FC878511
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_HELMI (Ribosomal RNA large subunit methyltransferase N OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rlmN PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 4.450e-21 Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQ 494 L G+ +E+ L GQ ++RGKQ+ + R V+E+ LPQ+ R L EAGW P R A DGT K L +L D LIE+V +P + R+T C+S+Q Sbjct: 35 LRGLFPEEIAALLTPWGQPTFRGKQIFKWLQNRAVREVAEMTDLPQALRVRLGEAGWLKPLAP-ERHRVARDGTEKYLWRLADGELIESVLMPYRRAQTRDRVTVCLSTQ 143 HSP 2 Score: 52.7582 bits (125), Expect = 4.450e-21 Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 2 Query: 584 LGIQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 685 L Q GCPL C FCATG+ GF RNL++ EIVGQV Sbjct: 140 LSTQAGCPLSCRFCATGRQGFRRNLTAAEIVGQV 173
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_MOOTA (Ribosomal RNA large subunit methyltransferase N OS=Moorella thermoacetica (strain ATCC 39073) GN=rlmN PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 5.059e-19 Identity = 49/115 (42.61%), Postives = 66/115 (57.39%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLP---IFRTVTAADG-TVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497 L G+ QEL++LAV LG+ YRG+Q+ ++ R+ K IE LP++FR L V LP + + AADG T KLL+ L D IE V + +D G R TAC+SSQV Sbjct: 7 LRGLLPQELEELAVRLGEAPYRGRQIFRWLHARRAKGIEVMSDLPRAFRERLA----LVAELPPVRVLNRLVAADGLTRKLLLGLGDGNSIECVLMIYKD--GRRRNTACLSSQV 115 HSP 2 Score: 46.9802 bits (110), Expect = 5.059e-19 Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 2 Query: 584 LGIQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 682 L QVGC + CSFCATG+GG RNL++ EI+ Q Sbjct: 111 LSSQVGCAMGCSFCATGQGGLQRNLTASEIILQ 143
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_SYNS9 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain CC9902) GN=rlmN PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 7.277e-19 Identity = 50/113 (44.25%), Postives = 68/113 (60.18%), Query Frame = 3 Query: 159 NVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497 NVLLG S EL+ AV G +S+RG+Q+H +Y + VK + LP+ +R +L+ + VGRL + AAD T KLL+ +D IETVGIP + RLT C+SSQV Sbjct: 3 NVLLGRSAAELEDWAVAQGHKSFRGRQIHDWLYNKGVKSLSEISALPKQWRTELEAQTFRVGRLKLVHQSVAADATTKLLLATDDGETIETVGIPTD-----QRLTVCISSQV 110
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_CHLPD (Ribosomal RNA large subunit methyltransferase N OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rlmN PE=3 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 8.550e-19 Identity = 44/114 (38.60%), Postives = 65/114 (57.02%), Query Frame = 3 Query: 174 MSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIF----RTVTAAD--GTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497 +S QEL++ +LG+ +YR +Q+H I+ + E + RN L + + +G PI + +A D TVKLL++L+DN IETV IP E+ R+TACVSSQV Sbjct: 11 LSRQELRQAIANLGEPAYRTRQIHQWIFSHRAATFEEMTTISLELRNKLADQ-FRIG-FPILADCQQDGSANDPFSTVKLLLELDDNEKIETVLIPSEN-----RMTACVSSQV 117 HSP 2 Score: 50.8322 bits (120), Expect = 8.550e-19 Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 2 Query: 593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 685 QVGCPL+C FCA+G+ GF RNLS+ EI+ QV Sbjct: 116 QVGCPLQCRFCASGQTGFKRNLSADEIIDQV 146
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_SYNS3 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain CC9311) GN=rlmN PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.611e-18 Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = 3 Query: 159 NVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497 + LLG S+ EL++ AV GQ ++RG+QLH +Y + V++++ LP+++R LQ G +VGRL +AD T KLL+ ED +ETVGIP + RLT CVSSQV Sbjct: 3 SALLGRSKSELEEWAVAQGQPAFRGRQLHDWLYAKGVRDLQGITVLPKAWRASLQNEGVSVGRLHEQERRVSADATTKLLLGTEDGETLETVGIPTD-----QRLTVCVSSQV 110
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_BACV8 (Ribosomal RNA large subunit methyltransferase N OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=rlmN PE=3 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 4.137e-18 Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497 LLG + E+Q++ +LG + KQ+ +Y +KV+ I+ L R L+E G+ VG + + DGTVK L + + IE V IP ED R T CVSSQV Sbjct: 8 LLGRTLDEIQQIVRNLGMPKFAAKQITSWLYDKKVETIDEMTNLSLKHREALKE-GYEVGASAPVEEMRSVDGTVKYLFRTPAHNFIEAVYIPDED-----RATLCVSSQV 112 HSP 2 Score: 48.521 bits (114), Expect = 4.137e-18 Identity = 18/32 (56.25%), Postives = 25/32 (78.12%), Query Frame = 2 Query: 593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQVH 688 QVGC + C FC TGK GF+ NLS+H+I+ Q++ Sbjct: 111 QVGCKMNCKFCMTGKQGFTANLSAHQILNQIY 142
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_BACTN (Ribosomal RNA large subunit methyltransferase N OS=Bacteroides thetaiotaomicron GN=rlmN PE=3 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 4.138e-18 Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497 LLGM+ ELQ L LG + KQ+ +Y +KV I+ L +R +L + + VG + + DGTVK L + +N +E+V IP +DE R T C+SSQV Sbjct: 7 LLGMTLIELQSLVKRLGMPGFAAKQIASWLYDKKVTSIDEMTNLSLKYR-ELLKQNYEVGAEAPVEEMRSVDGTVKYLYPVGENHFVESVYIP-DDE----RATLCISSQV 111 HSP 2 Score: 50.447 bits (119), Expect = 4.138e-18 Identity = 18/32 (56.25%), Postives = 25/32 (78.12%), Query Frame = 2 Query: 593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQVH 688 QVGC + C FC TGK G+S NL++H+I+ Q+H Sbjct: 110 QVGCKMNCKFCMTGKQGYSANLTAHQIINQIH 141
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_PROMT (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain NATL2A) GN=rlmN PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 4.717e-18 Identity = 48/122 (39.34%), Postives = 77/122 (63.11%), Query Frame = 3 Query: 135 SRAPRVDANV-LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497 ++ P++ +N LLG+S ++L++ A G++S+RG+Q+H IY+R K +++ LP+ +R+ L G +GRL V A D T+KLL+ D ++ETVGIP + RLT CVSSQ+ Sbjct: 2 TKLPKLSSNSSLLGLSSEDLEEFARQEGEKSFRGRQIHEWIYQRGAKSLDSISVLPKKWRDSLVRKGIQIGRLDEINRVVAEDETLKLLMGTFDGEIVETVGIPTD-----KRLTVCVSSQI 118
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_PROM1 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain NATL1A) GN=rlmN PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 4.717e-18 Identity = 48/122 (39.34%), Postives = 77/122 (63.11%), Query Frame = 3 Query: 135 SRAPRVDANV-LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497 ++ P++ +N LLG+S ++L++ A G++S+RG+Q+H IY+R K +++ LP+ +R+ L G +GRL V A D T+KLL+ D ++ETVGIP + RLT CVSSQ+ Sbjct: 2 TKLPKLSSNSSLLGLSSEDLEEFARQEGEKSFRGRQIHEWIYQRGAKSLDSISVLPKKWRDSLVRKGIQIGRLDEINRVVAEDETLKLLMGTFDGEIVETVGIPTD-----KRLTVCVSSQI 118
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_PROM4 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain MIT 9211) GN=rlmN PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 8.045e-18 Identity = 47/112 (41.96%), Postives = 70/112 (62.50%), Query Frame = 3 Query: 162 VLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497 VLLG + +L+KLA + G+ ++RG+Q+H +Y++ V+++E LP+ +R L + G GRL + + A DGT+KLL++ D IE VGIP RLT CVSSQV Sbjct: 12 VLLGQNVAKLEKLAQEYGEPAFRGRQIHEWLYQKGVRKLEEISVLPKLWRTTLSDQGVCTGRLEEVKRLVANDGTIKLLLETSDRESIEAVGIPTNS-----RLTTCVSSQV 118 The following BLAST results are available for this feature:
BLAST of FC878511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 229
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878511 ID=FC878511; Name=FC878511; organism=Citrus clementina; type=EST; length=888bpback to top |