FC878518

Overview
NameFC878518
Unique NameFC878518
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC878518 vs. ExPASy Swiss-Prot
Match: NPR1_ARATH (Regulatory protein NPR1 OS=Arabidopsis thaliana GN=NPR1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.497e-16
Identity = 66/252 (26.19%), Postives = 109/252 (43.25%), Query Frame = 3 
Query:   90 NRCILSAHSQFLH--WLCKLRNDGSVSEGKPKYLMTDLVPYGKVGYEAFNDILHYLYTGKVKPSPLVVSTXXXXXXXXXXXXXXXNYAIELMYASAAFQMKELVLLLQ---------AVVEDVIPILMAALHCHLNQLRSL--CIQRVVRSNLDNIYLEKELPEEVSSEIKSIRIKFHQEFEDNTAEVDPVHAKRVRRIHKALDSDDFXXXXXXXXXYEVTXXXXXXXXXXXXXCSPNVFVEVLNMGLADLH 806
            +RC+LSA S F         +   S +    K  + ++    +VG+++   +L Y+Y+ +V+P P  VS                ++ +E++Y +  F++ EL+ L Q          V+ED + IL  A  C    ++ L  C + +V+SN+D + LEK LPEE+  EI   R +   E         P   K V  +HKALDSDD                           C+     ++L + LAD++
Sbjct:   80 HRCVLSARSSFFKSALAAAKKEKDSNNTAAVKLELKEIAKDYEVGFDSVVTVLAYVYSSRVRPPPKGVSECADENCCHVACRPAVDFMLEVLYLAFIFKIPELITLYQRHLLDVVDKVVIEDTLVILKLANICGKACMKLLDRCKEIIVKSNVDMVSLEKSLPEELVKEIIDRRKELGLEV--------PKVKKHVSNVHKALDSDDIELVKLLLKEDHTNLDDACALHFAVAYCNVKTATDLLKLDLADVN 323
The following BLAST results are available for this feature:
BLAST of FC878518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NPR1_ARATH8.497e-1626.19Regulatory protein NPR1 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA18DG04RM1 IVIA1 Citrus clementina cDNA clone IC0AAA18DG04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878518 ID=FC878518; Name=FC878518; organism=Citrus clementina; type=EST; length=809bp
CCCCACTGGTCCCAAGCTGGATCCGCCACTGCTGAAGAGCCATTGCTTGA
TGCTGAGATTGTTGTTGATGGCAAATCAGTGGCAGAGTTAATCGCTGCAT
ATTGTCTGCACACAGTCAATTTCTTCATTGGCTTTGTAAGTTGAGAAATG
ATGGTTCTGTGAGTGAGGGGAAACCCAAGTATCTTATGACTGATTTGGTG
CCTTATGGGAAGGTTGGATATGAAGCTTTCAATGATATCTTGCATTATCT
TTACACTGGGAAGGTTAAGCCATCTCCTCTAGTAGTGTCCACGTGTGTTG
ACGATGCTTGTGCTCCTGATGCTTGCCCTCCTGCTGTCAATTATGCTATT
GAGTTGATGTATGCTTCTGCTGCTTTTCAGATGAAAGAACTCGTTTTGCT
TTTGCAGGCTGTTGTGGAAGATGTAATCCCAATCCTTATGGCTGCCTTGC
ATTGCCACCTGAACCAGCTTCGTTCTCTCTGCATCCAGAGAGTTGTAAGG
TCAAATCTTGACAATATATATCTCGAGAAAGAGCTTCCTGAGGAAGTTTC
AAGTGAAATCAAATCAATCCGCATCAAATTTCACCAGGAGTTTGAAGATA
ATACAGCAGAAGTAGACCCTGTGCATGCAAAAAGAGTCAGAAGAATCCAC
AAGGCACTAGACTCTGATGATTTTGAACTGCTGAATCTTCTTCTGAATGA
ATATGAAGTCACTTTAGATGATGCTTATGCTCTGCACTATGCCGCTGCCT
ATTGCAGCCCTAATGTTTTTGTGGAAGTGCTCAATATGGGCTTGGCTGAT
CTNCATCTT
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