FC878514

Overview
NameFC878514
Unique NameFC878514
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length757
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878514 vs. ExPASy Swiss-Prot
Match: PSAF_ARATH (Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana GN=PSAF PE=1 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.371e-73
Identity = 144/224 (64.29%), Postives = 158/224 (70.54%), Query Frame = 1
Query:   88 MSLTIPTNLSKPLLKPRSNSQLSHA-KLSKQMITCXXXXXXXXXXXXXXXXXXPLQAFXXXXXXXXXXXXXPQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNG 756
            MSLTIP NL   +L PRSN  L+ +   S     C                   ++AF             P PAVADISGLTPCK+SKQFAKR              YAP+SAPALA+ A +EKTKRRFDNYGKYGLLCGSDGLPHLIV+GDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASR++FRGF WPVAAYREF+NG
Sbjct:    1 MSLTIPANL---VLNPRSNKSLTQSVPKSSARFVCSDDKSSSSTPQS-------MKAFSAAVALSSILLSAPMPAVADISGLTPCKDSKQFAKREKQQIKKLESSLKLYAPESAPALALNAQIEKTKRRFDNYGKYGLLCGSDGLPHLIVNGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRIIFRGFIWPVAAYREFLNG 214          
BLAST of FC878514 vs. ExPASy Swiss-Prot
Match: PSAF_SPIOL (Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea GN=PSAF PE=1 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.859e-71
Identity = 143/224 (63.84%), Postives = 151/224 (67.41%), Query Frame = 1
Query:   88 MSLTIPTNLSKPLL-KPRSNSQLSHAKLSKQMITCXXXXXXXXXXXXXXXXXXPLQAFXXXXXXXXXXXXXPQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNG 756
            MS TIPTNL KPL  KP+  S  S A  SK +                        A              P  A+ADI+GLTPCKESKQFAKR              YA DSAPALAIKATMEKTK+RFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAI  EKKP  KEIIIDVPLAS L+FRGFSWPVAAYRE +NG
Sbjct:    1 MSFTIPTNLYKPLATKPKHLSSSSFAPRSKIVCQQENDQQQPKKLELAKVGANAAAALALSSVLLSSWSVAPDAAMADIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAPALAIKATMEKTKKRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNG 224          
BLAST of FC878514 vs. ExPASy Swiss-Prot
Match: PSAF_FLATR (Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia GN=PSAF PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 7.042e-70
Identity = 139/225 (61.78%), Postives = 152/225 (67.56%), Query Frame = 1
Query:   88 MSLTIPTNLSKPL--LKPRSNSQLSHAKLSKQMITCXXXXXXXXXXXXXXXXXXPLQAFXXXXXXXXXXXXXPQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNG 756
            MS TI T+  +PL     +S+   S +K++   I C                   L A                PA ADISGLTPCKESKQFAKR              YAPDSAPALAIKATMEKTKRRFDNYGK GLLCGSDGLPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIAI  EKKP  KEIIIDVPLA++L+FRGFSWPVAAYRE++NG
Sbjct:    1 MSFTISTSFLQPLEISNLKSSPITSKSKVTSTSIVCSGSTDEKINNADGKSSLKALSAALALSSILVSSTVPALPASADISGLTPCKESKQFAKREKQSLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLATKLLFRGFSWPVAAYREYLNG 225          
BLAST of FC878514 vs. ExPASy Swiss-Prot
Match: PSAF_HORVU (Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare GN=PSAF PE=1 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 1.243e-66
Identity = 119/153 (77.78%), Postives = 132/153 (86.27%), Query Frame = 1
Query:  298 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNG 756
            P PA ADI+GLTPCKESK FAKR              YAPDSAPALAI+AT++KTKRRF+NYGK+GLLCGSDGLPHLIVSGDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIA+SGEKKPAM+EIIIDV LA+R++ RGF WPVAAYRE +NG
Sbjct:   72 PPPAAADIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAIQATIDKTKRRFENYGKFGLLCGSDGLPHLIVSGDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELING 224          
BLAST of FC878514 vs. ExPASy Swiss-Prot
Match: PSAF_CHLRE (Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAF PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.970e-41
Identity = 86/157 (54.78%), Postives = 103/157 (65.61%), Query Frame = 1
Query:  298 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQR----HWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNG 756
            P  A+ADI+GLTPC ESK +AK               Y  DSAPA+A+KATME+TK RF NY K GLLCG+DGLPHLI          H GE   P   FLY+AG+IG+VGR YLIA+ GE KP  KEIIIDVPLA++L ++G  WP+AA +E   G
Sbjct:   57 PSAAMADIAGLTPCSESKAYAKLEKKELKTLEKRLKQYEADSAPAVALKATMERTKARFANYAKAGLLCGNDGLPHLIADPGLALKYGHAGEVFIPTFGFLYVAGYIGYVGRQYLIAVKGEAKPTDKEIIIDVPLATKLAWQGAGWPLAAVQELQRG 213          
BLAST of FC878514 vs. ExPASy Swiss-Prot
Match: PSAF_PORYE (Photosystem I reaction center subunit III OS=Porphyra yezoensis GN=psaF PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.530e-40
Identity = 79/153 (51.63%), Postives = 102/153 (66.67%), Query Frame = 1
Query:  298 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNG 756
            P  A A+++GL PCK+S  F KR              Y  D+ PALA+   +EKTK RF  YG+ GLLCG+DGLPHLI  G     G+F+ PGLLFLYI GWIGWVGR YL++++   KP  KEII+DVPLA + +  GF+WP+AA++EF +G
Sbjct:   15 PIIANAEVAGLVPCKDSAAFNKRMVNSVKKLQARLAKYDADTPPALALNKQIEKTKTRFATYGRAGLLCGTDGLPHLISDGRWSRAGDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLAIKFMSSGFAWPLAAWQEFSSG 167          
BLAST of FC878514 vs. ExPASy Swiss-Prot
Match: PSAF_GUITH (Photosystem I reaction center subunit III OS=Guillardia theta GN=psaF PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.998e-40
Identity = 78/153 (50.98%), Postives = 98/153 (64.05%), Query Frame = 1
Query:  298 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNG 756
            P  + AD++GL PCK SK+F +R              Y P++ P LA++  + KTK RF  YG  GLLCG+DGLPHLI  G   H GEF+ PGL FLYIAGWIGWVGR+Y+   S   KP  KEIIIDVP+A   +  G+ WP AA++EF +G
Sbjct:   17 PVASHADVAGLVPCKNSKEFQRRLDSSVKKLESRLSKYEPNTPPYLALETQINKTKNRFTQYGNAGLLCGTDGLPHLIADGRWSHAGEFMVPGLFFLYIAGWIGWVGRNYVQFASQTDKPTEKEIIIDVPVALSFISTGYIWPFAAFKEFTSG 169          
BLAST of FC878514 vs. ExPASy Swiss-Prot
Match: PSAF_PORPU (Photosystem I reaction center subunit III OS=Porphyra purpurea GN=psaF PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.295e-39
Identity = 76/148 (51.35%), Postives = 100/148 (67.57%), Query Frame = 1
Query:  313 ADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNG 756
            A+++GL PCK+S  F KR              Y  ++ PALA+   +EKTK RF  YG+ GLLCG+DGLPHLI  G     G+F+ PGLLFLYI GWIGWVGR YL++++   KP  KEII+DVPLA + +  GF+WP+AA++EF +G
Sbjct:   24 AEVAGLIPCKDSAAFNKRMVNSVKKLQARLAKYDANTPPALALNKQIEKTKTRFATYGRAGLLCGTDGLPHLISDGRWSRAGDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLAVKFMSSGFAWPLAAWQEFSSG 171          
BLAST of FC878514 vs. ExPASy Swiss-Prot
Match: PSAF_CYAPA (Photosystem I reaction center subunit III OS=Cyanophora paradoxa GN=psaF PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.190e-38
Identity = 77/152 (50.66%), Postives = 99/152 (65.13%), Query Frame = 1
Query:  301 QPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVNG 756
            +P  AD++GL PC +S  F +R              Y P SAPA A++  ++KT++RFD Y   GLLCG+DGLPHLI  G   H GEF  PGLLFLYIAG+IGW GRSYL A++       KEIIID+P+A + V +GF WP+AA +EF +G
Sbjct:   21 RPVRADVAGLIPCSQSDAFERRLKNTTQRLENRLKKYEPGSAPAEALQKQIDKTQQRFDKYRNSGLLCGADGLPHLITDGRWSHAGEFTIPGLLFLYIAGFIGWSGRSYLQAVAASDNSTEKEIIIDIPVALQSVSKGFVWPLAALQEFSSG 172          
BLAST of FC878514 vs. ExPASy Swiss-Prot
Match: PSAF_ODOSI (Photosystem I reaction center subunit III OS=Odontella sinensis GN=psaF PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.282e-38
Identity = 75/152 (49.34%), Postives = 97/152 (63.82%), Query Frame = 1
Query:  298 PQPAVADISGLTPCKESKQFAKRXXXXXXXXXXXXXXYAPDSAPALAIKATMEKTKRRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGLLFLYIAGWIGWVGRSYLIAISGEKKPAMKEIIIDVPLASRLVFRGFSWPVAAYREFVN 753
            P  A+ADI GLT C ES  F KR              Y   S PALA++  +E+T+ RFD Y +  LLCG+DGLPHLI  G   H  EFI PG  F+YI+GWIGWVGR YL A+S  K P   EIII+VPLA +++  G+ WP++A++EF++
Sbjct:   19 PNRALADIGGLTKCSESPAFEKRLKASVKKLEQRMGKYEAGSPPALALQQQIERTQARFDKYSRSELLCGTDGLPHLIADGRWSHAAEFILPGFGFIYISGWIGWVGRKYLRAVSTTKNPTESEIIINVPLALKIMTTGYIWPISAWQEFIS 170          
The following BLAST results are available for this feature:
BLAST of FC878514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PSAF_ARATH1.371e-7364.29Photosystem I reaction center subunit III, chlorop... [more]
PSAF_SPIOL2.859e-7163.84Photosystem I reaction center subunit III, chlorop... [more]
PSAF_FLATR7.042e-7061.78Photosystem I reaction center subunit III, chlorop... [more]
PSAF_HORVU1.243e-6677.78Photosystem I reaction center subunit III, chlorop... [more]
PSAF_CHLRE8.970e-4154.78Photosystem I reaction center subunit III, chlorop... [more]
PSAF_PORYE1.530e-4051.63Photosystem I reaction center subunit III OS=Porph... [more]
PSAF_GUITH1.998e-4050.98Photosystem I reaction center subunit III OS=Guill... [more]
PSAF_PORPU1.295e-3951.35Photosystem I reaction center subunit III OS=Porph... [more]
PSAF_CYAPA3.190e-3850.66Photosystem I reaction center subunit III OS=Cyano... [more]
PSAF_ODOSI9.282e-3849.34Photosystem I reaction center subunit III OS=Odont... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ5YP15RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YP15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878514 ID=FC878514; Name=FC878514; organism=Citrus clementina; type=EST; length=757bp
ACAAAATCATTTCACGTCCATCTCCGCTTCTCCATTAGACACTCACACAC
ACTCACCCTGAAAGAAAAGAAGAAAAGGAAAAAGAAGATGTCTCTGACAA
TTCCAACAAATCTTTCAAAACCCCTATTGAAGCCAAGATCAAACTCTCAG
TTGAGCCATGCAAAATTATCGAAACAAATGATCACGTGCTCTTCTTCTGC
TGGTTCTGAAGAGACTTCCTCTTCTTCTGGCAAGGCCGCCAAGCCGCTCC
AGGCTTTCTCAGCAGCCCTTGCGCTTTCCTCAATTCTGCTATCAGCCCCA
CAGCCCGCAGTTGCCGACATCAGCGGCCTCACCCCCTGCAAAGAGTCCAA
ACAATTCGCCAAGCGCGAGAAGCAGCAGCTCAAGAAGCTCGAGTCTTCAC
TAAAACTGTACGCTCCCGACAGCGCCCCGGCTCTCGCAATCAAAGCCACC
ATGGAGAAGACGAAACGGCGGTTTGACAACTACGGGAAGTACGGGTTGCT
GTGCGGGTCAGATGGGTTGCCGCATCTGATTGTGAGCGGTGACCAGAGGC
ACTGGGGTGAGTTTATCACTCCGGGGTTGTTGTTTTTGTACATAGCTGGA
TGGATCGGGTGGGTTGGCAGGAGCTACTTGATCGCCATTAGCGGTGAAAA
GAAGCCGGCCATGAAGGAGATCATCATTGATGTTCCTTTGGCTTCCAGGT
TGGTCTTCAGAGGTTTTAGCTGGCCTGTTGCTGCTTACAGAGAGTTCGTT
AATGGTG
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