FC878511

Overview
NameFC878511
Unique NameFC878511
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length888
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_HELMI (Ribosomal RNA large subunit methyltransferase N OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rlmN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.450e-21
Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQ 494
            L G+  +E+  L    GQ ++RGKQ+   +  R V+E+     LPQ+ R  L EAGW     P  R   A DGT K L +L D  LIE+V +P    +   R+T C+S+Q
Sbjct:   35 LRGLFPEEIAALLTPWGQPTFRGKQIFKWLQNRAVREVAEMTDLPQALRVRLGEAGWLKPLAP-ERHRVARDGTEKYLWRLADGELIESVLMPYRRAQTRDRVTVCLSTQ 143          

HSP 2 Score: 52.7582 bits (125), Expect = 4.450e-21
Identity = 23/34 (67.65%), Postives = 26/34 (76.47%), Query Frame = 2
Query:  584 LGIQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 685
            L  Q GCPL C FCATG+ GF RNL++ EIVGQV
Sbjct:  140 LSTQAGCPLSCRFCATGRQGFRRNLTAAEIVGQV 173          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_MOOTA (Ribosomal RNA large subunit methyltransferase N OS=Moorella thermoacetica (strain ATCC 39073) GN=rlmN PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.059e-19
Identity = 49/115 (42.61%), Postives = 66/115 (57.39%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLP---IFRTVTAADG-TVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497
            L G+  QEL++LAV LG+  YRG+Q+   ++ R+ K IE    LP++FR  L      V  LP   +   + AADG T KLL+ L D   IE V +  +D  G  R TAC+SSQV
Sbjct:    7 LRGLLPQELEELAVRLGEAPYRGRQIFRWLHARRAKGIEVMSDLPRAFRERLA----LVAELPPVRVLNRLVAADGLTRKLLLGLGDGNSIECVLMIYKD--GRRRNTACLSSQV 115          

HSP 2 Score: 46.9802 bits (110), Expect = 5.059e-19
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 2
Query:  584 LGIQVGCPLRCSFCATGKGGFSRNLSSHEIVGQ 682
            L  QVGC + CSFCATG+GG  RNL++ EI+ Q
Sbjct:  111 LSSQVGCAMGCSFCATGQGGLQRNLTASEIILQ 143          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_SYNS9 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain CC9902) GN=rlmN PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.277e-19
Identity = 50/113 (44.25%), Postives = 68/113 (60.18%), Query Frame = 3
Query:  159 NVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497
            NVLLG S  EL+  AV  G +S+RG+Q+H  +Y + VK +     LP+ +R +L+   + VGRL +     AAD T KLL+  +D   IETVGIP +      RLT C+SSQV
Sbjct:    3 NVLLGRSAAELEDWAVAQGHKSFRGRQIHDWLYNKGVKSLSEISALPKQWRTELEAQTFRVGRLKLVHQSVAADATTKLLLATDDGETIETVGIPTD-----QRLTVCISSQV 110          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_CHLPD (Ribosomal RNA large subunit methyltransferase N OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rlmN PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 8.550e-19
Identity = 44/114 (38.60%), Postives = 65/114 (57.02%), Query Frame = 3
Query:  174 MSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIF----RTVTAAD--GTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497
            +S QEL++   +LG+ +YR +Q+H  I+  +    E    +    RN L +  + +G  PI     +  +A D   TVKLL++L+DN  IETV IP E+     R+TACVSSQV
Sbjct:   11 LSRQELRQAIANLGEPAYRTRQIHQWIFSHRAATFEEMTTISLELRNKLADQ-FRIG-FPILADCQQDGSANDPFSTVKLLLELDDNEKIETVLIPSEN-----RMTACVSSQV 117          

HSP 2 Score: 50.8322 bits (120), Expect = 8.550e-19
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 2
Query:  593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQV 685
            QVGCPL+C FCA+G+ GF RNLS+ EI+ QV
Sbjct:  116 QVGCPLQCRFCASGQTGFKRNLSADEIIDQV 146          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_SYNS3 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain CC9311) GN=rlmN PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.611e-18
Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = 3
Query:  159 NVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497
            + LLG S+ EL++ AV  GQ ++RG+QLH  +Y + V++++    LP+++R  LQ  G +VGRL       +AD T KLL+  ED   +ETVGIP +      RLT CVSSQV
Sbjct:    3 SALLGRSKSELEEWAVAQGQPAFRGRQLHDWLYAKGVRDLQGITVLPKAWRASLQNEGVSVGRLHEQERRVSADATTKLLLGTEDGETLETVGIPTD-----QRLTVCVSSQV 110          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_BACV8 (Ribosomal RNA large subunit methyltransferase N OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=rlmN PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 4.137e-18
Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497
            LLG +  E+Q++  +LG   +  KQ+   +Y +KV+ I+    L    R  L+E G+ VG       + + DGTVK L +   +  IE V IP ED     R T CVSSQV
Sbjct:    8 LLGRTLDEIQQIVRNLGMPKFAAKQITSWLYDKKVETIDEMTNLSLKHREALKE-GYEVGASAPVEEMRSVDGTVKYLFRTPAHNFIEAVYIPDED-----RATLCVSSQV 112          

HSP 2 Score: 48.521 bits (114), Expect = 4.137e-18
Identity = 18/32 (56.25%), Postives = 25/32 (78.12%), Query Frame = 2
Query:  593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQVH 688
            QVGC + C FC TGK GF+ NLS+H+I+ Q++
Sbjct:  111 QVGCKMNCKFCMTGKQGFTANLSAHQILNQIY 142          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_BACTN (Ribosomal RNA large subunit methyltransferase N OS=Bacteroides thetaiotaomicron GN=rlmN PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 4.138e-18
Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497
            LLGM+  ELQ L   LG   +  KQ+   +Y +KV  I+    L   +R +L +  + VG       + + DGTVK L  + +N  +E+V IP +DE    R T C+SSQV
Sbjct:    7 LLGMTLIELQSLVKRLGMPGFAAKQIASWLYDKKVTSIDEMTNLSLKYR-ELLKQNYEVGAEAPVEEMRSVDGTVKYLYPVGENHFVESVYIP-DDE----RATLCISSQV 111          

HSP 2 Score: 50.447 bits (119), Expect = 4.138e-18
Identity = 18/32 (56.25%), Postives = 25/32 (78.12%), Query Frame = 2
Query:  593 QVGCPLRCSFCATGKGGFSRNLSSHEIVGQVH 688
            QVGC + C FC TGK G+S NL++H+I+ Q+H
Sbjct:  110 QVGCKMNCKFCMTGKQGYSANLTAHQIINQIH 141          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_PROMT (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain NATL2A) GN=rlmN PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.717e-18
Identity = 48/122 (39.34%), Postives = 77/122 (63.11%), Query Frame = 3
Query:  135 SRAPRVDANV-LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497
            ++ P++ +N  LLG+S ++L++ A   G++S+RG+Q+H  IY+R  K +++   LP+ +R+ L   G  +GRL     V A D T+KLL+   D  ++ETVGIP +      RLT CVSSQ+
Sbjct:    2 TKLPKLSSNSSLLGLSSEDLEEFARQEGEKSFRGRQIHEWIYQRGAKSLDSISVLPKKWRDSLVRKGIQIGRLDEINRVVAEDETLKLLMGTFDGEIVETVGIPTD-----KRLTVCVSSQI 118          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_PROM1 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain NATL1A) GN=rlmN PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.717e-18
Identity = 48/122 (39.34%), Postives = 77/122 (63.11%), Query Frame = 3
Query:  135 SRAPRVDANV-LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497
            ++ P++ +N  LLG+S ++L++ A   G++S+RG+Q+H  IY+R  K +++   LP+ +R+ L   G  +GRL     V A D T+KLL+   D  ++ETVGIP +      RLT CVSSQ+
Sbjct:    2 TKLPKLSSNSSLLGLSSEDLEEFARQEGEKSFRGRQIHEWIYQRGAKSLDSISVLPKKWRDSLVRKGIQIGRLDEINRVVAEDETLKLLMGTFDGEIVETVGIPTD-----KRLTVCVSSQI 118          
BLAST of FC878511 vs. ExPASy Swiss-Prot
Match: RLMN_PROM4 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain MIT 9211) GN=rlmN PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.045e-18
Identity = 47/112 (41.96%), Postives = 70/112 (62.50%), Query Frame = 3
Query:  162 VLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQV 497
            VLLG +  +L+KLA + G+ ++RG+Q+H  +Y++ V+++E    LP+ +R  L + G   GRL   + + A DGT+KLL++  D   IE VGIP        RLT CVSSQV
Sbjct:   12 VLLGQNVAKLEKLAQEYGEPAFRGRQIHEWLYQKGVRKLEEISVLPKLWRTTLSDQGVCTGRLEEVKRLVANDGTIKLLLETSDRESIEAVGIPTNS-----RLTTCVSSQV 118          
The following BLAST results are available for this feature:
BLAST of FC878511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
RLMN_HELMI4.450e-2138.18Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_MOOTA5.059e-1942.61Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNS97.277e-1944.25Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_CHLPD8.550e-1938.60Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNS33.611e-1844.25Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_BACV84.137e-1836.94Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_BACTN4.138e-1836.94Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROMT4.717e-1839.34Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROM14.717e-1839.34Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROM48.045e-1841.96Ribosomal RNA large subunit methyltransferase N OS... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA56DA11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA56DA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878511 ID=FC878511; Name=FC878511; organism=Citrus clementina; type=EST; length=888bp
AAAGGATAATTGCCGTTTCAATGACTCTGCTTCGGCAAGTGATCTCTGCT
CCCGTAGCACATGCGGTGGTGCTTTCTCGCTCCTGCCTTGCAGTTTCTGT
GACCCCGCGGCGCAAGTTATCTGTTTCTTCTTCTTCACGTGCCCCTCGCG
TGGACGCCAACGTGCTCCTTGGCATGTCCGAGCAGGAGCTTCAAAAACTC
GCCGTCGACCTCGGCCAGCAAAGTTACAGAGGGAAGCAGCTTCATCATCT
AATTTACAAAAGAAAGGTCAAAGAAATTGAAAATTTTATTCAACTGCCTC
AGTCCTTCAGAAATGATCTCCAAGAAGCTGGATGGACGGTTGGTCGCTTG
CCGATTTTTCGCACGGTCACTGCAGCTGATGGAACTGTTAAATTGCTAAT
AAAGCTGGAAGACAACAGATTGATTGAAACTGTTGGCATACCAGTTGAAG
ACGAGAAAGGTCCCATGCGTCTTACCGCTTGTGTGTCATCGCAGGTGTTT
TTCATGCATCATTACTGACAAATGAAAAATTTTCTTCTTCGAAAGATTAT
TCCTTGATTGAGCATAAGAAATTGTCTTATCCTTTGGGTATTCAGGTAGG
TTGCCCATTGCGTTGTTCGTTTTGTGCCACTGGAAAGGGAGGATTTTCAA
GAAATCTTTCAAGCCATGAAATTGTTGGGCAGGTTCATTTCTTCTTTTTT
AAGTTTTTAAATGTTGACACATCANAATCCATATAATCTCATTGGCTACA
TTATTTGACAATAAAGTGGTTTTAGTGTGATGAGATTTATCCTGTCTTTT
TATCCAAGCTAGTATCTGTTTCTTCAGCATGATGCAGTTTGTTTCAGGTG
TTAGCAATTGAAGAGATCTTCAGGCATAAGGTGACAAA
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