIVQNRPEWWVYSIFWQPL-KDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEVQVHFGEDMDLDRMVDGDVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLFGPVIATMLTKQ 577
            F+V+  P+ W Y IFWQ +  D + R  L W DG+F G+K+                           +   + +    ++ + M+DG   D E +Y  S       G+     +  S    VWLTG  EL+    ER KEA  HG+ TLV +    G++ELGSS+ I ++ + +   KS+FG    T  T Q
Sbjct:   41 FVVETSPDRWAYVIFWQKMFDDQSDRSYLVWVDGHFCGNKN---------------------------NNSQENYTTNSIECELMMDGG-DDLELFYAASF-----YGEDRSPRKEVSDESLVWLTGPDELRFSNYERAKEAGFHGVHTLVSIPINNGIIELGSSESIIQNRNFINRVKSIFGSGKTTKHTNQ 200          
BLAST of FC878478 vs. ExPASy Swiss-Prot
Match: TT8_ARATH (Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.515e-15
Identity = 58/178 (32.58%), Postives = 87/178 (48.88%), Query Frame = 2
Query:   29 WVYSIFWQPLKDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEVQVHF--GEDMDLDRMVDG----DVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLF 544
            W YS+FWQ       + VL WG+GY+ G+    TR          E      LER +  +E+      GE     R        D+T+ EW+Y + V+ SF    G + G+ ++   +VWL+G +E+      R   A+   IQT+VC+    GVVELG++  ++ED   V+L KS F
Sbjct:   33 WTYSVFWQFCPQ---QRVLVWGNGYYNGA--IKTRKTTQPAEVTAEEAA---LERSQQLRELYETLLAGESTSEARACTALSPEDLTETEWFYLMCVSFSFPPPSG-MPGKAYARRKHVWLSGANEVDSKTFSRAILAKSAKIQTVVCIPMLDGVVELGTTKKVREDVEFVELTKSFF 201          
BLAST of FC878478 vs. ExPASy Swiss-Prot
Match: BH013_ARATH (Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.452e-14
Identity = 61/173 (35.26%), Postives = 85/173 (49.13%), Query Frame = 2
Query:   29 WVYSIFWQPLKDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEVQVHFGEDMDLDRMVDGD-VTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLF 544
            W Y+IFWQ  +   G LVL WGDGY R  K+            G E +    + RK+V +++   FG   + +  +  D VTD E +   S+  SF  G+G   G+ F+S   VWL+         C R   A+  GIQT+V V T  GVVELGS+  + E    +   +SLF
Sbjct:   66 WNYAIFWQISRSKAGDLVLCWGDGYCREPKEGEKSEIVRILSMGREEETHQTM-RKRVLQKLHDLFGGSEEENCALGLDRVTDTEMFLLSSMYFSFPRGEGGP-GKCFASAKPVWLSDVVNSGSDYCVRSFLAKSAGIQTVVLVPTDLGVVELGSTSCLPESEDSILSIRSLF 236          
BLAST of FC878478 vs. ExPASy Swiss-Prot
Match: AIB_ARATH (Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.578e-13
Identity = 58/191 (30.37%), Postives = 90/191 (47.12%), Query Frame = 2
Query:   29 WVYSIFWQPLKDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGN---EPKFGFFLERKKVSKEVQVHFGEDMDLDRMVDGDVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLFGPVIA--TMLTKQVNL 586
            W Y+IFWQ     +G+ VL WGDG  R   +             N   E +    + ++ + K  ++  G D D   +    VT  E ++  S+   F  G+G   GR +SSG +VWL+     +   C R   A+  GI+T+V V T  GV+ELGS   + E+  LV+  ++LF   +    M+T   N+
Sbjct:   66 WNYAIFWQQTMSRSGQQVLGWGDGCCREPNEEEESKVVRSYNFNNMGAEEETWQDMRKRVLQKLHRLFGGSDEDNYALSLEKVTATEIFFLASMYFFFNHGEGGP-GRCYSSGKHVWLSDAVNSESDYCFRSFMAKSAGIRTIVMVPTDAGVLELGSVWSLPENIGLVKSVQALFMRRVTQPVMVTSNTNM 255          
BLAST of FC878478 vs. ExPASy Swiss-Prot
Match: BH012_ARATH (Transcription factor MYC1 OS=Arabidopsis thaliana GN=BHLH12 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.460e-11
Identity = 55/183 (30.05%), Postives = 82/183 (44.81%), Query Frame = 2
Query:   29 WVYSIFWQPLKDVNGRLVLSWGDGYFRGS-----KDFATRAAAGKQGAGNEPKFGF-FLERKKVSKEVQVHFGEDMDLDR-------MVDGDVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKS 538
            W Y+IFW       G  VL WG+G + G      K + +    G Q +    K     LE    +     H   + D D        +   D++D EWYY VS++  F+     + GR  ++G+ +WL      +     R   AR   IQT+VC     GV+ELG ++LI ED +L++  KS
Sbjct:   36 WSYAIFWSSSLTQPG--VLEWGEGCYNGDMKKRKKSYESHYKYGLQKSKELRKLYLSMLEGDSGTTVSTTHDNLNDDDDNCHSTSMMLSPDDLSDEEWYYLVSMSYVFSPSQ-CLPGRASATGETIWLCNAQYAENKLFSRSLLARSASIQTVVCFPYLGGVIELGVTELISEDHNLLRNIKS 215          
The following BLAST results are available for this feature:
BLAST of FC878478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RAP1_ARATH1.598e-2937.57Transcription factor MYC2 OS=Arabidopsis thaliana ... [more]
BH004_ARATH3.685e-2634.04Transcription factor MYC4 OS=Arabidopsis thaliana ... [more]
ATR2_ARATH2.236e-2333.33Transcription factor ATR2 OS=Arabidopsis thaliana ... [more]
BH028_ARATH8.229e-1831.41Transcription factor bHLH28 OS=Arabidopsis thalian... [more]
GL3_ARATH7.702e-1630.27Transcription factor GLABRA 3 OS=Arabidopsis thali... [more]
BH014_ARATH1.006e-1530.05Transcription factor bHLH14 OS=Arabidopsis thalian... [more]
TT8_ARATH8.515e-1532.58Transcription factor TT8 OS=Arabidopsis thaliana G... [more]
BH013_ARATH1.452e-1435.26Transcription factor bHLH13 OS=Arabidopsis thalian... [more]
AIB_ARATH3.578e-1330.37Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Ar... [more]
BH012_ARATH7.460e-1130.05Transcription factor MYC1 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA44BE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA44BE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878478 ID=FC878478; Name=FC878478; organism=Citrus clementina; type=EST; length=760bp
ATTCATTGTTCAAAACCGGCCTGAGTGGTGGGTCTATTCCATCTTCTGGC
AACCACTGAAAGACGTGAACGGCCGCCTTGTTTTATCATGGGGTGATGGC
TATTTCCGCGGGAGCAAAGATTTTGCTACAAGGGCGGCGGCAGGCAAACA
AGGCGCAGGCAACGAGCCCAAATTCGGCTTCTTTTTGGAGAGGAAGAAGG
TGAGCAAAGAGGTTCAAGTTCATTTCGGAGAGGATATGGACTTGGATAGA
ATGGTGGATGGGGATGTTACTGACGGGGAATGGTATTACACAGTGTCGGT
TACCCGTTCATTTGCAATTGGTGATGGTAGTGTTCTTGGTAGGGTGTTTA
GCTCTGGTGATTATGTGTGGCTAACTGGTGACCATGAGCTCCAACTGTAC
GAGTGTGAAAGAGTTAAAGAAGCTCGTATGCATGGGATTCAGACTTTGGT
CTGCGTTTCAACTGCTTGTGGAGTTGTTGAATTGGGCTCTTCAGATTTGA
TCAAAGAAGATTGGAGCTTGGTGCAATTAGCCAAATCTCTCTTCGGCCCT
GTCATTGCTACTATGCTCACAAAGCAAGTCAATCTTAATTCTGAGAGCCA
ACTTCAACTTCCCAATCTCACGACCAGAAATAATAATAATACTAATAATG
TTGCTCCTCTGCTAGACATTGGAATGTTCTCAGGTGCAGGCGCCCCCCAC
CACCACCACCACCATCATCAAAAAGAGTGGTCCCTTGAAGAGAATCGAAG
CAGCAGACCC
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