FC878513

Overview
NameFC878513
Unique NameFC878513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878513 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.853e-34
Identity = 68/85 (80.00%), Postives = 78/85 (91.76%), Query Frame = 2
Query:   29 MASGDV*FRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 283
            MASGDV +RCFVGGLAWAT D +L  AF  YGD+++SKIINDRETGRSRGFGFVTF+DEK+M+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of FC878513 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.201e-33
Identity = 68/85 (80.00%), Postives = 77/85 (90.59%), Query Frame = 2
Query:   29 MASGDV*FRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 283
            MAS DV +RCFVGGLAWAT D +L  AF  YG++L+SKIINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASPDVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of FC878513 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.495e-33
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 2
Query:   41 DV*FRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 283
            +V +RCFVGGLAWAT D SL +AF  +GDI +SKIINDRETGRSRGFGFVTF+DEKSMRDAIEGMNGQ LDGRNITVNEAQ
Sbjct:    3 EVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQ 83          
BLAST of FC878513 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.328e-32
Identity = 66/85 (77.65%), Postives = 77/85 (90.59%), Query Frame = 2
Query:   29 MASGDV*FRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 283
            MAS DV +RCFVGGLAWAT + SL  AF  +G++++SKIINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:    1 MASPDVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of FC878513 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.616e-30
Identity = 62/85 (72.94%), Postives = 72/85 (84.71%), Query Frame = 2
Query:   29 MASGDV*FRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 283
            MA+ DV +RCFVGGLAWAT++ SL  AF +YG+IL+SK+I DRETGRSRGFGFVTF  E SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:    1 MAAADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of FC878513 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.061e-29
Identity = 60/81 (74.07%), Postives = 68/81 (83.95%), Query Frame = 2
Query:   41 DV*FRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 283
            DV +RCFVGGL WAT D SL  AF  YGD+++SKII DRETGRSRGFGFVTF  +++MR AIE MNGQ+LDGRNITVNEAQ
Sbjct:    3 DVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQ 83          
BLAST of FC878513 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.222e-29
Identity = 59/81 (72.84%), Postives = 69/81 (85.19%), Query Frame = 2
Query:   41 DV*FRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 283
            +V +RCFVGGLAWAT D  L   F  +GD+++SKIINDRE+GRSRGFGFVTF+DEK+MRDAIE MNG+ LDGR ITVNEAQ
Sbjct:    3 EVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83          
BLAST of FC878513 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.820e-29
Identity = 58/81 (71.60%), Postives = 70/81 (86.42%), Query Frame = 2
Query:   41 DV*FRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 283
            +V +RCFVGGLAWAT D+ L   F  +G++++SKIINDRETGRSRGFGFVTF+DEKSM+DAI+ MNG+ LDGR ITVNEAQ
Sbjct:    3 EVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQ 83          
BLAST of FC878513 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.163e-28
Identity = 58/85 (68.24%), Postives = 71/85 (83.53%), Query Frame = 2
Query:   29 MASGDV*FRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 283
            MA+ DV +RCFVGGLAWAT + +L +AF  +G +++SK+I DRETGRSRGFGFVTF  E+SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:    1 MAAADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of FC878513 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.008e-21
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 2
Query:   92 SSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 283
            +SLH AF  YG++LESKII DRET RSRGFGFVTF  E++MR AIEGMNG+ LDGRNITVNEAQ
Sbjct:    1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ 64          
The following BLAST results are available for this feature:
BLAST of FC878513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
GRP7_ARATH1.853e-3480.00Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRP1_SINAL1.201e-3380.00Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP1_DAUCA3.495e-3382.72Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP2_SINAL1.328e-3277.65Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRPA_MAIZE3.616e-3072.94Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP_HORVU3.061e-2974.07Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRP8_ARATH5.222e-2972.84Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP10_BRANA6.820e-2971.60Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRP2_SORBI1.163e-2868.24Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
GRP1_SORBI4.008e-2176.56Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA44BE10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA44BE10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878513 ID=FC878513; Name=FC878513; organism=Citrus clementina; type=EST; length=697bp
CTTAGTCCCCATTTTAAGTTTTCTCCTAATGGCTTCAGGCGATGTCTAGT
TTAGGTGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTC
CATGAGGCCTTCGGTGCTTACGGCGATATCCTTGAATCGAAGATAATTAA
CGATCGCGAGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTCCGCG
ATGAGAAGTCGATGAGGGACGCGATCGAAGGCATGAACGGCCAGAATCTC
GACGGCCGTAACATCACAGTCAACGAGGCCCAGTCCCGCGGAAGCGGTGG
CGGTGGCGGTGGTGGTTACGGAAGCCGCGGCGGTGGCGGATATGGAGGTG
GTGGACGCCGTGAAAGTGGTGGTGGTGGTGGATACGGTGGGAGCCGCGGA
TACGGAGGTGGCGGTGGTGGAGGATATGGTGGCCGCCGTGAAGGTGGTTA
CAGCCGTGATGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGA
GCGGTGCTTCTGATGGCGGCAGCTGGAGGAATTAGTGTTGTTTAGGATAA
ATTAGGAGCTATGTTATGGTTTCGTGTTTTGATATTTTCCTTGGGTTATG
TTGTGTCGTTTTGATCGGTTCCTGTTATCCTGTGTTGTTTCGATCTCCCT
GTTTGGTTAATTGTTTGAAAAAAAAATGAAATGAATTACAGTTCTTT
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