FC878510

Overview
NameFC878510
Unique NameFC878510
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length880
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878510 vs. ExPASy Swiss-Prot
Match: PP351_ARATH (Pentatricopeptide repeat-containing protein At4g35850, mitochondrial OS=Arabidopsis thaliana GN=At4g35850 PE=1 SV=1)

HSP 1 Score: 359.762 bits (922), Expect = 1.199e-98
Identity = 177/267 (66.29%), Postives = 218/267 (81.65%), Query Frame = 2
Query:   83 LLQSIYRHHKSVGGAL-GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSVETSGNNAENEMMGVSKEELYNLPTAEYVHRRGGFLSRLLTVYHVAFHACA 880
            L+QSI   ++S+  AL  RR+F +S   EE A+RNYAN+ SEYNT V S+T+QRR +LLRDVYDDM LDGVQPT D+FHS +VGTMKG+RL D FFFR++MKA G  PDV +YN+LIS CGKCKN  +AIR+++EMK+Y+VKPNGQT+VCLLNACA +GQLD VYAIVRDMTAAG GL++FCYAGLITAH NK PR D+ +TKI+E VEQSKGWS++++S  +AE+ M  +S+EELYN+PTA+Y HR   FL R LTVYHVAF A A
Sbjct:    4 LMQSISGRNRSLVRALVSRRYFASSP--EEIAKRNYANDLSEYNTAVNSVTAQRRHYLLRDVYDDMKLDGVQPTADIFHSFVVGTMKGARLSDAFFFREEMKAMGIAPDVNLYNFLISTCGKCKNGKEAIRVYDEMKRYDVKPNGQTFVCLLNACAVSGQLDLVYAIVRDMTAAGVGLNQFCYAGLITAHLNKQPRPDNLSTKILEFVEQSKGWSAIDSSRKSAEDVMFSISEEELYNIPTADYSHRT-RFLQRNLTVYHVAFSALA 267          
BLAST of FC878510 vs. ExPASy Swiss-Prot
Match: PP132_ARATH (Pentatricopeptide repeat-containing protein At1g79490, mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.834e-14
Identity = 57/187 (30.48%), Postives = 88/187 (47.06%), Query Frame = 2
Query:  164 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWS 724
            ++   R    + S ++++V S+    R      VY +M   G +P+  +F SLI    K  +L       D+MK +GF P+  +Y  +I    K    + A+ +F++M+K    P   TY CLL   A +GQ+D    I   MT AG       Y  L+T   NK  R  D A KI+ L  ++ G+S
Sbjct:  337 QQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSYISLLTLLANK--RLVDVAGKIL-LEMKAMGYS 520          
BLAST of FC878510 vs. ExPASy Swiss-Prot
Match: PP325_ARATH (Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.717e-12
Identity = 42/159 (26.42%), Postives = 73/159 (45.91%), Query Frame = 2
Query:  164 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 640
            +E   R    +   YNT+++    +++        D+M+  G++P    +  LI G    +++++   F D  K NG LPDV  Y+ +I  C K + +++    F+EM    V+PN   Y  L+ A   +G+L     +  DM   G   +   Y  LI
Sbjct:  542 KEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 700          
BLAST of FC878510 vs. ExPASy Swiss-Prot
Match: PP275_ARATH (Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.717e-12
Identity = 45/184 (24.46%), Postives = 88/184 (47.83%), Query Frame = 2
Query:  167 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSK 715
            E  R  +  N   + +++     + +    ++V   M   G++P   +F +L+ G     ++ D +   + M+  GF P+V  Y  LI ++C   K  D+A+R+F EM++Y  + +  TY  L++     G +D  Y+++ DM   G    +  Y  ++ AH  K     +   + +EL+E+ K
Sbjct:  226 EDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKK-----EQFEECLELIEKMK 404          
BLAST of FC878510 vs. ExPASy Swiss-Prot
Match: PP288_ARATH (Pentatricopeptide repeat-containing protein At3g60050 OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.523e-12
Identity = 42/156 (26.92%), Postives = 71/156 (45.51%), Query Frame = 2
Query:  182 NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 649
            NY      YN ++ SL   +++ L+  VY  M+ DG  P    ++ L+    +  ++       D+M  +GF PD   YN L+ + GK      A+     MK+  + P+   Y  L++  + AG L+     + +M  AG   D  CY  +IT +
Sbjct:  214 NYRPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGY 369          
BLAST of FC878510 vs. ExPASy Swiss-Prot
Match: PP190_ARATH (Pentatricopeptide repeat-containing protein At2g37230 OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.519e-12
Identity = 37/145 (25.52%), Postives = 76/145 (52.41%), Query Frame = 2
Query:  206 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 640
            YN++   +  + R+ + +  ++ M+ +GV+PTR  ++ ++ G     RL+    F + MK  G  PD A +N +I+   + K  D+A ++F EMK  ++ P+  +Y  ++    A  ++D    I  +M ++G   +   Y+ L+
Sbjct:  223 YNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETALRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLL 367          
BLAST of FC878510 vs. ExPASy Swiss-Prot
Match: PP180_ARATH (Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana GN=At2g32630 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.479e-11
Identity = 47/188 (25.00%), Postives = 90/188 (47.87%), Query Frame = 2
Query:  164 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSS 727
            +E++ +     A  YNT++ +   QR F  +  V   M  DGV   +  +  L+  ++K  ++ D     D+M+  G   DV VY  LIS   +  N  +A  +F+E+ +  + P+  TY  L++     G++     ++ +M + G  + +  +  LI  +  K     D A+ I +++EQ KG+ +
Sbjct:  248 KEFSVKGIKPEAYTYNTIINAYVKQRDFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRK--GMVDEASMIYDVMEQ-KGFQA 432          
BLAST of FC878510 vs. ExPASy Swiss-Prot
Match: PP442_ARATH (Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11
Identity = 45/164 (27.44%), Postives = 70/164 (42.68%), Query Frame = 2
Query:  167 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 658
            E  +RN   +   Y TVV  + S        ++  +M+  G +P   ++ +LI   ++ SR  D      +MK  G  PD+  YN LI    K K  D+A     EM +  +KPN  TY   ++    A +       V++M   G   +K    GLI  +  K
Sbjct:  407 EMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKK 570          
BLAST of FC878510 vs. ExPASy Swiss-Prot
Match: PP407_ARATH (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 39/159 (24.53%), Postives = 70/159 (44.03%), Query Frame = 2
Query:  167 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 643
            E  RR Y+ +   YNT++     +  F     ++ +M+  G+ P+   + SLI    K   +     F DQM+  G  P+   Y  L+    +    ++A R+  EM      P+  TY  L+N     G+++   A++ DM   G   D   Y+ +++
Sbjct:  300 EMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLS 458          
BLAST of FC878510 vs. ExPASy Swiss-Prot
Match: PP143_ARATH (Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.419e-11
Identity = 48/175 (27.43%), Postives = 78/175 (44.57%), Query Frame = 2
Query:  206 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVEQSKGWSSV 730
            YN ++  +  +      R ++++M   G+ P    ++S+I G  K  RL DT  F ++MK     PDV  YN LI+   K       +  + EMK   +KPN  +Y  L++A    G +        DM   G   +++ Y  LI A+  KI    D      E+++    W+ V
Sbjct:  265 YNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANC-KIGNLSDAFRLGNEMLQVGVEWNVV 438          
The following BLAST results are available for this feature:
BLAST of FC878510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PP351_ARATH1.199e-9866.29Pentatricopeptide repeat-containing protein At4g35... [more]
PP132_ARATH1.834e-1430.48Pentatricopeptide repeat-containing protein At1g79... [more]
PP325_ARATH1.717e-1226.42Pentatricopeptide repeat-containing protein At4g19... [more]
PP275_ARATH1.717e-1224.46Pentatricopeptide repeat-containing protein At3g49... [more]
PP288_ARATH6.523e-1226.92Pentatricopeptide repeat-containing protein At3g60... [more]
PP190_ARATH8.519e-1225.52Pentatricopeptide repeat-containing protein At2g37... [more]
PP180_ARATH2.479e-1125.00Pentatricopeptide repeat-containing protein At2g32... [more]
PP442_ARATH7.212e-1127.44Pentatricopeptide repeat-containing protein At5g61... [more]
PP407_ARATH9.419e-1124.53Pentatricopeptide repeat-containing protein At5g39... [more]
PP143_ARATH9.419e-1127.43Putative pentatricopeptide repeat-containing prote... [more]
back to top
Properties
Property NameValue
Genbank descriptionIC0AAA18DG02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA18DG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878510 ID=FC878510; Name=FC878510; organism=Citrus clementina; type=EST; length=880bp
CTAGTACCAAACAGTAAACCCCAAAACCTGCACTAAACCCTCAAATCTTC
TCACGCTCGCGGTCACTCATTTCATTATGAGACTCCTCCAATCCATTTAC
CGTCACCACAAGTCCGTGGGCGGAGCCCTGGGCCGCCGCTTCTTCGTGAC
GTCGGCGGGGGCGGAGGAATACGCCAGGCGAAACTACGCCAACAACGCCT
CCGAATACAACACCGTCGTTACGTCTCTCACTTCTCAGAGACGGTTCTTC
CTTTTGAGGGACGTCTACGATGACATGATGCTCGACGGCGTGCAGCCCAC
GCGCGACTTGTTCCACTCGCTGATCGTTGGGACCATGAAAGGCAGTCGCT
TGCAGGACACTTTTTTCTTCAGAGATCAAATGAAAGCCAACGGTTTTCTC
CCCGACGTTGCTGTGTACAACTATTTGATCTCAGTATGTGGGAAATGCAA
GAATTCTGATCAGGCGATTCGGATATTTGAAGAAATGAAGAAATACGAAG
TGAAGCCAAATGGTCAAACCTATGTCTGTCTACTTAATGCATGTGCAGCA
GCAGGCCAATTAGATCCAGTGTATGCTATTGTCCGTGATATGACTGCAGC
TGGTGCTGGTCTGGACAAGTTCTGCTATGCTGGGCTCATAACCGCACATA
CAAACAAGATCCCTAGAGCCGATGATACGGCCACCAAAATTATTGAGCTT
GTAGAACAGTCAAAGGGCTGGTCTTCTGTTGAAACATCAGGAAACAATGC
CGAAAATGAAATGATGGGAGTTTCAAAAGAAGAATTGTACAATTTACCCA
CTGCTGAATATGTTCATAGACGAGGAGGATTTTTGAGCAGGCTATTAACT
GTCTATCATGTTGCCTTTCATGCTTGTGCT
back to top