FC878519

Overview
NameFC878519
Unique NameFC878519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length898
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878519 vs. ExPASy Swiss-Prot
Match: ERG1_PANGI (Squalene monooxygenase OS=Panax ginseng PE=2 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 1.011e-92
Identity = 164/204 (80.39%), Postives = 182/204 (89.22%), Query Frame = 3
Query:  285 DVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSP 896
            DVI          LA TLA DGRRVHVIERDL+E DRIVGELLQPGGYLKLIELGLEDCV +IDAQRVFGYAL+ DG  T++SYPLEKFHSDVAGR FHNGRFVQR+REKAASLPNVR+EQGTVTSL+E+KG++KGVQYKTK G+EL+A+APLTIVCDGCFSNLRRSLCNPKV+VPSCFVGL+LEN +LP  NHGHV+LADPSP
Sbjct:   76 DVIIVGAGVAGSALAYTLANDGRRVHVIERDLTEQDRIVGELLQPGGYLKLIELGLEDCVNEIDAQRVFGYALYMDGKNTRLSYPLEKFHSDVAGRSFHNGRFVQRMREKAASLPNVRMEQGTVTSLVEKKGSVKGVQYKTKDGQELSAFAPLTIVCDGCFSNLRRSLCNPKVEVPSCFVGLILENIDLPHINHGHVILADPSP 279          
BLAST of FC878519 vs. ExPASy Swiss-Prot
Match: ERG11_ARATH (Squalene monooxygenase 1,1 OS=Arabidopsis thaliana GN=SQP1,1 PE=2 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 8.639e-60
Identity = 119/205 (58.05%), Postives = 145/205 (70.73%), Query Frame = 3
Query:  285 DVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEK--FHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPS 893
            DVI          LA  LAKDGRRVHVIERDL EP+RI+GE +QPGG L L +LGLEDC+E IDAQ+  G  ++KDG     S+P++   F  D + R FHNGRFVQRLR+KA+SLPNVRLE+GTV SL+EEKG IKGV YK  AGEE TA APLT+VCDGC+SNLRRSL +   +V S  VG + +NC L       ++++ PS
Sbjct:   47 DVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERIMGEFMQPGGRLMLSKLGLEDCLEGIDAQKATGMTVYKDGKEAVASFPVDNNNFPFDPSARSFHNGRFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGFISKNCQLEEPEKLKLIMSKPS 251          
BLAST of FC878519 vs. ExPASy Swiss-Prot
Match: ERG12_BRANA (Squalene monooxygenase 1,2 OS=Brassica napus GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.514e-59
Identity = 115/204 (56.37%), Postives = 147/204 (72.06%), Query Frame = 3
Query:  285 DVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLE-KFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPS 893
            DVI          LA  LAKDGRRVHVIERD+ EP R++GE +QPGG L L +LGL+DC+E+IDAQ+  G  LFKDG  T   +P++  F  + +GR FHNGRFVQRLR+KA+SLPNVRLE+GTV SL+EEKG +KGV YK  +GEE T++APLT+VCDGC SNLRRSL +   +V +  +G +  NC L   +  H+++A PS
Sbjct:   50 DVIIVGAGVGGSALAYALAKDGRRVHVIERDMREPVRMMGEFMQPGGRLMLSKLGLQDCLEEIDAQKSTGIRLFKDGKETVACFPVDTNFPYEPSGRFFHNGRFVQRLRQKASSLPNVRLEEGTVRSLIEEKGVVKGVTYKNSSGEETTSFAPLTVVCDGCHSNLRRSLNDNNAEVTAYEIGYISRNCRLEQPDKLHLIMAKPS 253          
BLAST of FC878519 vs. ExPASy Swiss-Prot
Match: ERG11_BRANA (Squalene monooxygenase 1,1 OS=Brassica napus GN=SQP1,1 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 2.128e-58
Identity = 120/227 (52.86%), Postives = 152/227 (66.96%), Query Frame = 3
Query:  216 DNGADSLRKTPTTALNGECPFDADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEK-FHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPS 893
            +N    + K P  A       DADVI          LA  LAKDGRRVHVIERD+ EP R++GE +QPGG L L +LGLEDC+E ID Q   G A++KDG +  +S+P +  F  +  GR F+NGRFVQRLR+KA+SLP V+LE+GTV SL+EEKG IKGV YK  AGEE TA+APLT+VCDGC+SNLRRS+ +   +V S  VG V +NC L       ++++ PS
Sbjct:   26 NNRRKKVAKLPDAATEVRRDGDADVIIVGAGVGGSALAYALAKDGRRVHVIERDMREPVRMMGEFMQPGGRLLLSKLGLEDCLEGIDEQIATGLAVYKDGQKALVSFPEDNDFPYEPTGRAFYNGRFVQRLRQKASSLPTVQLEEGTVKSLIEEKGVIKGVTYKNSAGEETTAFAPLTVVCDGCYSNLRRSVNDNNAEVISYQVGYVSKNCQLEDPEKLKLIMSKPS 252          
BLAST of FC878519 vs. ExPASy Swiss-Prot
Match: ERG12_ARATH (Squalene monooxygenase 1,2 OS=Arabidopsis thaliana GN=SQP1,2 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.056e-57
Identity = 115/207 (55.56%), Postives = 144/207 (69.57%), Query Frame = 3
Query:  282 ADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEK--FHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNP-KVDVPSCFVGLVLENCNLPFENHGHVVLADPS 893
            ADVI          LA  LAKDGRRVHVIERD+ EP+R++GE +QPGG L L +LGL+DC+E IDAQ+  G A++KDG      +P++   F  + + R FHNGRFVQ+LR KA SL NVRLE+GTV SLLEEKG +KGV YK K GEE TA APLT+VCDGC+SNLRRSL +    ++ S  VG + +NC L      H++L+ PS
Sbjct:   46 ADVIIVGAGVGGSALAYALAKDGRRVHVIERDMREPERMMGEFMQPGGRLMLSKLGLQDCLEDIDAQKATGLAVYKDGKEADAPFPVDNNNFSYEPSARSFHNGRFVQQLRRKAFSLSNVRLEEGTVKSLLEEKGVVKGVTYKNKEGEETTALAPLTVVCDGCYSNLRRSLNDDNNAEIMSYIVGYISKNCRLEEPEKLHLILSKPS 252          
BLAST of FC878519 vs. ExPASy Swiss-Prot
Match: ERG13_ARATH (Squalene monooxygenase 2 OS=Arabidopsis thaliana GN=SQP2 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.427e-54
Identity = 111/203 (54.68%), Postives = 138/203 (67.98%), Query Frame = 3
Query:  285 DVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEK-FHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTKAGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADP 890
            DVI          LA  LAKDGRRVHVIERDL EP R +GEL+Q GG   L +LGLEDC+E IDAQ     A++KDG    + +P +K F  +  GR   NGR VQRLR+KAASL NV+LE+GTV SL+EE+G +KGV YK  AGEE+TA+APLT+VCDGC+SNLRRSL +   +V S  VG V +N  L   +  H++ + P
Sbjct:   45 DVIIVGAGVAGASLAYALAKDGRRVHVIERDLKEPQRFMGELMQAGGRFMLAQLGLEDCLEDIDAQEAKSLAIYKDGKHATLPFPDDKSFPHEPVGRLLRNGRLVQRLRQKAASLSNVQLEEGTVKSLIEEEGVVKGVTYKNSAGEEITAFAPLTVVCDGCYSNLRRSLVDNTEEVLSYMVGYVTKNSRLEDPHSLHLIFSKP 247          
BLAST of FC878519 vs. ExPASy Swiss-Prot
Match: ERG1_HUMAN (Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 6.645e-44
Identity = 99/209 (47.37%), Postives = 130/209 (62.20%), Query Frame = 3
Query:  279 DADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRT--QISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSP 896
            D +VI          L   L++DGR+V VIERDL EPDRIVGE LQPGGY  L +LGL D VE +DAQ V GY +    +++  QI YPL + +   +GR FH+GRF+  LR+ A + PN +  +G V  LLEE   + GVQYK K  G+    +APLT+V DG FS  R+SL + KV V S FVG +++N      NH  ++LA+PSP
Sbjct:  123 DPEVIIVGAGVLGSALVAVLSRDGRKVTVIERDLKEPDRIVGEFLQPGGYHVLKDLGLGDTVEGLDAQVVNGYMIHDQESKSEVQIPYPLSENNQVQSGRAFHHGRFIMSLRKAAMAEPNAKFIEGVVLQLLEEDDVVMGVQYKDKETGDIKELHAPLTVVADGLFSKFRKSLVSNKVSVSSHFVGFLMKNAPQFKANHAELILANPSP 331          
BLAST of FC878519 vs. ExPASy Swiss-Prot
Match: ERG1_MOUSE (Squalene monooxygenase OS=Mus musculus GN=Sqle PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.253e-42
Identity = 97/209 (46.41%), Postives = 129/209 (61.72%), Query Frame = 3
Query:  279 DADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYAL--FKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSP 896
            D +VI          LA  L++DGR+V VIERDL EPDRIVGELLQPGGY  L ELGL D VE ++A  + GY +  ++  +  QI YPL + +   +G  FH+GRF+  LR+ A + PNV+  +G V  LLEE   + GVQYK K  G+    +APLT+V DG FS  R+SL + KV V S FVG ++++      N   +VL +PSP
Sbjct:  121 DPEVIIVGSGVLGSALAAVLSRDGRKVTVIERDLKEPDRIVGELLQPGGYRVLQELGLGDTVEGLNAHHIHGYIVHDYESRSEVQIPYPLSETNQVQSGIAFHHGRFIMSLRKAAMAEPNVKFIEGVVLQLLEEDDAVIGVQYKDKETGDTKELHAPLTVVADGLFSKFRKSLISSKVSVSSHFVGFLMKDAPQFKPNFAELVLVNPSP 329          
BLAST of FC878519 vs. ExPASy Swiss-Prot
Match: ERG1_RAT (Squalene monooxygenase OS=Rattus norvegicus GN=Sqle PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.762e-42
Identity = 98/235 (41.70%), Postives = 138/235 (58.72%), Query Frame = 3
Query:  201 RSKSEDNGADSLRKTPTTALNGECPFDADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRT--QISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEKGTIKGVQYKTK-AGEELTAYAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSP 896
            R + E N +++      T+++     D +VI          LA  L++DGR V VIERDL EPDRI+GE LQPGGY  L ELGL D VE ++A  + GY +    +R+  QI YP+ + +   +G  FH+G+F+  LR+ A + PNV+  +G V  LLEE   + GVQYK K  G+    +APLT+V DG FS  R++L + KV V S FVG ++++      N   +VL DPSP
Sbjct:   96 RRRKEVNLSETTLTGAATSVSTSSVTDPEVIIIGSGVLGSALATVLSRDGRTVTVIERDLKEPDRILGECLQPGGYRVLRELGLGDTVESLNAHHIHGYVIHDCESRSEVQIPYPVSENNQVQSGVAFHHGKFIMSLRKAAMAEPNVKFIEGVVLRLLEEDDAVIGVQYKDKETGDTKELHAPLTVVADGLFSKFRKNLISNKVSVSSHFVGFIMKDAPQFKANFAELVLVDPSP 330          
BLAST of FC878519 vs. ExPASy Swiss-Prot
Match: ERG1_SCHPO (Probable squalene monooxygenase OS=Schizosaccharomyces pombe GN=SPBC713.12 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.194e-38
Identity = 89/209 (42.58%), Postives = 117/209 (55.98%), Query Frame = 3
Query:  279 DADVIXXXXXXXXXXLANTLAKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEQIDAQRVFGYALFKDGNRTQISYPLEKFHSDVAGRGFHNGRFVQRLREKAASLPNVRLEQGTVTSLLEEK--GTIKGVQYKTKAGEELTAY-APLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCNLPFENHGHVVLADPSP 896
            DAD+I          L   L + GR+V V+ERD+SEPDRIVGELLQPGG   L ++G+ D VE ID Q   GY +F   +   + YP +       G GFH GRFV  LR+   S PNV + + TV  LL ++    I GV   +K  E    Y APLTIVCDGCFS  R++  +  + V   F+GL+L N +      GHV+L+  +P
Sbjct:    5 DADIIIIGAGITGCALGAALGRQGRKVLVLERDMSEPDRIVGELLQPGGIEALEKIGIADAVEGIDGQWTSGYQIFYGDSNVSVPYPSKPNGGAYQGIGFHYGRFVMNLRKALTSTPNVTVTEATVNELLRDETGEVITGVVTSSKKSESPVEYKAPLTIVCDGCFSKFRKAFIDHPIQVTDHFLGLILTNPDYIAPGRGHVILSKVAP 213          
The following BLAST results are available for this feature:
BLAST of FC878519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
ERG1_PANGI1.011e-9280.39Squalene monooxygenase OS=Panax ginseng PE=2 SV=1[more]
ERG11_ARATH8.639e-6058.05Squalene monooxygenase 1,1 OS=Arabidopsis thaliana... [more]
ERG12_BRANA2.514e-5956.37Squalene monooxygenase 1,2 OS=Brassica napus GN=SQ... [more]
ERG11_BRANA2.128e-5852.86Squalene monooxygenase 1,1 OS=Brassica napus GN=SQ... [more]
ERG12_ARATH1.056e-5755.56Squalene monooxygenase 1,2 OS=Arabidopsis thaliana... [more]
ERG13_ARATH1.427e-5454.68Squalene monooxygenase 2 OS=Arabidopsis thaliana G... [more]
ERG1_HUMAN6.645e-4447.37Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=... [more]
ERG1_MOUSE1.253e-4246.41Squalene monooxygenase OS=Mus musculus GN=Sqle PE=... [more]
ERG1_RAT4.762e-4241.70Squalene monooxygenase OS=Rattus norvegicus GN=Sql... [more]
ERG1_SCHPO3.194e-3842.58Probable squalene monooxygenase OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA44BE12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA44BE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878519 ID=FC878519; Name=FC878519; organism=Citrus clementina; type=EST; length=898bp
AAAAAAACTAAAACAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACG
TCGTCTGGTTTCGGTTTCGGTTTCTGTCCGGACCGGTGGAAAAGAAAAGA
AATGGCGGATCAGTACACGTGGGGATTGATCTTGGGCGCTGTATTGGGGC
TGGTGGCCGTTTATAACCTGGGCCTTCTTGCTTTGTATAATCTTGTCATG
AGGAGCAAGAGCGAGGACAACGGTGCAGATTCCTTACGCAAGACTCCAAC
TACGGCTCTAAATGGCGAATGCCCCTTCGATGCTGACGTCATCGTCGTCG
GCGCCGGCGTCGCTGGCGCTGCTCTCGCTAACACTCTTGCCAAGGATGGT
CGTCGAGTGCATGTGATTGAAAGGGATTTGTCGGAGCCTGACCGAATTGT
TGGTGAATTGCTGCAACCCGGGGGCTACCTCAAATTAATTGAGTTAGGAC
TTGAAGATTGTGTGGAGCAAATTGATGCTCAGCGCGTTTTTGGTTATGCC
CTTTTCAAGGATGGAAATAGGACCCAAATATCTTATCCCTTGGAAAAGTT
TCACTCAGATGTTGCAGGTAGAGGATTTCACAATGGACGTTTCGTACAGA
GGCTGCGGGAGAAAGCTGCTTCCCTTCCAAATGTACGATTGGAGCAAGGA
ACAGTCACTTCCCTGCTAGAAGAAAAAGGGACAATTAAAGGCGTGCAATA
CAAGACTAAGGCTGGTGAAGAACTGACAGCGTATGCTCCTTTGACAATTG
TATGTGATGGCTGTTTTTCGAATTTGCGTCGCTCACTTTGCAATCCTAAG
GTAGATGTTCCTTCCTGTTTTGTTGGCTTGGTCCTTGAGAACTGTAATCT
TCCATTTGAAAATCATGGGCATGTTGTACTAGCAGACCCTTCCCCAAT
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