FC878478
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878478 vs. ExPASy Swiss-Prot
Match: RAP1_ARATH (Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2) HSP 1 Score: 129.798 bits (325), Expect = 1.598e-29 Identity = 68/181 (37.57%), Postives = 107/181 (59.12%), Query Frame = 2 Query: 5 IVQNRPEWWVYSIFWQPLKDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEVQ-VHFGEDMDLDRMVDGDVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLF 544 +++ E W Y+IFWQP D +G VL WGDGY++G +D A + P + RKKV +E+ + G D VD +VTD EW++ VS+T+SFA G G + G+ F++G+ VW++G +L CER K+ + G+ T+ C+ +A GVVE+GS++ I++ L+ + LF Sbjct: 75 LIEGTHEGWTYAIFWQPSYDFSGASVLGWGDGYYKGEEDKANPRRRSSSPPFSTPADQEY--RKKVLRELNSLISGGVAPSDDAVDEEVTDTEWFFLVSMTQSFACGAG-LAGKAFATGNAVWVSGSDQLSGSGCERAKQGGVFGMHTIACIPSANGVVEVGSTEPIRQSSDLINKVRILF 252
BLAST of FC878478 vs. ExPASy Swiss-Prot
Match: BH004_ARATH (Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.685e-26 Identity = 64/188 (34.04%), Postives = 107/188 (56.91%), Query Frame = 2 Query: 5 IVQNRPEWWVYSIFWQPL-------KDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEVQ-VHFGEDMDLDRMVDGDVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLF 544 +++ E W Y++FWQ + N ++L WGDGY++G ++ + + + A + RK+V +E+ + G D D +VTD EW++ VS+T+SF G G + G+ FS+ D +WL+G + L CER ++ +++G+QT+VCV+T GVVELGSS++I + LV + F Sbjct: 70 LIEGANENWTYAVFWQSSHGFAGEDNNNNNTVLLGWGDGYYKGEEEKSRKKKSNPASAAEQE------HRKRVIRELNSLISGGVGGGDEAGDEEVTDTEWFFLVSMTQSFVKGTG-LPGQAFSNSDTIWLSGSNALAGSSCERARQGQIYGLQTMVCVATENGVVELGSSEIIHQSSDLVDKVDTFF 250
BLAST of FC878478 vs. ExPASy Swiss-Prot
Match: ATR2_ARATH (Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.236e-23 Identity = 62/186 (33.33%), Postives = 102/186 (54.84%), Query Frame = 2 Query: 5 IVQNRPEWWVYSIFWQPLKDVNGR-----LVLSWGDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEVQVHFGEDMDL-DRMVDGDVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLF 544 ++++ E W Y+IFWQ D + ++L WGDGY++G +D K+ N RK+V +E+ + + D D +VTD EW++ VS+T+SF G G + G F + +WL+G L CER + +++G++T+VC++T GVVELGSS++I + L+ +LF Sbjct: 59 LIESAGENWTYAIFWQISHDFDSSTGDNTVILGWGDGYYKGEED--------KEKKKNNTNTAEQEHRKRVIRELNSLISGGIGVSDESNDEEVTDTEWFFLVSMTQSFVNGVG-LPGESFLNSRVIWLSGSGALTGSGCERAGQGQIYGLKTMVCIATQNGVVELGSSEVISQSSDLMHKVNNLF 235
BLAST of FC878478 vs. ExPASy Swiss-Prot
Match: BH028_ARATH (Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 8.229e-18 Identity = 60/191 (31.41%), Postives = 98/191 (51.31%), Query Frame = 2 Query: 5 IVQNRPEWWVYSIFWQP-LKDVNGRLVLSWGDGYFRGSKDFATRAAAGKQG---AGNEPKFGFFLERKKVSKEVQVHFGEDM------DLDRMVDGDVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLFG 547 ++ E W Y+IFW+P D +G VL WGDG + G + TR ++ + E K R V +E+ + + D+ D +VTD EW++ VS+T SF G G + G+ F+S + V +TG + C+R K+ G+QT++C+ + GV+EL S++ I+ + L + LFG Sbjct: 41 VLNGTHEPWSYAIFWKPSYDDFSGEAVLKWGDGVYTGGNEEKTRGRLRRKKTILSSPEEKE----RRSNVIRELNLMISGEAFPVVEDDVSDDDDVEVTDMEWFFLVSMTWSFGNGSG-LAGKAFASYNPVLVTGSDLIYGSGCDRAKQGGDVGLQTILCIPSHNGVLELASTEEIRPNSDLFNRIRFLFG 226
BLAST of FC878478 vs. ExPASy Swiss-Prot
Match: GL3_ARATH (Transcription factor GLABRA 3 OS=Arabidopsis thaliana GN=GL3 PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.702e-16 Identity = 56/185 (30.27%), Postives = 84/185 (45.41%), Query Frame = 2 Query: 29 WVYSIFWQPLKDVNGRLVLSWGDGYFRGSKDFATRAA-------AGKQGAGNEPKFGFFLERKKVSKEVQVHFGEDMDLDRMVDG------DVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLF 544 W Y IFW +G VL WGDGY+ G D TR A + G + E V++ + R D+ D EWYY V ++ F IG+G + GR F++G+ +WL H R A+ ++T+VC GVVE+G+++ I ED +++Q K+ F Sbjct: 27 WSYGIFWSVSASQSG--VLEWGDGYYNG--DIKTRKTIQASEIKADQLGLRRSEQLSELYESLSVAESSSSGVAAGSQVTRRASAAALSPEDLADTEWYYLVCMSFVFNIGEG-MPGRTFANGEPIWLCNAHTADSKVFSRSLLAKSAAVKTVVCFPFLGGVVEIGTTEHITEDMNVIQCVKTSF 206
BLAST of FC878478 vs. ExPASy Swiss-Prot
Match: BH014_ARATH (Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.006e-15 Identity = 58/193 (30.05%), Postives = 87/193 (45.08%), Query Frame = 2 Query: 2 FIVQNRPEWWVYSIFWQPL-KDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEVQVHFGEDMDLDRMVDGDVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLFGPVIATMLTKQ 577 F+V+ P+ W Y IFWQ + D + R L W DG+F G+K+ + + + ++ + M+DG D E +Y S G+ + S VWLTG EL+ ER KEA HG+ TLV + G++ELGSS+ I ++ + + KS+FG T T Q Sbjct: 41 FVVETSPDRWAYVIFWQKMFDDQSDRSYLVWVDGHFCGNKN---------------------------NNSQENYTTNSIECELMMDGG-DDLELFYAASF-----YGEDRSPRKEVSDESLVWLTGPDELRFSNYERAKEAGFHGVHTLVSIPINNGIIELGSSESIIQNRNFINRVKSIFGSGKTTKHTNQ 200
BLAST of FC878478 vs. ExPASy Swiss-Prot
Match: TT8_ARATH (Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 8.515e-15 Identity = 58/178 (32.58%), Postives = 87/178 (48.88%), Query Frame = 2 Query: 29 WVYSIFWQPLKDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEVQVHF--GEDMDLDRMVDG----DVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLF 544 W YS+FWQ + VL WG+GY+ G+ TR E LER + +E+ GE R D+T+ EW+Y + V+ SF G + G+ ++ +VWL+G +E+ R A+ IQT+VC+ GVVELG++ ++ED V+L KS F Sbjct: 33 WTYSVFWQFCPQ---QRVLVWGNGYYNGA--IKTRKTTQPAEVTAEEAA---LERSQQLRELYETLLAGESTSEARACTALSPEDLTETEWFYLMCVSFSFPPPSG-MPGKAYARRKHVWLSGANEVDSKTFSRAILAKSAKIQTVVCIPMLDGVVELGTTKKVREDVEFVELTKSFF 201
BLAST of FC878478 vs. ExPASy Swiss-Prot
Match: BH013_ARATH (Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.452e-14 Identity = 61/173 (35.26%), Postives = 85/173 (49.13%), Query Frame = 2 Query: 29 WVYSIFWQPLKDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGNEPKFGFFLERKKVSKEVQVHFGEDMDLDRMVDGD-VTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLF 544 W Y+IFWQ + G LVL WGDGY R K+ G E + + RK+V +++ FG + + + D VTD E + S+ SF G+G G+ F+S VWL+ C R A+ GIQT+V V T GVVELGS+ + E + +SLF Sbjct: 66 WNYAIFWQISRSKAGDLVLCWGDGYCREPKEGEKSEIVRILSMGREEETHQTM-RKRVLQKLHDLFGGSEEENCALGLDRVTDTEMFLLSSMYFSFPRGEGGP-GKCFASAKPVWLSDVVNSGSDYCVRSFLAKSAGIQTVVLVPTDLGVVELGSTSCLPESEDSILSIRSLF 236
BLAST of FC878478 vs. ExPASy Swiss-Prot
Match: AIB_ARATH (Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 3.578e-13 Identity = 58/191 (30.37%), Postives = 90/191 (47.12%), Query Frame = 2 Query: 29 WVYSIFWQPLKDVNGRLVLSWGDGYFRGSKDFATRAAAGKQGAGN---EPKFGFFLERKKVSKEVQVHFGEDMDLDRMVDGDVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKSLFGPVIA--TMLTKQVNL 586 W Y+IFWQ +G+ VL WGDG R + N E + + ++ + K ++ G D D + VT E ++ S+ F G+G GR +SSG +VWL+ + C R A+ GI+T+V V T GV+ELGS + E+ LV+ ++LF + M+T N+ Sbjct: 66 WNYAIFWQQTMSRSGQQVLGWGDGCCREPNEEEESKVVRSYNFNNMGAEEETWQDMRKRVLQKLHRLFGGSDEDNYALSLEKVTATEIFFLASMYFFFNHGEGGP-GRCYSSGKHVWLSDAVNSESDYCFRSFMAKSAGIRTIVMVPTDAGVLELGSVWSLPENIGLVKSVQALFMRRVTQPVMVTSNTNM 255
BLAST of FC878478 vs. ExPASy Swiss-Prot
Match: BH012_ARATH (Transcription factor MYC1 OS=Arabidopsis thaliana GN=BHLH12 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.460e-11 Identity = 55/183 (30.05%), Postives = 82/183 (44.81%), Query Frame = 2 Query: 29 WVYSIFWQPLKDVNGRLVLSWGDGYFRGS-----KDFATRAAAGKQGAGNEPKFGF-FLERKKVSKEVQVHFGEDMDLDR-------MVDGDVTDGEWYYTVSVTRSFAIGDGSVLGRVFSSGDYVWLTGDHELQLYECERVKEARMHGIQTLVCVSTACGVVELGSSDLIKEDWSLVQLAKS 538 W Y+IFW G VL WG+G + G K + + G Q + K LE + H + D D + D++D EWYY VS++ F+ + GR ++G+ +WL + R AR IQT+VC GV+ELG ++LI ED +L++ KS Sbjct: 36 WSYAIFWSSSLTQPG--VLEWGEGCYNGDMKKRKKSYESHYKYGLQKSKELRKLYLSMLEGDSGTTVSTTHDNLNDDDDNCHSTSMMLSPDDLSDEEWYYLVSMSYVFSPSQ-CLPGRASATGETIWLCNAQYAENKLFSRSLLARSASIQTVVCFPYLGGVIELGVTELISEDHNLLRNIKS 215 The following BLAST results are available for this feature:
BLAST of FC878478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878478 ID=FC878478; Name=FC878478; organism=Citrus clementina; type=EST; length=760bpback to top |