FC878510
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878510 vs. ExPASy Swiss-Prot
Match: PP351_ARATH (Pentatricopeptide repeat-containing protein At4g35850, mitochondrial OS=Arabidopsis thaliana GN=At4g35850 PE=1 SV=1) HSP 1 Score: 359.762 bits (922), Expect = 1.199e-98 Identity = 177/267 (66.29%), Postives = 218/267 (81.65%), Query Frame = 2 Query: 83 LLQSIYRHHKSVGGAL-GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACA 880 L+QSI ++S+ AL RR+F +S EE A+RNYAN+ SEYNT V S+T+QRR +LLRDVYDDM LDGVQPT D+FHS +VGTMKG+RL D FFFR++MKA G PDV +YN+LIS CGKCKN +AIR+++EMK+Y+VKPNGQT+VCLLNACA +GQLD VYAIVRDMTAAG GL++FCYAGLITAH NK PR D+ +TKI+E VEQSKGWS++++S +AE+ M +S+EELYN+PTA+Y HR FL R LTVYHVAF A A Sbjct: 4 LMQSISGRNRSLVRALVSRRYFASSP--EEIAKRNYANDLSEYNTAVNSVTAQRRHYLLRDVYDDMKLDGVQPTADIFHSFVVGTMKGARLSDAFFFREEMKAMGIAPDVNLYNFLISTCGKCKNGKEAIRVYDEMKRYDVKPNGQTFVCLLNACAVSGQLDLVYAIVRDMTAAGVGLNQFCYAGLITAHLNKQPRPDNLSTKILEFVEQSKGWSAIDSSRKSAEDVMFSISEEELYNIPTADYSHRT-RFLQRNLTVYHVAFSALA 267
BLAST of FC878510 vs. ExPASy Swiss-Prot
Match: PP132_ARATH (Pentatricopeptide repeat-containing protein At1g79490, mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.834e-14 Identity = 57/187 (30.48%), Postives = 88/187 (47.06%), Query Frame = 2 Query: 164 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 724 ++ R + S ++++V S+ R VY +M G +P+ +F SLI K +L D+MK +GF P+ +Y +I K + A+ +F++M+K P TY CLL A +GQ+D I MT AG Y L+T NK R D A KI+ L ++ G+S Sbjct: 337 QQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSYISLLTLLANK--RLVDVAGKIL-LEMKAMGYS 520
BLAST of FC878510 vs. ExPASy Swiss-Prot
Match: PP325_ARATH (Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.717e-12 Identity = 42/159 (26.42%), Postives = 73/159 (45.91%), Query Frame = 2 Query: 164 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 640 +E R + YNT+++ +++ D+M+ G++P + LI G +++++ F D K NG LPDV Y+ +I C K + +++ F+EM V+PN Y L+ A +G+L + DM G + Y LI Sbjct: 542 KEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 700
BLAST of FC878510 vs. ExPASy Swiss-Prot
Match: PP275_ARATH (Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.717e-12 Identity = 45/184 (24.46%), Postives = 88/184 (47.83%), Query Frame = 2 Query: 167 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 715 E R + N + +++ + + ++V M G++P +F +L+ G ++ D + + M+ GF P+V Y LI ++C K D+A+R+F EM++Y + + TY L++ G +D Y+++ DM G + Y ++ AH K + + +EL+E+ K Sbjct: 226 EDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKK-----EQFEECLELIEKMK 404
BLAST of FC878510 vs. ExPASy Swiss-Prot
Match: PP288_ARATH (Pentatricopeptide repeat-containing protein At3g60050 OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 6.523e-12 Identity = 42/156 (26.92%), Postives = 71/156 (45.51%), Query Frame = 2 Query: 182 NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 649 NY YN ++ SL +++ L+ VY M+ DG P ++ L+ + ++ D+M +GF PD YN L+ + GK A+ MK+ + P+ Y L++ + AG L+ + +M AG D CY +IT + Sbjct: 214 NYRPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGY 369
BLAST of FC878510 vs. ExPASy Swiss-Prot
Match: PP190_ARATH (Pentatricopeptide repeat-containing protein At2g37230 OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 8.519e-12 Identity = 37/145 (25.52%), Postives = 76/145 (52.41%), Query Frame = 2 Query: 206 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 640 YN++ + + R+ + + ++ M+ +GV+PTR ++ ++ G RL+ F + MK G PD A +N +I+ + K D+A ++F EMK ++ P+ +Y ++ A ++D I +M ++G + Y+ L+ Sbjct: 223 YNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETALRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLL 367
BLAST of FC878510 vs. ExPASy Swiss-Prot
Match: PP180_ARATH (Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana GN=At2g32630 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11 Identity = 47/188 (25.00%), Postives = 90/188 (47.87%), Query Frame = 2 Query: 164 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 727 +E++ + A YNT++ + QR F + V M DGV + + L+ ++K ++ D D+M+ G DV VY LIS + N +A +F+E+ + + P+ TY L++ G++ ++ +M + G + + + LI + K D A+ I +++EQ KG+ + Sbjct: 248 KEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRK--GMVDEASMIYDVMEQ-KGFQA 432
BLAST of FC878510 vs. ExPASy Swiss-Prot
Match: PP442_ARATH (Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11 Identity = 45/164 (27.44%), Postives = 70/164 (42.68%), Query Frame = 2 Query: 167 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 658 E +RN + Y TVV + S ++ +M+ G +P ++ +LI ++ SR D +MK G PD+ YN LI K K D+A EM + +KPN TY ++ A + V++M G +K GLI + K Sbjct: 407 EMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKK 570
BLAST of FC878510 vs. ExPASy Swiss-Prot
Match: PP407_ARATH (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11 Identity = 39/159 (24.53%), Postives = 70/159 (44.03%), Query Frame = 2 Query: 167 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 643 E RR Y+ + YNT++ + F ++ +M+ G+ P+ + SLI K + F DQM+ G P+ Y L+ + ++A R+ EM P+ TY L+N G+++ A++ DM G D Y+ +++ Sbjct: 300 EMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLS 458
BLAST of FC878510 vs. ExPASy Swiss-Prot
Match: PP143_ARATH (Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11 Identity = 48/175 (27.43%), Postives = 78/175 (44.57%), Query Frame = 2 Query: 206 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV 730 YN ++ + + R ++++M G+ P ++S+I G K RL DT F ++MK PDV YN LI+ K + + EMK +KPN +Y L++A G + DM G +++ Y LI A+ KI D E+++ W+ V Sbjct: 265 YNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANC-KIGNLSDAFRLGNEMLQVGVEWNVV 438 The following BLAST results are available for this feature:
BLAST of FC878510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878510 ID=FC878510; Name=FC878510; organism=Citrus clementina; type=EST; length=880bpback to top |